No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD17G1090900.v1.1 |
| pyrus_communis | pycom01g15950 |
| rosa_chinensis | RchiOBHm_Chr2g0120141 |
| rosa_laevigata | RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296 |
| rosa_multiflora | Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046 |
| rosa_roxburghii | Rroxscaffold_3G00244520 Rroxscaffold_7G00217730 |
| rosa_rugosa | Rorug02G0433800 Rorug03G0358900.1 |
| rosa_samantha | Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700 |
| rosa_wichuraiana | Rw2G022720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 159 |
| AciI | CCGC | 2 cut(s) | 104, 146 |
| AclWI | GGATC | 1 cut(s) | 28 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AlwI | GGATC | 1 cut(s) | 28 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 16, 48 |
| AseI | ATTAAT | 1 cut(s) | 258 |
| AspLEI | GCGC | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BccI | CCATC | 1 cut(s) | 76 |
| BmiI | GGNNCC | 1 cut(s) | 168 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 98, 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 218 |
| Bse8I | GATNNNNATC | 1 cut(s) | 218 |
| BseJI | GATNNNNATC | 1 cut(s) | 218 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| Bsh1236I | CGCG | 1 cut(s) | 159 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| BspACI | CCGC | 2 cut(s) | 104, 146 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspFNI | CGCG | 1 cut(s) | 159 |
| BspLI | GGNNCC | 1 cut(s) | 168 |
| BspPI | GGATC | 1 cut(s) | 28 |
| BspQI | GCTCTTC | 1 cut(s) | 270 |
| BssMI | GATC | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 1 cut(s) | 270 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstFNI | CGCG | 1 cut(s) | 159 |
| BstHHI | GCGC | 1 cut(s) | 159 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstUI | CGCG | 1 cut(s) | 159 |
| CfoI | GCGC | 1 cut(s) | 159 |
| CviAII | CATG | 2 cut(s) | 244, 269 |
| CviJI | RGCY | 1 cut(s) | 169 |
| CviKI_1 | RGCY | 1 cut(s) | 169 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 1 cut(s) | 270 |
| EarI | CTCTTC | 1 cut(s) | 270 |
| EciI | GGCGGA | 1 cut(s) | 119 |
| FaeI | CATG | 2 cut(s) | 247, 272 |
| FaiI | YATR | 7 cut(s) | 15, 229, 245, 270, 303, 313, 337 |
| FatI | CATG | 2 cut(s) | 243, 268 |
| GlaI | GCGC | 1 cut(s) | 158 |
| HhaI | GCGC | 1 cut(s) | 159 |
| Hin1II | CATG | 2 cut(s) | 247, 272 |
| Hin6I | GCGC | 1 cut(s) | 157 |
| HinP1I | GCGC | 1 cut(s) | 157 |
| HincII | GTYRAC | 1 cut(s) | 66 |
| HindII | GTYRAC | 1 cut(s) | 66 |
| HinfI | GANTC | 1 cut(s) | 113 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 112, 249 |
| Hpy188I | TCNGA | 3 cut(s) | 136, 190, 198 |
| Hpy188III | TCNNGA | 1 cut(s) | 179 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 112, 249 |
| HpyAV | CCTTC | 3 cut(s) | 94, 112, 116 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| Hsp92II | CATG | 2 cut(s) | 247, 272 |
| HspAI | GCGC | 1 cut(s) | 157 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LguI | GCTCTTC | 1 cut(s) | 270 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 4 cut(s) | 29, 77, 183, 192 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 2 cut(s) | 191, 255 |
| MlyI | GAGTC | 1 cut(s) | 107 |
| MmeI | TCCRAC | 1 cut(s) | 114 |
| MseI | TTAA | 1 cut(s) | 258 |
| MslI | CAYNNNNRTG | 1 cut(s) | 12 |
| MvnI | CGCG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIII | CATG | 2 cut(s) | 247, 272 |
| NlaIV | GGNNCC | 1 cut(s) | 168 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| PciSI | GCTCTTC | 1 cut(s) | 270 |
| PleI | GAGTC | 1 cut(s) | 107 |
| PpsI | GAGTC | 1 cut(s) | 107 |
| PshBI | ATTAAT | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 1 cut(s) | 168 |
| RseI | CAYNNNNRTG | 1 cut(s) | 12 |
| SapI | GCTCTTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 1 cut(s) | 258 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| SchI | GAGTC | 1 cut(s) | 107 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 1 cut(s) | 111 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 12 |
| Sse9I | AATT | 2 cut(s) | 191, 255 |
| SsiI | CCGC | 2 cut(s) | 104, 146 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TaqI | TCGA | 2 cut(s) | 23, 116 |
| TasI | AATT | 2 cut(s) | 191, 255 |
| Tru1I | TTAA | 1 cut(s) | 258 |
| Tru9I | TTAA | 1 cut(s) | 258 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 2 cut(s) | 257, 312 |
| TspGWI | ACGGA | 2 cut(s) | 83, 280 |
| VspI | ATTAAT | 1 cut(s) | 258 |
| XapI | RAATTY | 1 cut(s) | 191 |