Rmu_sc0003092.1_g000049

carboxylesterase 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003092.1
OG0003700
Physical Location & Seq
Reverse (-)
111442 .. 111967
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003092.1_g000049.1.cds

Sequence Viewer

Length: 483 bp
atggcccccgaccaagccgacgccgaaggcgacctctcctcctccccccaagacgacgtcattgacgaggacgtcgacgactctgcctctcctttctccacctccgatggtgtcacctcccgactcgaagaaaccatcgcagccgccaatcccttgttcgacgacggcgtcgccaccaaggacatccacatcgatccttttacttctctatctattcaattcttcctccccgaatccgctctcaacccgctggagccctcctgtaaatctaggccgttccatccttccaaccgcaatagccgctgcaacgtggtggtggcgaatacgttgagagccgagccgaggacgaacggctacggcttcagcaacttcatcgaggggttgaatttgatggccggagtaggctccggggtttacagagggtactcgccgggtcggacgaagcaagagattacagccactgattcgattaagttcgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

160

Amino Acids

17.21

Weight (kDa)

4.37

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 167
AatII GACGTC 2 cut(s) 60, 75
AccBSI CCGCTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 75
AciI CCGC 5 cut(s) 144, 237, 248, 292, 301
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 346
AcyI GRCGYC 4 cut(s) 21, 57, 72, 168
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 218, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AlwI GGATC 1 cut(s) 188
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 3 cut(s) 3, 272, 393
ApeKI GCWGC 2 cut(s) 140, 303
ApoI RAATTY 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 409, 432
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 477
BanII GRGCYC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 152, 290
BccI CCATC 4 cut(s) 101, 143, 288, 385
BceAI ACGGC 4 cut(s) 181, 259, 367, 373
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 355, 389
BcnI CCSGG 2 cut(s) 409, 432
BfaI CTAG 1 cut(s) 270
BisI GCNGC 4 cut(s) 141, 144, 301, 304
BlsI GCNGC 4 cut(s) 142, 145, 302, 305
Bme1390I CCNGG 2 cut(s) 409, 432
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 255, 406
BmrFI CCNGG 2 cut(s) 409, 432
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 409, 432
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 4 cut(s) 21, 57, 72, 168
BsaJI CCNNGG 3 cut(s) 177, 341, 408
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 342
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 177, 341, 408
BseGI GGATG 2 cut(s) 183, 280
BseLI CCNNNNNNNGG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 28, 31
BseXI GCAGC 2 cut(s) 152, 290
BshFI GGCC 3 cut(s) 5, 274, 395
BshVI ATCGAT 1 cut(s) 192
BsiSI CCGG 3 cut(s) 396, 408, 431
BslI CCNNNNNNNGG 1 cut(s) 342
BsnI GGCC 3 cut(s) 5, 274, 395
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 5 cut(s) 144, 237, 248, 292, 301
BspANI GGCC 3 cut(s) 5, 274, 395
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 6, 255, 406
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 477
BsrBI CCGCTC 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 177, 341, 408
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 4 cut(s) 21, 57, 72, 168
BssT1I CCWWGG 1 cut(s) 177
BstACI GRCGYC 4 cut(s) 21, 57, 72, 168
BstBI TTCGAA 1 cut(s) 477
BstF5I GGATG 2 cut(s) 183, 280
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 407, 430
BstV1I GCAGC 2 cut(s) 152, 290
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 3 cut(s) 5, 274, 395
BsuTUI ATCGAT 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 183, 280
BtsIMutI CAGTG 1 cut(s) 459
CaiI CAGNNNCTG 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 2 cut(s) 29, 157
Csp6I GTAC 1 cut(s) 424
CviQI GTAC 1 cut(s) 424
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 2 cut(s) 71, 167
DseDI GACNNNNNNGTC 2 cut(s) 71, 167
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 177
FauI CCCGC 1 cut(s) 255
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 141, 144, 301, 304
FokI GGATG 2 cut(s) 170, 267
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 4 cut(s) 141, 144, 301, 304
FspBI CTAG 1 cut(s) 270
GluI GCNGC 4 cut(s) 141, 144, 301, 304
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 5, 274, 395
HapII CCGG 3 cut(s) 396, 408, 431
HgaI GACGC 2 cut(s) 29, 157
Hin1I GRCGYC 4 cut(s) 21, 57, 72, 168
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 80, 123, 233, 464
HpaII CCGG 3 cut(s) 396, 408, 431
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 76, 415
Hpy188I TCNGA 2 cut(s) 106, 438
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 2 cut(s) 76, 415
Hpy99I CGWCG 7 cut(s) 23, 59, 77, 80, 164, 167, 173
HpyAV CCTTC 2 cut(s) 20, 294
HpyCH4IV ACGT 4 cut(s) 57, 72, 309, 326
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpySE526I ACGT 4 cut(s) 57, 72, 309, 326
Hsp92I GRCGYC 4 cut(s) 21, 57, 72, 168
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 253, 410
LpnPI CCDG 5 cut(s) 236, 274, 409, 421, 444
Lsp1109I GCAGC 2 cut(s) 152, 290
MaeI CTAG 1 cut(s) 270
MaeII ACGT 4 cut(s) 57, 72, 309, 326
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 140, 214
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 218, 385
MlyI GAGTC 2 cut(s) 74, 117
MmeI TCCRAC 2 cut(s) 312, 416
MseI TTAA 1 cut(s) 471
MspA1I CMGCKG 2 cut(s) 250, 303
MspI CCGG 3 cut(s) 396, 408, 431
MspR9I CCNGG 2 cut(s) 409, 432
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 2 cut(s) 409, 432
NdeII GATC 1 cut(s) 193
NlaIV GGNNCC 3 cut(s) 6, 255, 406
NmeAIII GCCGAG 2 cut(s) 361, 366
NmuCI GTSAC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 477
PcsI WCGNNNNNNNCGW 4 cut(s) 27, 63, 72, 165
PfeI GAWTC 2 cut(s) 233, 464
PflFI GACNNNGTC 2 cut(s) 56, 167
PkrI GCNGC 4 cut(s) 142, 145, 302, 305
PleI GAGTC 2 cut(s) 74, 117
PpsI GAGTC 2 cut(s) 74, 117
PspN4I GGNNCC 3 cut(s) 6, 255, 406
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 461
PsyI GACNNNGTC 2 cut(s) 56, 167
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 141, 144, 301, 304
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 74, 117
ScrFI CCNGG 2 cut(s) 409, 432
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 36, 60, 75, 104, 119, 312, 329
SfuI TTCGAA 1 cut(s) 477
SgrDI CGTCGACG 1 cut(s) 74
Sse9I AATT 2 cut(s) 218, 385
SsiI CCGC 5 cut(s) 144, 237, 248, 292, 301
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 407, 430
StyI CCWWGG 1 cut(s) 177
TaiI ACGT 4 cut(s) 60, 75, 312, 329
TaqI TCGA 7 cut(s) 75, 126, 159, 192, 375, 467, 477
TasI AATT 2 cut(s) 218, 385
TauI GCSGC 2 cut(s) 146, 303
TfiI GAWTC 2 cut(s) 233, 464
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 140, 303
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 361
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 2 cut(s) 56, 167
XapI RAATTY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 270
ZraI GACGTC 2 cut(s) 58, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.