Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

7551579 .. 7554814

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1090900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGGACGCGTGTTCGCTCTCAGATTTCTCGACCTCTCTCTCTCTCTCGAAGATTCCAGTAAACCTTTCCGTTTCCTTCTGTGCAGGCTTCTCGAGTTCTCTCTCTAAAATCCAATCTCTCTCCAAAATTTCATACTTCTCCTTCAAACCGGTTTCTCTCTCTAGAACTCCCTCGCCGCTGCCTTCTGTCTTTCACTTTCTTGATGAAAACGACTCACTTCCTAGCTCCTCTGTCACTTCCATGTCCGCCGTCGGTGGGTATTATAAGCTCACGGAGCTCTCGGTTTTGTTCATTTCTTTTTGGGTACCCCAAGTGCTCCGTTTGGTTGCTGAGAGACTGAGAAAAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.95

Weight (kDa)

9.06

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	179, 249
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	9
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	3 cut(s)	228, 271, 280
AluI	AGCT	3 cut(s)	228, 271, 280
Alw21I	GWGCWC	2 cut(s)	282, 321
Alw26I	GTCTC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	282, 321
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	165, 225
BisI	GCNGC	2 cut(s)	179, 182
BlsI	GCNGC	2 cut(s)	180, 183
BmeT110I	CYCGRG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	36, 324, 332
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	307
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	282, 321
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	282, 321
BspACI	CCGC	2 cut(s)	179, 249
BspCNI	CTCAG	3 cut(s)	35, 325, 333
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	22, 333, 341
BstFNI	CGCG	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	151
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	308
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	4 cut(s)	90, 228, 271, 280
CviKI_1	RGCY	4 cut(s)	90, 228, 271, 280
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	3 cut(s)	22, 333, 341
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	1 cut(s)	247
FaiI	YATR	3 cut(s)	136, 245, 267
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	179, 182
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	179, 182
FspBI	CTAG	2 cut(s)	165, 225
GluI	GCNGC	2 cut(s)	179, 182
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	2 cut(s)	55, 215
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	7, 64
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	5 cut(s)	31, 49, 94, 165, 203
Hpy8I	GTNNAC	2 cut(s)	7, 64
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	88, 154, 195
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	3 cut(s)	22, 333, 341
Hsp92II	CATG	1 cut(s)	247
KpnI	GGTACC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	233, 277, 324
LpnPI	CCDG	3 cut(s)	72, 72, 165
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	165, 225
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	282, 321
MluCI	AATT	1 cut(s)	129
MluI	ACGCGT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	3 cut(s)	46, 184, 241
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	180, 183
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	309
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	282
SatI	GCNGC	2 cut(s)	179, 182
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	282, 321
SetI	ASST	5 cut(s)	38, 69, 230, 273, 282
Sfr274I	CTCGAG	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	2 cut(s)	179, 249
SspMI	CTAG	2 cut(s)	165, 225
SstI	GAGCTC	1 cut(s)	282
TaqI	TCGA	3 cut(s)	32, 50, 95
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	123, 222, 283
TspGWI	ACGGA	3 cut(s)	61, 290, 311
XapI	RAATTY	1 cut(s)	129
XbaI	TCTAGA	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	94
XspI	CTAG	2 cut(s)	165, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.