Rmu_sc0008864.1_g000007

Domain associated at C-terminal with AAA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008864.1
Physical Location & Seq
Forward (+)
49074 .. 50815
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008864.1_g000007.1.cds

Sequence Viewer

Length: 1539 bp
atggaggagcagcaatattatgatgaccacagcaattccagtttcaaagatataatgcccacagctatatcctcctttttctcggcctatgccccctttgctggttacatgtttatgctccaatccatgagcaccaatttcctcccttacgagtttaactcatacgtatactcgtacttaaaatcaagcctcagctacctcttggaccctctagccaatcacataactctcctcatcgacaagtctagcgatgaagactacttggacgaaatctatgattctgctgaggtctatcttgccaccaagatcaacccgaaaacccaaatctttcgaattagaaaagcaccgaaacaaaaggtccccatccttgatgttaccaccaaccaagaaatcactgacactttcgaagacattaacgtgaagtggcggatgatcttccctacagaaaacgatggttactacagtagcgtctacaagagccgcatggagctaacattccacaggaaacacaaagacaaagttataaactcgtacatcccctatgtgttggctcgggccaaggctatcaaagatgcagaaaagactctgaagctttatagttacaatagtaaacgttcctcggtcttcaaaatttctcgtggacgctctcatggttctgatgacgatgatgactttgcaccttcttcgggcaaatggagttgcatcgatcttgagcacccggctacttttgagacaatggcaatggagccggagctgaagaggatgatcatagaggatttggacaagtttgtgaagaggagggaattctacaagagagttggtaaggcttggaagagaggttacttgttgtatggtcctcccggtactggaaagtctagcttggttgcggccatggctaatcatctccattttaatatttatgacttggaacttactagtatttccagcaatgataagttgaggaaggccttgatgtctactacaaatcgttctattgtggtgtttgaggatattgattgcagcaagggatccgtaaaccgggaatcagcagagaagaaatttatggtttccgaagccaagtttacactctcgggtctactgaatgtcgtcgatggtctgtggtcaagttgtggtgatgagaggattattgtgtttaccaccaaccacaaggagcggctagaccctgcattgttgaggcctggtcgaatggacatgcacattcacatgtcgtattgcaccccaaaagggttcaagaccttggcttcaaactacctcggcattcaggacaccagcgaacatcgcctgtgtggagaaattgaagcattggtagagagcactaacatcacccctgcagaggtttgtgaggagcttatgaggggtgggggtgatggtgatgaatccgatgctgctcttgaaggacttgtcaattgtctcaagcgtaagaggctcgagaccaacaagatagaggatgaagaggttgggaatgcaaagacgcagaaaacagattataatgcatcagaaatttccgaaaattggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

58.52

Weight (kDa)

5.76

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 524, 1509
AccBSI CCGCTC 1 cut(s) 1174
AccI GTMKAC 4 cut(s) 168, 471, 977, 1096
AciI CCGC 4 cut(s) 427, 481, 887, 1174
AclI AACGTT 1 cut(s) 613
AclWI GGATC 2 cut(s) 1023, 1036
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 4 cut(s) 630, 803, 1058, 1521
AcuI CTGAAG 2 cut(s) 608, 776
AfaI GTAC 3 cut(s) 176, 533, 865
AfiI CCNNNNNNNGG 7 cut(s) 101, 686, 866, 1038, 1245, 1354, 1533
AflIII ACRYGT 2 cut(s) 108, 1224
AgsI TTSAA 6 cut(s) 46, 628, 1252, 1266, 1319, 1415
AhlI ACTAGT 1 cut(s) 935
AjnI CCWGG 1 cut(s) 1198
AluBI AGCT 7 cut(s) 65, 195, 490, 592, 754, 879, 1369
AluI AGCT 7 cut(s) 65, 195, 490, 592, 754, 879, 1369
Alw21I GWGCWC 3 cut(s) 134, 717, 1337
