Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

51102541 .. 51104145

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG248700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCCCCGACCAAGACGACATCGTTGACGAGGACGTCAACGACTCCGCCTCTCCTTCCTCCACCTATGATGGTGTCACCTCCCGACTCGAAGAAACCATCGCAGCCGCCAATCCCTTGTTCGATGACGGTGTCGCCACCAAGCACATCCACATCGATCCTTTTACTTCTCTATCTATTCGAATCTTCCTCCCTGAATCTGCTCTCAACCCGCCGGAGCCCTCAGCGTCGGAAAATAGGTACCTGGCGGCGTTTGAAGACAGGTTGAATTGGTTGGGGAAGCAAGCTGATGTTGCTATAATGTGGTTTGCATTTCTTGCGGACGTTTTAGAGTTGATTAGAACTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

4.09

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	39
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AciI	CCGC	5 cut(s)	48, 108, 212, 248, 320
AclWI	GGATC	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	257, 268
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	2 cut(s)	65, 107
BciT130I	CCWGG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	105, 108, 249
BlsI	GCNGC	3 cut(s)	106, 109, 250
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 219, 242
BmrFI	CCNGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	223
Bpu14I	TTCGAA	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	215
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	5 cut(s)	48, 108, 212, 248, 320
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	236
BspDI	ATCGAT	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	6, 219, 242
BspPI	GGATC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	240
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	131, 346
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 317
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	241
CviJI	RGCY	4 cut(s)	5, 107, 220, 287
CviKI_1	RGCY	4 cut(s)	5, 107, 220, 287
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	222
FaiI	YATR	2 cut(s)	69, 299
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	105, 108, 249
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	105, 108, 249
GluI	GCNGC	3 cut(s)	105, 108, 249
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	36
HincII	GTYRAC	2 cut(s)	28, 40
HindII	GTYRAC	2 cut(s)	28, 40
HinfI	GANTC	4 cut(s)	44, 87, 183, 197
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	28, 40
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	2 cut(s)	28, 40
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	2 cut(s)	131, 346
HpyCH4IV	ACGT	2 cut(s)	36, 324
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 317
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	2 cut(s)	36, 324
Hsp92I	GRCGYC	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	207, 228, 230, 247, 257
Lsp1109I	GCAGC	1 cut(s)	116
MaeII	ACGT	2 cut(s)	36, 324
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	104, 178, 269
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	38, 81
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	25, 61, 70, 91, 200, 232
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	293, 317
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	6, 219, 242
NmuCI	GTSAC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	183, 197
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	106, 109, 250
PleI	GAGTC	2 cut(s)	38, 81
PpsI	GAGTC	2 cut(s)	38, 81
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	6, 219, 242
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	3 cut(s)	105, 108, 249
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	38, 81
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	39, 68, 83, 242, 246, 266, 289, 327
SfuI	TTCGAA	1 cut(s)	181
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	5 cut(s)	48, 108, 212, 248, 320
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	131, 346
TaiI	ACGT	2 cut(s)	39, 327
TaqI	TCGA	4 cut(s)	90, 123, 156, 181
TasI	AATT	1 cut(s)	268
TauI	GCSGC	2 cut(s)	110, 251
TfiI	GAWTC	2 cut(s)	183, 197
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	131
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.