Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

37356933 .. 37363943

Gene Structure 7011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATTTCCTCCACTTTTTCCCTTCATTTGGGAAAGTGTTTCCCTTCCAATGGCTGTTCCAAAACACGGAAAGGAAACACTTTCCTTTCCCAAGGCCCATTTTCCGGGGAAACAAACAAGGCCTTATATCAATCCAGAGCAAATTGGATTTGCAAAGGAAGCACGACTCCGACACAGACATGGTGAGACAACACAATATGACGACGTCATTGACGAGGACGTCGACGACTCCGCATCTCCTTTCTCCACCTCCAATGGTGTCACCTCTCAACTTGAAGAAACCATCGCAGTTGTCAATCCCTTGTTCGACCACGACATCGCCACCAAGGATATCCACATCGATCTTTTTACTTCTCTATCTATTCGAATCTTCCTCCCCGAATCCGCTCTCAACCCGCCGGAGCCCTCCGGTAAATCTAGGGTTTGACGGCCCAATCGAATTCTCCGGTGAGTCCGAACTAGTCATTCCATCCTTCCGGCCGCAACAGCTGCGGCAATGCGGTGGTGGAGAATACGTTGAGAGCCGAGCCGAGAAGGATCAACTACGGCTTCGGCAATGTCATCGAGGGGTTGAATTTGATGGCCGAGTCGGCTCCGGGGTCTATAGAGGGTACTCGCCAGGTCCGACGAAGCAAGAGATTACAACCACGATTCGATTAAGTTCGAATCAAGAGAAGCCAACAAGTCCACCGGTGATGCGAAATCTAGAGTTTCGTCGCCGATCTCCTCCTCCCCAATGCTTTGTTTGGTTACTGCGAGACCAACAAAAAAAACGAGAAGGGGATTCTTGTGTTTTCATGGTGACCGATGAAATTTTTTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

31.46

Weight (kDa)

9.66

Isoelectric Point (pI)

