Rh2BG135900

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003681
Physical Location & Seq
Reverse (-)
11588090 .. 11588704
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG135900.1

Sequence Viewer

Length: 447 bp
ATGGAGGGGCAATATTGTGATGACCACAGCAATTTCAATTTCAAAGCCAATCACATAACTCTCCTCATCGACAACTCTAGGGATCACTACTCGGACGAAATTTCGCAGCGCAACATAGTCTATGATGCTGCTGAGGTCTATCTTGCCACCAAGATCAACCCGAAAACCCAAATCTTTCGAATCAGCAAAGCACCGAAACAAAAGGTCCCCATCATTGTTGTTACCACCACCCAAGAAATCGCCGACACTTTCGAAAACATTAAAGTAAAGTGGCGCATGATCTTCCCTGAAGAAAAAGACCGTCACAGTCACTACAGTAGGCTCAATAAGAGCCGCTTTGAGCTAACATTCCACAGGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCTATGTATTGGCTCGGGCCGAGGCTATCAAAGATGCAGAAAAGACTCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

148

Amino Acids

17.5

Weight (kDa)

9.1

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 13 - 93 8.5e-14 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AciI CCGC 1 cut(s) 334
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 386
AgsI TTSAA 2 cut(s) 37, 43
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 106, 128
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 2 cut(s) 111, 276
AspS9I GGNCC 2 cut(s) 205, 408
AsuII TTCGAA 2 cut(s) 178, 252
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 115, 118
BccI CCATC 1 cut(s) 218
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 3 cut(s) 107, 129, 334
BlsI GCNGC 3 cut(s) 108, 130, 335
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 205, 408
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 2 cut(s) 115, 415
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 2 cut(s) 178, 252
BsaJI CCNNGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 115, 118
BshFI GGCC 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 1 cut(s) 410
BsoBI CYCGRG 1 cut(s) 405
Bsp119I TTCGAA 2 cut(s) 178, 252
Bsp143I GATC 3 cut(s) 82, 153, 279
BspACI CCGC 1 cut(s) 334
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 2 cut(s) 178, 252
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 82, 153, 279
Bst4CI ACNGT 3 cut(s) 302, 308, 317
BstBI TTCGAA 2 cut(s) 178, 252
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 111, 276
BstKTI GATC 3 cut(s) 85, 156, 282
BstMBI GATC 3 cut(s) 82, 153, 279
BstSFI CTRYAG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 115, 118
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 387
CfoI GCGC 2 cut(s) 111, 276
Cfr13I GGNCC 2 cut(s) 205, 408
Csp6I GTAC 1 cut(s) 385
CviAII CATG 1 cut(s) 277
CviJI RGCY 7 cut(s) 47, 322, 333, 343, 404, 410, 416
CviKI_1 RGCY 7 cut(s) 47, 322, 333, 343, 404, 410, 416
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 84, 155, 281
DpnII GATC 3 cut(s) 82, 153, 279
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 205
FaeI CATG 1 cut(s) 280
FaiI YATR 6 cut(s) 56, 116, 123, 278, 377, 396
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 107, 129, 334
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 107, 129, 334
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 110, 275
GluI GCNGC 3 cut(s) 107, 129, 334
HaeIII GGCC 1 cut(s) 410
HhaI GCGC 2 cut(s) 111, 276
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 2 cut(s) 109, 274
HinP1I GCGC 2 cut(s) 109, 274
HinfI GANTC 2 cut(s) 180, 436
Hpy188I TCNGA 1 cut(s) 94
HpyCH4III ACNGT 3 cut(s) 302, 308, 317
HpyCH4V TGCA 1 cut(s) 428
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 2 cut(s) 109, 274
Kzo9I GATC 3 cut(s) 82, 153, 279
LpnPI CCDG 2 cut(s) 300, 340
Lsp1109I GCAGC 2 cut(s) 115, 118
LweI GCATC 2 cut(s) 115, 415
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 220, 302, 308
MalI GATC 3 cut(s) 84, 155, 281
MboI GATC 3 cut(s) 82, 153, 279
MboII GAAGA 2 cut(s) 274, 302
MluCI AATT 3 cut(s) 31, 37, 99
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 3 cut(s) 74, 127, 406
MseI TTAA 1 cut(s) 261
NdeII GATC 3 cut(s) 82, 153, 279
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 302, 308
NspV TTCGAA 2 cut(s) 178, 252
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 108, 130, 335
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 205
PsiI TTATAA 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 205, 408
PspPPI RGGWCCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 107, 129, 334
Sau3AI GATC 3 cut(s) 82, 153, 279
Sau96I GGNCC 2 cut(s) 205, 408
SchI GAGTC 1 cut(s) 430
SetI ASST 3 cut(s) 138, 207, 345
SfaNI GCATC 2 cut(s) 115, 415
SfcI CTRYAG 1 cut(s) 313
SfuI TTCGAA 2 cut(s) 178, 252
SinI GGWCC 1 cut(s) 205
Sse9I AATT 3 cut(s) 31, 37, 99
SsiI CCGC 1 cut(s) 334
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 3 cut(s) 302, 308, 317
TaqI TCGA 3 cut(s) 69, 178, 252
TasI AATT 3 cut(s) 31, 37, 99
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 2 cut(s) 302, 308
TseI GCWGC 2 cut(s) 106, 128
Tsp45I GTSAC 2 cut(s) 302, 308
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 99
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.