Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276881.1

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 810

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276881.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 809 bp

atgcccacagcaatgtcttcctttttctcggcctatgcccccttcgctggttacatgtttatgctccaatccttgaacaccaatttcataccttaccaggtcaaatcatacatacacaaatacttcaaatcaagcatcaactacctcctggaccctcaagctaatcacataactctcctcgtcgactgttctagccaacgcggctactcctccggaatctcaatggctcagcgcaaccaagtccatgaggccgctgaggtctatctcgccaccaagatcagtccgaaaacccaagtttttcgaatcaccaaaacatctaaacaaaagacccccaaacttgccgttaccaccacccaagaaatcaccgacactttccaaaacattaaagtaaagtggcgcatgatcttccgttccaatgatgaccatcactacagtagtgatcagagtgcccgcattgagttaacattccctaggaaacacaaagataaggtgttggactcgtacatcccctatgtgttggctcaggccgaggctattaaagatgcagaaaagactctcaagctttatagttatgacgttaaacgttccattcactacaaccctactcgtggtagtgatgacgagggctacggaccttcttcgggcaattggagttgcgtagatcttgagcacccagctactttcgagacaatagcaatggagccggagctgaagaggatgatcatagaggatttggacaagttcgtgaagaggagggagttctacaagagagttggcaaggcttggaagagaggctacttgttgtttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

270

Amino Acids

31.26

Weight (kDa)