68.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AatII	GACGTC	2 cut(s)	209, 224
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	6 cut(s)	233, 386, 397, 482, 493, 501
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	2 cut(s)	479, 583
AcsI	RAATTY	3 cut(s)	440, 575, 813
AcyI	GRCGYC	2 cut(s)	206, 221
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	4 cut(s)	29, 51, 67, 105
AgeI	ACCGGT	1 cut(s)	691
AgsI	TTSAA	2 cut(s)	277, 575
AhlI	ACTAGT	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	181, 753
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	5 cut(s)	95, 121, 430, 479, 583
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	3 cut(s)	440, 575, 813
AsiGI	ACCGGT	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	96, 431, 623
AsuC2I	CCSGG	2 cut(s)	107, 598
AsuHPI	GGTGA	5 cut(s)	196, 255, 461, 706, 814
AsuII	TTCGAA	2 cut(s)	366, 665
AvaII	GGWCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	3 cut(s)	292, 478, 575
BceAI	ACGGC	2 cut(s)	445, 563
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	2 cut(s)	107, 598
BcoDI	GTCTC	2 cut(s)	181, 753
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	3 cut(s)	419, 461, 707
BfmI	CTRYAG	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	591
BisI	GCNGC	3 cut(s)	482, 491, 494
BlsI	GCNGC	3 cut(s)	483, 492, 495
Bme1390I	CCNGG	3 cut(s)	107, 598, 621
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	96, 431, 623
BmiI	GGNNCC	2 cut(s)	404, 595
BmrFI	CCNGG	3 cut(s)	107, 598, 621
BmsI	GCATC	2 cut(s)	244, 687
Bpu14I	TTCGAA	2 cut(s)	366, 665
BpuMI	CCSGG	2 cut(s)	107, 598
Bsa29I	ATCGAT	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	206, 221
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	4 cut(s)	92, 106, 326, 597
BsaWI	WCCGGW	3 cut(s)	409, 446, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 51, 67, 105
Bse118I	RCCGGY	1 cut(s)	691
Bse3DI	GCAATG	2 cut(s)	503, 563
BseBI	CCWGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	4 cut(s)	92, 106, 326, 597
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	4 cut(s)	29, 51, 67, 105
BseMI	GCAATG	2 cut(s)	503, 563
BseRI	GAGGAG	2 cut(s)	717, 720
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	5 cut(s)	97, 123, 432, 481, 585
BshTI	ACCGGT	1 cut(s)	691
BshVI	ATCGAT	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	482
BsiSI	CCGG	7 cut(s)	106, 400, 410, 447, 478, 597, 692
BslI	CCNNNNNNNGG	4 cut(s)	29, 51, 67, 105
BsmAI	GTCTC	2 cut(s)	181, 753
BsnI	GGCC	5 cut(s)	97, 123, 432, 481, 585
Bso31I	GGTCTC	1 cut(s)	753
Bsp119I	TTCGAA	2 cut(s)	366, 665
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	342, 538, 722
BspACI	CCGC	6 cut(s)	233, 386, 397, 482, 493, 501
BspANI	GGCC	5 cut(s)	97, 123, 432, 481, 585
BspDI	ATCGAT	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	404, 595
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	2 cut(s)	366, 665
BspTNI	GGTCTC	1 cut(s)	753
BsrBI	CCGCTC	1 cut(s)	388
BsrDI	GCAATG	2 cut(s)	503, 563
BsrFI	RCCGGY	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	4 cut(s)	92, 106, 326, 597
BssMI	GATC	3 cut(s)	342, 538, 722
BssNI	GRCGYC	2 cut(s)	206, 221
BssT1I	CCWWGG	2 cut(s)	92, 326
Bst2UI	CCWGG	1 cut(s)	621
BstACI	GRCGYC	2 cut(s)	206, 221
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstBI	TTCGAA	2 cut(s)	366, 665
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	3 cut(s)	345, 541, 725
BstMAI	GTCTC	2 cut(s)	181, 753
BstMBI	GATC	3 cut(s)	342, 538, 722
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 487, 490, 591
BstNI	CCWGG	1 cut(s)	621
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	3 cut(s)	105, 596, 619
BstSFI	CTRYAG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	477
BstZI	CGGCCG	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	341
BsuRI	GGCC	5 cut(s)	97, 123, 432, 481, 585
BsuTUI	ATCGAT	1 cut(s)	341
BtgZI	GCGATG	2 cut(s)	270, 303
BtsCI	GGATG	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	96, 431, 623
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	613
CspAI	ACCGGT	1 cut(s)	691
CviAII	CATG	2 cut(s)	181, 799
CviQI	GTAC	1 cut(s)	613
DpnI	GATC	3 cut(s)	344, 540, 724
DpnII	GATC	3 cut(s)	342, 538, 722
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	479, 583
EagI	CGGCCG	1 cut(s)	479
EclXI	CGGCCG	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	92, 326