Alw26I GTCTC 3 cut(s) 725, 1436, 1445
AlwI GGATC 2 cut(s) 1023, 1036
Ama87I CYCGRG 3 cut(s) 552, 1090, 1448
AoxI GGCC 5 cut(s) 84, 555, 888, 966, 1196
ApeKI GCWGC 3 cut(s) 10, 1020, 1406
ApoI RAATTY 4 cut(s) 630, 803, 1058, 1521
AspS9I GGNCC 4 cut(s) 205, 358, 555, 854
AsuC2I CCSGG 3 cut(s) 719, 861, 1040
AsuHPI GGTGA 4 cut(s) 1145, 1336, 1397, 1403
AsuII TTCGAA 2 cut(s) 331, 405
AvaI CYCGRG 3 cut(s) 552, 1090, 1448
AvaII GGWCC 3 cut(s) 205, 358, 854
BamHI GGATCC 1 cut(s) 1028
BarI GAAGNNNNNNTAC 2 cut(s) 824, 856
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 3 cut(s) 261, 414, 616
Bbv12I GWGCWC 3 cut(s) 134, 717, 1337
BbvCI CCTCAGC 2 cut(s) 191, 285
BbvI GCAGC 3 cut(s) 22, 1032, 1393
BccI CCATC 4 cut(s) 371, 446, 1106, 1382
BcgI CGANNNNNNTGC 2 cut(s) 666, 700
BciT130I CCWGG 1 cut(s) 1200
BclI TGATCA 1 cut(s) 765
BcnI CCSGG 3 cut(s) 719, 861, 1040
BcoDI GTCTC 3 cut(s) 725, 1436, 1445
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 5 cut(s) 212, 246, 876, 936, 1178
BfmI CTRYAG 3 cut(s) 441, 460, 1350
BisI GCNGC 6 cut(s) 11, 481, 888, 1021, 1175, 1407
BlsI GCNGC 6 cut(s) 12, 482, 889, 1022, 1176, 1408
Bme1390I CCNGG 4 cut(s) 719, 861, 1040, 1200
Bme18I GGWCC 3 cut(s) 205, 358, 854
BmeT110I CYCGRG 3 cut(s) 552, 1090, 1448
BmgT120I GGNCC 4 cut(s) 205, 358, 555, 854
BmiI GGNNCC 4 cut(s) 207, 360, 747, 1030
BmrFI CCNGG 4 cut(s) 719, 861, 1040, 1200
BmsI GCATC 4 cut(s) 562, 711, 1393, 1523
BpiI GAAGAC 3 cut(s) 261, 414, 616
BplI GAGNNNNNCTC 2 cut(s) 143, 175
Bpu10I CCTNAGC 2 cut(s) 191, 285
Bpu14I TTCGAA 2 cut(s) 331, 405
BpuEI CTTGAG 2 cut(s) 731, 1418
BpuMI CCSGG 3 cut(s) 719, 861, 1040
Bsa29I ATCGAT 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 1445
BsaJI CCNNGG 5 cut(s) 558, 618, 891, 1257, 1273
Bsc4I CCNNNNNNNGG 7 cut(s) 101, 686, 866, 1038, 1245, 1354, 1533
Bse1I ACTGG 2 cut(s) 39, 871
Bse3DI GCAATG 2 cut(s) 747, 955
BseBI CCWGG 1 cut(s) 1200
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 5 cut(s) 558, 618, 891, 1257, 1273
BseGI GGATG 5 cut(s) 363, 435, 534, 768, 1474
BseLI CCNNNNNNNGG 7 cut(s) 101, 686, 866, 1038, 1245, 1354, 1533
BseMI GCAATG 2 cut(s) 747, 955
BseMII CTCAG 2 cut(s) 205, 276
BseNI ACTGG 2 cut(s) 39, 871
BseRI GAGGAG 4 cut(s) 20, 221, 811, 1379
BseXI GCAGC 3 cut(s) 22, 1032, 1393
BshFI GGCC 5 cut(s) 86, 557, 890, 968, 1198
BshVI ATCGAT 1 cut(s) 705
BsiHKAI GWGCWC 3 cut(s) 134, 717, 1337
BsiHKCI CYCGRG 3 cut(s) 552, 1090, 1448
BsiSI CCGG 4 cut(s) 719, 749, 861, 1039
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 7 cut(s) 101, 686, 866, 1038, 1245, 1354, 1533
BsmAI GTCTC 3 cut(s) 725, 1436, 1445
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 1278, 1489