9.36

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	3 cut(s)	201, 252, 451
AclI	AACGTT	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	47, 608, 641
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	76, 127
AjnI	CCWGG	2 cut(s)	96, 147
AluBI	AGCT	4 cut(s)	161, 562, 677, 709
AluI	AGCT	4 cut(s)	161, 562, 677, 709
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	3 cut(s)	30, 249, 525
AspA2I	CCTAGG	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	234, 399
AspS9I	GGNCC	2 cut(s)	151, 632
AsuHPI	GGTGA	2 cut(s)	298, 355
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	151, 632
AvrII	CCTAGG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	451
BarI	GAAGNNNNNNTAC	1 cut(s)	779
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	672
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	98, 149
BclI	TGATCA	2 cut(s)	439, 720
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	2 cut(s)	192, 471
BfmI	CTRYAG	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	202, 252
BlnI	CCTAGG	1 cut(s)	470
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	2 cut(s)	203, 253
Bme1390I	CCNGG	2 cut(s)	98, 149
Bme18I	GGWCC	2 cut(s)	151, 632
BmgT120I	GGNCC	2 cut(s)	151, 632
BmiI	GGNNCC	2 cut(s)	153, 702
BmrFI	CCNGG	2 cut(s)	98, 149
BmsI	GCATC	2 cut(s)	144, 532
BpiI	GAAGAC	1 cut(s)	9
Bpu10I	CCTNAGC	2 cut(s)	255, 522
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	3 cut(s)	141, 542, 686
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	470, 528
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 608, 641
Bse3DI	GCAATG	2 cut(s)	18, 702
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	98, 149
BseDI	CCNNGG	2 cut(s)	470, 528
BseGI	GGATG	2 cut(s)	504, 723
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	47, 608, 641
BseMI	GCAATG	2 cut(s)	18, 702
BseMII	CTCAG	3 cut(s)	242, 246, 536
BseRI	GAGGAG	3 cut(s)	167, 199, 766
BseSI	GKGCMC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	32, 251, 527
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	213, 704
BslI	CCNNNNNNNGG	3 cut(s)	47, 608, 641
BsmAI	GTCTC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	32, 251, 527
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	451, 672
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	276, 402, 439, 661, 720
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	201, 252, 451
BspANI	GGCC	3 cut(s)	32, 251, 527
BspCNI	CTCAG	3 cut(s)	241, 247, 535
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	153, 702
BspT104I	TTCGAA	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	18, 702
BssECI	CCNNGG	2 cut(s)	470, 528
BssMI	GATC	5 cut(s)	276, 402, 439, 661, 720
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	98, 149
Bst4CI	ACNGT	2 cut(s)	188, 434
Bst6I	CTCTTC	3 cut(s)	707, 743, 782
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	228, 255, 522
BstF5I	GGATG	2 cut(s)	504, 723
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	234, 399
BstKTI	GATC	5 cut(s)	279, 405, 442, 664, 723
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	5 cut(s)	276, 402, 439, 661, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 201
BstNI	CCWGG	2 cut(s)	98, 149
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	96, 147
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	3 cut(s)	32, 251, 527
BtsCI	GGATG	2 cut(s)	504, 723
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	2 cut(s)	234, 399
Cfr13I	GGNCC	2 cut(s)	151, 632
CsiI	ACCWGGT	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	55, 245, 400
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	3 cut(s)	228, 255, 522
DpnI	GATC	5 cut(s)	278, 404, 441, 663, 722
DpnII	GATC	5 cut(s)	276, 402, 439, 661, 720
Eam1104I	CTCTTC	3 cut(s)	707, 743, 782
EarI	CTCTTC	3 cut(s)	707, 743, 782
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	151, 632
Eco57I	CTGAAG	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	96, 147
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	3 cut(s)	58, 248, 403
FatI	CATG	3 cut(s)	54, 244, 399
FauI	CCCGC	1 cut(s)	458
FbaI	TGATCA	2 cut(s)	439, 720
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	202, 252
FokI	GGATG	2 cut(s)	491, 730
Fsp4HI	GCNGC	2 cut(s)	202, 252
FspBI	CTAG	2 cut(s)	192, 471
GlaI	GCGC	2 cut(s)	233, 398
GluI	GCNGC	2 cut(s)	202, 252
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	32, 251, 527
HapII	CCGG	2 cut(s)	213, 704
HhaI	GCGC	2 cut(s)	234, 399
Hin1II	CATG	3 cut(s)	58, 248, 403
Hin6I	GCGC	2 cut(s)	232, 397
HinP1I	GCGC	2 cut(s)	232, 397
HincII	GTYRAC	2 cut(s)	184, 462
HindII	GTYRAC	2 cut(s)	184, 462
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	4 cut(s)	216, 303, 497, 553
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	213, 704
HphI	GGTGA	2 cut(s)	298, 355
Hpy166II	GTNNAC	2 cut(s)	184, 462
Hpy188I	TCNGA	2 cut(s)	285, 444
Hpy188III	TCNNGA	4 cut(s)	213, 665, 685, 745
Hpy8I	GTNNAC	2 cut(s)	184, 462
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	52, 645
HpyCH4III	ACNGT	2 cut(s)	188, 434
HpyCH4IV	ACGT	2 cut(s)	576, 583
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 201
HpyF3I	CTNAG	3 cut(s)	228, 255, 522
HpySE526I	ACGT	2 cut(s)	576, 583
Hsp92II	CATG	3 cut(s)	58, 248, 403
HspAI	GCGC	2 cut(s)	232, 397
Kpn2I	TCCGGA	1 cut(s)	212
Ksp22I	TGATCA	2 cut(s)	439, 720
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	276, 402, 439, 661, 720
LmnI	GCTCC	3 cut(s)	69, 700, 706
LpnPI	CCDG	9 cut(s)	33, 83, 110, 134, 161, 226, 509, 687, 717
LweI	GCATC	2 cut(s)	144, 532
MabI	ACCWGGT	1 cut(s)	96
MaeI	CTAG	2 cut(s)	192, 471
MaeII	ACGT	2 cut(s)	576, 583
MaeIII	GTNAC	2 cut(s)	50, 343
MalI	GATC	5 cut(s)	278, 404, 441, 663, 722
MboI	GATC	5 cut(s)	276, 402, 439, 661, 720
MboII	GAAGA	6 cut(s)	9, 397, 630, 724, 760, 799
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	451, 672
MluCI	AATT	2 cut(s)	82, 646
MlyI	GAGTC	2 cut(s)	491, 547
MmeI	TCCRAC	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	4 cut(s)	384, 461, 537, 579
MslI	CAYNNNNRTG	2 cut(s)	11, 59
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	213, 704
MspR9I	CCNGG	2 cut(s)	98, 149
MunI	CAATTG	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	98, 149
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	44, 201
NdeII	GATC	5 cut(s)	276, 402, 439, 661, 720
NlaIII	CATG	3 cut(s)	58, 248, 403
NlaIV	GGNNCC	2 cut(s)	153, 702
NmeAIII	GCCGAG	2 cut(s)	8, 553
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	301
PciI	ACATGT	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	216, 303
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	203, 253
PleI	GAGTC	2 cut(s)	491, 547
PpsI	GAGTC	2 cut(s)	491, 547
PscI	ACATGT	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	583
Psp6I	CCWGG	2 cut(s)	96, 147
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	96, 147
PspN4I	GGNNCC	2 cut(s)	153, 702
PspPI	GGNCC	2 cut(s)	151, 632
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	2 cut(s)	11, 59
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	384, 461, 537, 579
SatI	GCNGC	2 cut(s)	202, 252
Sau3AI	GATC	5 cut(s)	276, 402, 439, 661, 720
Sau96I	GGNCC	2 cut(s)	151, 632
SchI	GAGTC	2 cut(s)	491, 547
ScrFI	CCNGG	2 cut(s)	98, 149
SduI	GDGCHC	2 cut(s)	451, 672
SexAI	ACCWGGT	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	144, 532
SfcI	CTRYAG	1 cut(s)	430
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	2 cut(s)	151, 632
SmiMI	CAYNNNNRTG	2 cut(s)	11, 59
SmlI	CTYRAG	3 cut(s)	156, 557, 665
SmoI	CTYRAG	3 cut(s)	156, 557, 665
Sse9I	AATT	2 cut(s)	82, 646
SsiI	CCGC	3 cut(s)	201, 252, 451
SspMI	CTAG	2 cut(s)	192, 471
StyD4I	CCNGG	2 cut(s)	96, 147
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	188, 434
TaiI	ACGT	2 cut(s)	579, 586
TaqI	TCGA	3 cut(s)	183, 301, 684
TasI	AATT	2 cut(s)	82, 646
TauI	GCSGC	2 cut(s)	204, 254
TfiI	GAWTC	2 cut(s)	216, 303
Tru1I	TTAA	4 cut(s)	384, 461, 537, 579
Tru9I	TTAA	4 cut(s)	384, 461, 537, 579
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	2 cut(s)	398, 645
VpaK11BI	GGWCC	2 cut(s)	151, 632
XceI	RCATGY	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	2 cut(s)	192, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.