RLG00000023104

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003700
Physical Location & Seq
Forward (+)
18133290 .. 18134380
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023104

Sequence Viewer

Length: 354 bp
ATGATGGAAAACTTGCCATCCGAAAAGACCACACTGGTGTCTCTAAGGCTCCGACCCATCAACCGAAACGGGTCTCTGAGCTTCGATAATGGAAGGCAGCGTGTTCTTGAGCTACTCCAGTATAGTGGCTCGGTACTCTTGAATCTTCACCGCCATTTCGGTGACTTGGCACTCCAACTCGTCCAGCTCGTCGGCGTCGGGGCTAGAGGCCATGTGAGGAGGGATGAGGATGTTAGCCCAGTAGTCGGCCCATCTCGGGTCGTTCTCGTAGTTGTAAGCCGCCGCCGCTATCTTCTTCAGCTTCTGTGGGTCGTCCGTTTTCAGCGACGATCGGACTTTGTACGAGGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.41

Weight (kDa)

11.5

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 151, 280, 283, 286
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 135, 342
AfiI CCNNNNNNNGG 2 cut(s) 245, 256
AgsI TTSAA 1 cut(s) 142
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 4 cut(s) 81, 112, 187, 301
AluI AGCT 4 cut(s) 81, 112, 187, 301
Alw26I GTCTC 2 cut(s) 45, 78
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 2 cut(s) 208, 247
ApeKI GCWGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 140, 173
AvaI CYCGRG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 109
BccI CCATC 3 cut(s) 25, 65, 259
BcoDI GTCTC 2 cut(s) 45, 78
BfaI CTAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 98, 280, 283, 286
BlsI GCNGC 4 cut(s) 99, 281, 284, 287
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 256
Bse1I ACTGG 3 cut(s) 39, 118, 239
BseGI GGATG 3 cut(s) 17, 229, 235
BseLI CCNNNNNNNGG 2 cut(s) 245, 256
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 39, 118, 239
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 2 cut(s) 210, 249
BsiEI CGRYCG 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 245, 256
BsmAI GTCTC 2 cut(s) 45, 78
BsnI GGCC 2 cut(s) 210, 249
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 255
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 4 cut(s) 151, 280, 283, 286
BspANI GGCC 2 cut(s) 210, 249
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 78
BsrI ACTGG 3 cut(s) 39, 118, 239
BssMI GATC 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 44, 77
BstF5I GGATG 3 cut(s) 17, 229, 235
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 2 cut(s) 45, 78
BstMBI GATC 1 cut(s) 329
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 210, 249
BtsCI GGATG 3 cut(s) 17, 229, 235
BtsIMutI CAGTG 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 134, 341
CviAII CATG 1 cut(s) 212
CviQI GTAC 2 cut(s) 134, 341
DdeI CTNAG 2 cut(s) 44, 77
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 255
FaeI CATG 1 cut(s) 215
FaiI YATR 2 cut(s) 123, 213
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 4 cut(s) 98, 280, 283, 286
FokI GGATG 3 cut(s) 4, 236, 242
Fsp4HI GCNGC 4 cut(s) 98, 280, 283, 286
FspBI CTAG 1 cut(s) 204
GluI GCNGC 4 cut(s) 98, 280, 283, 286
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 210, 249
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 215
HinfI GANTC 1 cut(s) 142
HphI GGTGA 2 cut(s) 140, 173
Hpy188I TCNGA 4 cut(s) 22, 53, 78, 334
Hpy188III TCNNGA 2 cut(s) 107, 139
Hpy99I CGWCG 3 cut(s) 194, 200, 330
HpyAV CCTTC 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 2 cut(s) 44, 77
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 20, 131, 197, 252
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 3 cut(s) 137, 284, 287
MmeI TCCRAC 2 cut(s) 76, 199
MnlI CCTC 5 cut(s) 200, 210, 213, 220, 338
MslI CAYNNNNRTG 2 cut(s) 35, 159
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 99, 281, 284, 287
Ple19I CGATCG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 304
PvuI CGATCG 1 cut(s) 332
RsaI GTAC 2 cut(s) 135, 342
RsaNI GTAC 2 cut(s) 134, 341
RseI CAYNNNNRTG 2 cut(s) 35, 159
SatI GCNGC 4 cut(s) 98, 280, 283, 286
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 248
SetI ASST 4 cut(s) 83, 114, 189, 303
SmiMI CAYNNNNRTG 2 cut(s) 35, 159
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SsiI CCGC 4 cut(s) 151, 280, 283, 286
SspMI CTAG 1 cut(s) 204
TaqI TCGA 1 cut(s) 84
TauI GCSGC 3 cut(s) 282, 285, 288
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 39
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.