BsnI GGCC 5 cut(s) 86, 557, 890, 968, 1198
Bso31I GGTCTC 1 cut(s) 1445
BsoBI CYCGRG 3 cut(s) 552, 1090, 1448
Bsp119I TTCGAA 2 cut(s) 331, 405
Bsp1286I GDGCHC 3 cut(s) 134, 717, 1337
Bsp143I GATC 5 cut(s) 306, 432, 706, 765, 1028
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 4 cut(s) 427, 481, 887, 1174
BspANI GGCC 5 cut(s) 86, 557, 890, 968, 1198
BspCNI CTCAG 2 cut(s) 204, 277
BspDI ATCGAT 1 cut(s) 705
BspLI GGNNCC 4 cut(s) 207, 360, 747, 1030
BspMAI CTGCAG 1 cut(s) 1354
BspPI GGATC 2 cut(s) 1023, 1036
BspT104I TTCGAA 2 cut(s) 331, 405
BspTNI GGTCTC 1 cut(s) 1445
BsrBI CCGCTC 1 cut(s) 1174
BsrDI GCAATG 2 cut(s) 747, 955
BsrI ACTGG 2 cut(s) 39, 871
BssECI CCNNGG 5 cut(s) 558, 618, 891, 1257, 1273
BssMI GATC 5 cut(s) 306, 432, 706, 765, 1028
BssNAI GTATAC 1 cut(s) 169
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 3 cut(s) 558, 891, 1257
Bst1107I GTATAC 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 1200
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 4 cut(s) 752, 788, 827, 1467
BstBAI YACGTR 1 cut(s) 166
BstBI TTCGAA 2 cut(s) 331, 405
BstDEI CTNAG 2 cut(s) 191, 285
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 5 cut(s) 363, 435, 534, 768, 1474
BstKTI GATC 5 cut(s) 309, 435, 709, 768, 1031
BstMAI GTCTC 3 cut(s) 725, 1436, 1445
BstMBI GATC 5 cut(s) 306, 432, 706, 765, 1028
BstMWI GCNNNNNNNGC 4 cut(s) 98, 893, 1299, 1444
BstNI CCWGG 1 cut(s) 1200
BstNSI RCATGY 3 cut(s) 112, 1216, 1228
BstSCI CCNGG 4 cut(s) 717, 859, 1038, 1198
BstSFI CTRYAG 3 cut(s) 441, 460, 1350
BstSNI TACGTA 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 22, 1032, 1393
BstV2I GAAGAC 3 cut(s) 261, 414, 616
BstX2I RGATCY 1 cut(s) 1028
BstYI RGATCY 1 cut(s) 1028
BstZ17I GTATAC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 5 cut(s) 86, 557, 890, 968, 1198
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 1 cut(s) 891
BtgZI GCGATG 2 cut(s) 264, 1283
BtsCI GGATG 5 cut(s) 363, 435, 534, 768, 1474
BtsIMutI CAGTG 1 cut(s) 393
Cfr13I GGNCC 4 cut(s) 205, 358, 555, 854
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 3 cut(s) 457, 651, 1501
Csp6I GTAC 3 cut(s) 175, 532, 864
CviAII CATG 7 cut(s) 109, 127, 484, 650, 892, 1213, 1225
CviQI GTAC 3 cut(s) 175, 532, 864
DdeI CTNAG 2 cut(s) 191, 285
DpnI GATC 5 cut(s) 308, 434, 708, 767, 1030
DpnII GATC 5 cut(s) 306, 432, 706, 765, 1028
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 4 cut(s) 752, 788, 827, 1467
EarI CTCTTC 4 cut(s) 752, 788, 827, 1467
EciI GGCGGA 1 cut(s) 442
Eco105I TACGTA 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 558, 891, 1257
Eco147I AGGCCT 2 cut(s) 968, 1198
Eco31I GGTCTC 1 cut(s) 1445
