RLG00000027431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003700
Physical Location & Seq
Forward (+)
11600724 .. 11601874
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027431

Sequence Viewer

Length: 393 bp
ATGGCTGATGATGTCAGAGCTAGAGGCCATGTGAGGAGGGATGAGAATGTTGGCCCAATAGTCGGCCCATCTCAGGTCGTTGTAGTCATAAGCCGCCGCCACTATCTTCTTCAGCTTCTGTGGGTCGTCTCTCTCCTCCCCCATTATTCAAGATCAGCGATGCTTCCTACTCCTCTGGGGGAAGAAGTAGGAGTTCTCGGTGACGAGCTTCTCGAGGTCGAAGATGGAGGCGGAGATTTGGTCGAGCAAGGGTTTGAGGTGAGTGGGATCGGTGAGTCGGCACTGGGCGAGTTGGCAATTGACAGAGGACTTGGAGATGGAGAAGCAGGAGAGGAAGGCGGAGCTGCGTTTCAATGCTGCAGTTTGATTGAGTGCTTGACCATGCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.81

Weight (kDa)

4.39

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 94, 97, 231, 339
AclWI GGATC 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 62, 73
AgsI TTSAA 2 cut(s) 150, 353
AluBI AGCT 4 cut(s) 20, 115, 208, 344
AluI AGCT 4 cut(s) 20, 115, 208, 344
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 275
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 3 cut(s) 25, 52, 64
ApeKI GCWGC 2 cut(s) 344, 357
AspS9I GGNCC 2 cut(s) 53, 65
AsuHPI GGTGA 3 cut(s) 212, 271, 284
AvaI CYCGRG 1 cut(s) 212
BbvI GCAGC 2 cut(s) 331, 344
BccI CCATC 3 cut(s) 76, 218, 311
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 358
BisI GCNGC 4 cut(s) 94, 97, 345, 358
BlsI GCNGC 4 cut(s) 95, 98, 346, 359
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 53, 65
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 73
Bse1I ACTGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 62, 73
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 3 cut(s) 49, 125, 162
BseXI GCAGC 2 cut(s) 331, 344
BshFI GGCC 3 cut(s) 27, 54, 66
BsiHKCI CYCGRG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 62, 73
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 3 cut(s) 27, 54, 66
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 152, 267
BspACI CCGC 4 cut(s) 94, 97, 231, 339
BspANI GGCC 3 cut(s) 27, 54, 66
BspCNI CTCAG 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 288
BssMI GATC 2 cut(s) 152, 267
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 155, 270
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 152, 267
BstSFI CTRYAG 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 331, 344
BsuRI GGCC 3 cut(s) 27, 54, 66
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 281, 388
CaiI CAGNNNCTG 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 53, 65
CviAII CATG 2 cut(s) 29, 382
CviJI RGCY 9 cut(s) 5, 20, 27, 54, 66, 93, 115, 208, 344
CviKI_1 RGCY 9 cut(s) 5, 20, 27, 54, 66, 93, 115, 208, 344
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 154, 269
DpnII GATC 2 cut(s) 152, 267
EciI GGCGGA 2 cut(s) 246, 354
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 32, 385
FaiI YATR 3 cut(s) 30, 89, 383
FatI CATG 2 cut(s) 28, 381
Fnu4HI GCNGC 4 cut(s) 94, 97, 345, 358
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 94, 97, 345, 358
FspBI CTAG 1 cut(s) 21
GluI GCNGC 4 cut(s) 94, 97, 345, 358
HaeIII GGCC 3 cut(s) 27, 54, 66
Hin1II CATG 2 cut(s) 32, 385
HinfI GANTC 1 cut(s) 275
HphI GGTGA 3 cut(s) 212, 271, 284
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 150, 212
HpyAV CCTTC 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 32, 385
Kzo9I GATC 2 cut(s) 152, 267
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 4 cut(s) 59, 161, 269, 312
Lsp1109I GCAGC 2 cut(s) 331, 344
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 154, 269
MboI GATC 2 cut(s) 152, 267
MboII GAAGA 4 cut(s) 98, 101, 194, 233
MfeI CAATTG 1 cut(s) 297
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 284
MunI CAATTG 1 cut(s) 297
NdeII GATC 2 cut(s) 152, 267
NlaIII CATG 2 cut(s) 32, 385
NmuCI GTSAC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 4 cut(s) 95, 98, 346, 359
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspPI GGNCC 2 cut(s) 53, 65
PstI CTGCAG 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 118
SatI GCNGC 4 cut(s) 94, 97, 345, 358
Sau3AI GATC 2 cut(s) 152, 267
Sau96I GGNCC 2 cut(s) 53, 65
SchI GAGTC 1 cut(s) 284
SetI ASST 7 cut(s) 22, 78, 117, 210, 219, 261, 346
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 358
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 297
SsiI CCGC 4 cut(s) 94, 97, 231, 339
SspMI CTAG 1 cut(s) 21
TaqI TCGA 3 cut(s) 213, 219, 243
TasI AATT 1 cut(s) 297
TauI GCSGC 2 cut(s) 96, 99
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 344, 357
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 1 cut(s) 288
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.