Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Forward (+)

21385793 .. 21386611

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1253400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACACCTTCTTGCCTTACATGCTTGCTCGGGCAAATGCCATTAAAGAAGAGGAGAAGGTTGTGAAGCTTTATTCTCGTCATTTATGTTCGTATGATGATGGCAACAATAGTACTTGGGGATTGATATACCTAGAGCACCCTTCTACTTTTGAGACGATGGCGATGGACCATAAGCTCAAGAAAATGATTGCAGAGGATTTGGACAGGTTTGTGAGGAGCAGGGAGTTTTACAAGAAGGTGGGGAAGGCTTGGAAAAAGGCTACTTGTTGTATGAGGGTGTTGTTGTGTACTATAAATCGTTCGATTTTGGTGATTGAGGATATCGATTGCTGCAGTGTTGATATACAAAATCGGCAATCAGAGAAACAAAATCAAACATCTAACACCAAGTTGGTGTCACTCTCGGGCTTATTGAACTTTATAGATGGTTTGTTATCGAGCTTTGGCGACGAGAGAATTCTTGTATTCACCACCAACAAGAAGGATCGACTTGACCCTGCATTGCTGCGTCTTAGTCGAATGGATGTGCACATACACATGTTATATTGCACGATAAGCGAGTTCAGGCTTTTAGCCTCTAACTACCTTGCCTTGTCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

202

Amino Acids

23.3

Weight (kDa)

8.64

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	98 - 181	7e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	459
AfaI	GTAC	2 cut(s)	115, 292
AfiI	CCNNNNNNNGG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	599
AluBI	AGCT	3 cut(s)	70, 178, 444
AluI	AGCT	3 cut(s)	70, 178, 444
Alw21I	GWGCWC	2 cut(s)	141, 534
Alw26I	GTCTC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	2 cut(s)	30, 406
ApaLI	GTGCAC	1 cut(s)	530
ApeKI	GCWGC	2 cut(s)	333, 508
ApoI	RAATTY	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	325, 463
AvaI	CYCGRG	2 cut(s)	30, 406
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	141, 534
BbvI	GCAGC	2 cut(s)	320, 495
BccI	CCATC	4 cut(s)	95, 154, 160, 422
BciT130I	CCWGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	334, 509
BlsI	GCNGC	2 cut(s)	335, 510
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	30, 406
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	601
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	503
BseRI	GAGGAG	2 cut(s)	68, 232
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	320, 495
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	141, 534
BsiHKCI	CYCGRG	2 cut(s)	30, 406
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsoBI	CYCGRG	2 cut(s)	30, 406
Bsp1286I	GDGCHC	2 cut(s)	141, 534
Bsp143I	GATC	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	338
BspPI	GGATC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	503
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	601
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	515
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 558
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	2 cut(s)	25, 544
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	320, 495
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	114, 291
CviAII	CATG	2 cut(s)	22, 541
CviJI	RGCY	8 cut(s)	70, 178, 251, 263, 411, 444, 571, 578
CviKI_1	RGCY	8 cut(s)	70, 178, 251, 263, 411, 444, 571, 578
CviQI	GTAC	2 cut(s)	114, 291
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	2 cut(s)	30, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	2 cut(s)	25, 544
FatI	CATG	2 cut(s)	21, 540
Fnu4HI	GCNGC	2 cut(s)	334, 509
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	334, 509
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	334, 509
HgaI	GACGC	1 cut(s)	500
Hin1II	CATG	2 cut(s)	25, 544
HindIII	AAGCTT	1 cut(s)	68
HphI	GGTGA	2 cut(s)	325, 463
Hpy166II	GTNNAC	2 cut(s)	291, 532
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	291, 532
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	6 cut(s)	19, 52, 153, 232, 241, 478
HpyCH4V	TGCA	5 cut(s)	194, 336, 503, 532, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 558
HpyF3I	CTNAG	1 cut(s)	515
Hsp92II	CATG	2 cut(s)	25, 544
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	5 cut(s)	193, 208, 513, 553, 586
Lsp1109I	GCAGC	2 cut(s)	320, 495
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	141, 534
MluCI	AATT	1 cut(s)	459
MnlI	CCTC	6 cut(s)	46, 190, 210, 270, 313, 589
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	2 cut(s)	22, 558
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	25, 544
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	2 cut(s)	25, 544
PciI	ACATGT	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	335, 510
PscI	ACATGT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	115, 292
RsaNI	GTAC	2 cut(s)	114, 291
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	334, 509
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	141, 534
SfcI	CTRYAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	599
TaqI	TCGA	5 cut(s)	305, 327, 440, 490, 520
TasI	AATT	1 cut(s)	459
TatI	WGTACW	2 cut(s)	113, 290
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	2 cut(s)	333, 508
Tsp45I	GTSAC	1 cut(s)	399
TspRI	CASTG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	2 cut(s)	25, 544
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.