Eco47I GGWCC 3 cut(s) 205, 358, 854
Eco57I CTGAAG 2 cut(s) 608, 776
Eco88I CYCGRG 3 cut(s) 552, 1090, 1448
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 1198
EcoT14I CCWWGG 3 cut(s) 558, 891, 1257
EcoT22I ATGCAT 1 cut(s) 1516
ErhI CCWWGG 3 cut(s) 558, 891, 1257
FaeI CATG 7 cut(s) 112, 130, 487, 653, 895, 1216, 1228
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 344
FatI CATG 7 cut(s) 108, 126, 483, 649, 891, 1212, 1224
FbaI TGATCA 1 cut(s) 765
FblI GTMKAC 4 cut(s) 168, 471, 977, 1096
Fnu4HI GCNGC 6 cut(s) 11, 481, 888, 1021, 1175, 1407
FokI GGATG 5 cut(s) 350, 442, 521, 775, 1481
Fsp4HI GCNGC 6 cut(s) 11, 481, 888, 1021, 1175, 1407
FspBI CTAG 5 cut(s) 212, 246, 876, 936, 1178
GluI GCNGC 6 cut(s) 11, 481, 888, 1021, 1175, 1407
HaeIII GGCC 5 cut(s) 86, 557, 890, 968, 1198
HapII CCGG 4 cut(s) 719, 749, 861, 1039
HgaI GACGC 3 cut(s) 457, 651, 1501
Hin1II CATG 7 cut(s) 112, 130, 487, 653, 895, 1216, 1228
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 4 cut(s) 278, 583, 1043, 1397
HpaII CCGG 4 cut(s) 719, 749, 861, 1039
HphI GGTGA 4 cut(s) 1145, 1336, 1397, 1403
Hpy166II GTNNAC 9 cut(s) 169, 472, 611, 641, 978, 1036, 1083, 1097, 1155
Hpy188I TCNGA 6 cut(s) 588, 658, 1072, 1402, 1519, 1528
Hpy188III TCNNGA 5 cut(s) 710, 1252, 1283, 1412, 1450
Hpy8I GTNNAC 9 cut(s) 169, 472, 611, 641, 978, 1036, 1083, 1097, 1155
Hpy99I CGWCG 1 cut(s) 1112
HpyAV CCTTC 3 cut(s) 690, 958, 1409
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 3 cut(s) 165, 417, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 893, 1299, 1444
HpyF3I CTNAG 2 cut(s) 191, 285
HpySE526I ACGT 3 cut(s) 165, 417, 613
Hsp92II CATG 7 cut(s) 112, 130, 487, 653, 895, 1216, 1228
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 5 cut(s) 306, 432, 706, 765, 1028
LmnI GCTCC 7 cut(s) 7, 123, 487, 745, 751, 1171, 1366
Lsp1109I GCAGC 3 cut(s) 22, 1032, 1393
LweI GCATC 4 cut(s) 562, 711, 1393, 1523
MaeI CTAG 5 cut(s) 212, 246, 876, 936, 1178
MaeII ACGT 3 cut(s) 165, 417, 613
MaeIII GTNAC 5 cut(s) 104, 373, 455, 599, 839
MalI GATC 5 cut(s) 308, 434, 708, 767, 1030
MbiI CCGCTC 1 cut(s) 1174
MboI GATC 5 cut(s) 306, 432, 706, 765, 1028
MfeI CAATTG 1 cut(s) 1426
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 3 cut(s) 134, 717, 1337
MlyI GAGTC 1 cut(s) 577
Mph1103I ATGCAT 1 cut(s) 1516
MseI TTAA 4 cut(s) 156, 179, 414, 912
MslI CAYNNNNRTG 3 cut(s) 113, 416, 1223
MspI CCGG 4 cut(s) 719, 749, 861, 1039
MspR9I CCNGG 4 cut(s) 719, 861, 1040, 1200
MunI CAATTG 1 cut(s) 1426
Mva1269I GAATGC 2 cut(s) 1278, 1489
MvaI CCWGG 1 cut(s) 1200
MwoI GCNNNNNNNGC 4 cut(s) 98, 893, 1299, 1444
NciI CCSGG 3 cut(s) 719, 861, 1040
