Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

43890436 .. 43918365

Gene Structure 27930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTTTGCTGGACACCATTTGATGGCAGCAGCTGGAGGCTTGGAAGCAAATTAATGTGGTTTGAAACTGCTAGTTTACTTGGATGTGAATACTTTGTGGTCAATTTGAGATCTAAATACTTTGTGGTCTCAGCTGAAGGTCGTGGAAGCTGCAAGAGTGGAAAAATGGATAATGTTTACACACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCTATCAATACCCTGGAACCTGTACTTCGGGCAACGAACAGAAACAATGAGAACTATTGTTCTCCAAATGAGTTGACGGAGGACTTAGAGATGGGGAAGCAGGAGAGGAAGGCAGAGGTGGACTTGAAGGAAGGGGAGGGGTCGGAGAAGTTGGCGGCGGCGAGGCGGGCATCGACGACACAGTTAGAGTTTTCCGCGTTGGATGGGAAGATTGATTTGCCAATCTCCCGCTCTACAGTGAGAGGCTGGGTTGTTGTTGGTGGAGCATTGGAGGGGATTTGGGGTTCTGCCGTAAAGATTGGGATGGTGATTAGAGTTGGTTCAGGAGAGTATGATGGTGCAAGTAAGGCCACCACCAACTCGGGGGTGGTGGTGGCCCTTGATGGTCCAACGACGGCTATTCGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

207

Amino Acids

22.43

Weight (kDa)

6.62

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	444
AccII	CGCG	1 cut(s)	410
AciI	CCGC	5 cut(s)	368, 371, 379, 408, 442
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	23, 576
AgsI	TTSAA	2 cut(s)	65, 340
AjnI	CCWGG	3 cut(s)	184, 208, 225
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	3 cut(s)	33, 134, 150
AluI	AGCT	3 cut(s)	33, 134, 150
Alw26I	GTCTC	1 cut(s)	133
AlwNI	CAGNNNCTG	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	3 cut(s)	212, 561, 588
ApeKI	GCWGC	3 cut(s)	27, 30, 150
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	212, 589, 599
AsuHPI	GGTGA	1 cut(s)	532
AsuII	TTCGAA	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	599
BbvI	GCAGC	3 cut(s)	39, 42, 137
BccI	CCATC	7 cut(s)	17, 204, 298, 410, 511, 542, 590
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	3 cut(s)	186, 210, 227
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	447
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	5 cut(s)	28, 31, 151, 369, 372
BlsI	GCNGC	5 cut(s)	29, 32, 152, 370, 373
Bme1390I	CCNGG	3 cut(s)	186, 210, 227
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	212, 589, 599
BmiI	GGNNCC	2 cut(s)	194, 231
BmrFI	CCNGG	3 cut(s)	186, 210, 227
BmsI	GCATC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	616
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	209, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 576
BseBI	CCWGG	3 cut(s)	186, 210, 227
BseDI	CCNNGG	2 cut(s)	209, 225
BseGI	GGATG	3 cut(s)	89, 421, 522
BseLI	CCNNNNNNNGG	2 cut(s)	23, 576
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	39, 42, 137
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	214, 563, 590
BsiHKCI	CYCGRG	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	23, 576
BsmAI	GTCTC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	214, 563, 590
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	574
Bsp119I	TTCGAA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	5 cut(s)	368, 371, 379, 408, 442
BspANI	GGCC	3 cut(s)	214, 563, 590
BspCNI	CTCAG	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	194, 231
BspT104I	TTCGAA	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	209, 225
BssMI	GATC	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	186, 210, 227
Bst4CI	ACNGT	2 cut(s)	396, 451
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	130, 298
BstF5I	GGATG	3 cut(s)	89, 421, 522
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 560
BstNI	CCWGG	3 cut(s)	186, 210, 227
BstSCI	CCNGG	3 cut(s)	184, 208, 225
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	39, 42, 137
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	214, 563, 590
BtsCI	GGATG	3 cut(s)	89, 421, 522
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	212, 589, 599
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	9 cut(s)	33, 40, 134, 150, 214, 459, 563, 590, 611
CviKI_1	RGCY	9 cut(s)	33, 40, 134, 150, 214, 459, 563, 590, 611
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	130, 298
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	3 cut(s)	184, 208, 225
FaiI	YATR	1 cut(s)	546
FauI	CCCGC	2 cut(s)	372, 449
Fnu4HI	GCNGC	5 cut(s)	28, 31, 151, 369, 372
FokI	GGATG	3 cut(s)	96, 428, 529
Fsp4HI	GCNGC	5 cut(s)	28, 31, 151, 369, 372
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	5 cut(s)	28, 31, 151, 369, 372
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	214, 563, 590
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	4 cut(s)	77, 178, 288, 334
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	537
Hpy8I	GTNNAC	4 cut(s)	77, 178, 288, 334
Hpy99I	CGWCG	2 cut(s)	391, 610
HpyAV	CCTTC	5 cut(s)	131, 183, 316, 334, 338
HpyCH4III	ACNGT	2 cut(s)	396, 451
HpyCH4V	TGCA	2 cut(s)	153, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 560
HpyF3I	CTNAG	2 cut(s)	130, 298
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	3 cut(s)	39, 42, 137
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	112
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	433
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	2 cut(s)	50, 103
MmeI	TCCRAC	2 cut(s)	336, 393
MnlI	CCTC	8 cut(s)	30, 286, 312, 322, 343, 369, 449, 478
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	2 cut(s)	33, 134
MspR9I	CCNGG	3 cut(s)	186, 210, 227
MvaI	CCWGG	3 cut(s)	186, 210, 227
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	380, 560
NdeII	GATC	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	194, 231
NspV	TTCGAA	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	29, 32, 152, 370, 373
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	184, 208, 225
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	3 cut(s)	184, 208, 225
PspN4I	GGNNCC	2 cut(s)	194, 231
PspPI	GGNCC	3 cut(s)	212, 589, 599
PstNI	CAGNNNCTG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	110
PvuII	CAGCTG	2 cut(s)	33, 134
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	28, 31, 151, 369, 372
Sau3AI	GATC	1 cut(s)	110
Sau96I	GGNCC	3 cut(s)	212, 589, 599
ScrFI	CCNGG	3 cut(s)	186, 210, 227
SetI	ASST	6 cut(s)	35, 136, 142, 152, 235, 333
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	616
SinI	GGWCC	1 cut(s)	599
Sse9I	AATT	2 cut(s)	50, 103
SsiI	CCGC	5 cut(s)	368, 371, 379, 408, 442
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	184, 208, 225
TaaI	ACNGT	2 cut(s)	396, 451
TaqI	TCGA	2 cut(s)	386, 616
TasI	AATT	2 cut(s)	50, 103
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	2 cut(s)	371, 374
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	3 cut(s)	27, 30, 150
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.