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	753
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	623
Eco52I	CGGCCG	1 cut(s)	479
Eco91I	GGTNACC	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	802
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	92, 326
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	2 cut(s)	92, 326
FaeI	CATG	2 cut(s)	184, 802
FaiI	YATR	5 cut(s)	128, 182, 200, 606, 800
FatI	CATG	2 cut(s)	180, 798
FauI	CCCGC	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	482, 491, 494
FokI	GGATG	1 cut(s)	457
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	3 cut(s)	482, 491, 494
FspBI	CTAG	3 cut(s)	419, 461, 707
GluI	GCNGC	3 cut(s)	482, 491, 494
HaeIII	GGCC	5 cut(s)	97, 123, 432, 481, 585
HapII	CCGG	7 cut(s)	106, 400, 410, 447, 478, 597, 692
Hin1I	GRCGYC	2 cut(s)	206, 221
Hin1II	CATG	2 cut(s)	184, 802
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	9 cut(s)	167, 229, 368, 382, 452, 588, 652, 667, 785
HpaII	CCGG	7 cut(s)	106, 400, 410, 447, 478, 597, 692
HphI	GGTGA	5 cut(s)	196, 255, 461, 706, 814
Hpy166II	GTNNAC	2 cut(s)	225, 689
Hpy188I	TCNGA	3 cut(s)	172, 457, 627
Hpy188III	TCNNGA	3 cut(s)	136, 671, 707
Hpy8I	GTNNAC	2 cut(s)	225, 689
Hpy99I	CGWCG	5 cut(s)	208, 226, 229, 631, 720
HpyAV	CCTTC	5 cut(s)	33, 55, 484, 529, 773
HpyCH4IV	ACGT	3 cut(s)	206, 221, 516
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 487, 490, 591
HpySE526I	ACGT	3 cut(s)	206, 221, 516
Hsp92I	GRCGYC	2 cut(s)	206, 221
Hsp92II	CATG	2 cut(s)	184, 802
Kzo9I	GATC	3 cut(s)	342, 538, 722
LmnI	GCTCC	2 cut(s)	402, 599
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	244, 687
MaeI	CTAG	3 cut(s)	419, 461, 707
MaeII	ACGT	3 cut(s)	206, 221, 516
MaeIII	GTNAC	3 cut(s)	261, 750, 802
MalI	GATC	3 cut(s)	344, 540, 724
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	3 cut(s)	342, 538, 722
MboII	GAAGA	2 cut(s)	289, 363
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	4 cut(s)	143, 440, 575, 813
MlyI	GAGTC	4 cut(s)	161, 223, 461, 597
MmeI	TCCRAC	2 cut(s)	195, 650
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	7 cut(s)	106, 400, 410, 447, 478, 597, 692
MspR9I	CCNGG	3 cut(s)	107, 598, 621
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	4 cut(s)	160, 487, 490, 591
NciI	CCSGG	2 cut(s)	107, 598
NdeII	GATC	3 cut(s)	342, 538, 722
NlaIII	CATG	2 cut(s)	184, 802
NlaIV	GGNNCC	2 cut(s)	404, 595
NmeAIII	GCCGAG	3 cut(s)	551, 556, 611
NmuCI	GTSAC	2 cut(s)	261, 802
NspV	TTCGAA	2 cut(s)	366, 665
PceI	AGGCCT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	4 cut(s)	212, 221, 435, 623
PfeI	GAWTC	5 cut(s)	368, 382, 652, 667, 785
PflFI	GACNNNGTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	483, 492, 495
PleI	GAGTC	4 cut(s)	161, 223, 460, 596
PpsI	GAGTC	4 cut(s)	161, 223, 460, 596
Psp6I	CCWGG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	404, 595
PspPI	GGNCC	3 cut(s)	96, 431, 623
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	3 cut(s)	482, 491, 494
Sau3AI	GATC	3 cut(s)	342, 538, 722
Sau96I	GGNCC	3 cut(s)	96, 431, 623
SchI	GAGTC	4 cut(s)	161, 223, 461, 597
ScrFI	CCNGG	3 cut(s)	107, 598, 621
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	7 cut(s)	209, 224, 253, 268, 492, 519, 625
SfaNI	GCATC	2 cut(s)	244, 687
SfcI	CTRYAG	1 cut(s)	604
SfuI	TTCGAA	2 cut(s)	366, 665
SgrAI	CRCCGGYG	1 cut(s)	691
SgrDI	CGTCGACG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	460
Sse9I	AATT	4 cut(s)	143, 440, 575, 813
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	6 cut(s)	233, 386, 397, 482, 493, 501
SspMI	CTAG	3 cut(s)	419, 461, 707
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	105, 596, 619
StyI	CCWWGG	2 cut(s)	92, 326
TaiI	ACGT	3 cut(s)	209, 224, 519
TaqI	TCGA	8 cut(s)	224, 308, 341, 366, 438, 565, 655, 665
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	4 cut(s)	143, 440, 575, 813
TauI	GCSGC	2 cut(s)	484, 496
TfiI	GAWTC	5 cut(s)	368, 382, 652, 667, 785
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TseFI	GTSAC	2 cut(s)	261, 802
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	261, 802
TspDTI	ATGAA	3 cut(s)	15, 787, 825
TspGWI	ACGGA	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	3 cut(s)	440, 575, 813
XbaI	TCTAGA	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	3 cut(s)	419, 461, 707
ZraI	GACGTC	2 cut(s)	207, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.