NcoI CCATGG 1 cut(s) 891
NdeII GATC 5 cut(s) 306, 432, 706, 765, 1028
NlaIII CATG 7 cut(s) 112, 130, 487, 653, 895, 1216, 1228
NlaIV GGNNCC 4 cut(s) 207, 360, 747, 1030
NmeAIII GCCGAG 2 cut(s) 62, 1254
NsiI ATGCAT 1 cut(s) 1516
NspI RCATGY 3 cut(s) 112, 1216, 1228
NspV TTCGAA 2 cut(s) 331, 405
PaeR7I CTCGAG 1 cut(s) 1448
PceI AGGCCT 2 cut(s) 968, 1198
PciI ACATGT 2 cut(s) 108, 1224
PctI GAATGC 2 cut(s) 1278, 1489
PfeI GAWTC 3 cut(s) 278, 1043, 1397
PkrI GCNGC 6 cut(s) 12, 482, 889, 1022, 1176, 1408
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 2 cut(s) 108, 1224
PsiI TTATAA 2 cut(s) 524, 1509
Psp1406I AACGTT 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 1198
PspGI CCWGG 1 cut(s) 1198
PspN4I GGNNCC 4 cut(s) 207, 360, 747, 1030
PspPI GGNCC 4 cut(s) 205, 358, 555, 854
PspPPI RGGWCCY 1 cut(s) 358
PstI CTGCAG 1 cut(s) 1354
PsuI RGATCY 1 cut(s) 1028
RsaI GTAC 3 cut(s) 176, 533, 865
RsaNI GTAC 3 cut(s) 175, 532, 864
RseI CAYNNNNRTG 3 cut(s) 113, 416, 1223
SaqAI TTAA 4 cut(s) 156, 179, 414, 912
SatI GCNGC 6 cut(s) 11, 481, 888, 1021, 1175, 1407
Sau3AI GATC 5 cut(s) 306, 432, 706, 765, 1028
Sau96I GGNCC 4 cut(s) 205, 358, 555, 854
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 4 cut(s) 719, 861, 1040, 1200
SduI GDGCHC 3 cut(s) 134, 717, 1337
SfaNI GCATC 4 cut(s) 562, 711, 1393, 1523
SfcI CTRYAG 3 cut(s) 441, 460, 1350
Sfr274I CTCGAG 1 cut(s) 1448
SfuI TTCGAA 2 cut(s) 331, 405
SinI GGWCC 3 cut(s) 205, 358, 854
SlaI CTCGAG 1 cut(s) 1448
SmiMI CAYNNNNRTG 3 cut(s) 113, 416, 1223
SmlI CTYRAG 3 cut(s) 710, 1433, 1448
SmoI CTYRAG 3 cut(s) 710, 1433, 1448
SnaBI TACGTA 1 cut(s) 166
SpeI ACTAGT 1 cut(s) 935
SseBI AGGCCT 2 cut(s) 968, 1198
SsiI CCGC 4 cut(s) 427, 481, 887, 1174
SspI AATATT 2 cut(s) 17, 916
SspMI CTAG 5 cut(s) 212, 246, 876, 936, 1178
StuI AGGCCT 2 cut(s) 968, 1198
StyD4I CCNGG 4 cut(s) 717, 859, 1038, 1198
StyI CCWWGG 3 cut(s) 558, 891, 1257
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 3 cut(s) 168, 420, 616
TaqI TCGA 7 cut(s) 237, 331, 405, 705, 1110, 1204, 1449
TaqII GACCGA 1 cut(s) 610
TauI GCSGC 3 cut(s) 483, 890, 1177
TfiI GAWTC 3 cut(s) 278, 1043, 1397
Tru1I TTAA 4 cut(s) 156, 179, 414, 912
Tru9I TTAA 4 cut(s) 156, 179, 414, 912
TscAI CASTG 1 cut(s) 400
TseI GCWGC 3 cut(s) 10, 1020, 1406
TspDTI ATGAA 3 cut(s) 267, 1410, 1485
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 3 cut(s) 205, 358, 854
XapI RAATTY 4 cut(s) 630, 803, 1058, 1521
XceI RCATGY 3 cut(s) 112, 1216, 1228
XhoI CTCGAG 1 cut(s) 1448
XmiI GTMKAC 4 cut(s) 168, 471, 977, 1096
XspI CTAG 5 cut(s) 212, 246, 876, 936, 1178
Zsp2I ATGCAT 1 cut(s) 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.