Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001822.1

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

53412 .. 56020

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001822.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggctcccgaccaagacgatgtcgaaggcaacctgtccttctctccccaaaacgacgttgttgacgatgacgacgacttcgcccctcctttctccacctccgatggcatcacctccatcgaggggttgaatttgatggccggagtcggctcagaagtctacagaggctcacctcagatcggagatcgttttcagcgacgatcagacattgtacgaggggaagaagtaggagttctcggcgacgagcttctcgaggtcgaagatggaggcggagatttggttgaggaagggtttgaggtgagtcggcactgggtgagttgggagttgacggaggacttggagatggagaagcaggattggaaggcagaggtgaactcgaaggaaggggaggggtcggaggagttggtggcggcgaggcgcatgagggaggtgtcgagagagagagatagatctagaggcagagatttggttgaggaagggtttgaggtgagtgggatcggtcagtcagcactggacgagttgggagttgacggaggacttggagatggagaagcaggacaggaaagcggaggtggactcgaaggaaggggaggggtcggaggagttggcggcggcaaggcgcatgagggattccggcgaccggtgcctggattccgacgaccggattccggcgaccagttacctgagtccggtagagtttctgatgattctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

25.7

Weight (kDa)

4.22

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	5 cut(s)	270, 410, 567, 609, 612
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	7 cut(s)	123, 179, 640, 647, 661, 668, 689
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	2 cut(s)	420, 622
AsuHPI	GGTGA	6 cut(s)	103, 162, 310, 325, 382, 499
AvaI	CYCGRG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	643
BccI	CCATC	6 cut(s)	98, 125, 130, 257, 337, 539
BciT130I	CCWGG	1 cut(s)	648
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	160
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	3 cut(s)	411, 610, 613
BlsI	GCNGC	3 cut(s)	412, 611, 614
Bme1390I	CCNGG	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	6, 645
BmrFI	CCNGG	1 cut(s)	648
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	319
BplI	GAGNNNNNCTC	4 cut(s)	359, 391, 561, 593
BsaWI	WCCGGW	3 cut(s)	640, 661, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	7 cut(s)	123, 179, 640, 647, 661, 668, 689
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	3 cut(s)	314, 516, 676
BseBI	CCWGG	1 cut(s)	648
BseLI	CCNNNNNNNGG	7 cut(s)	123, 179, 640, 647, 661, 668, 689
BseMII	CTCAG	3 cut(s)	165, 188, 675
BseNI	ACTGG	3 cut(s)	314, 516, 676
BseRI	GAGGAG	2 cut(s)	413, 615
Bsh1285I	CGRYCG	2 cut(s)	641, 662
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	643
BshTI	ACCGGT	1 cut(s)	640
BsiEI	CGRYCG	2 cut(s)	641, 662
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	6 cut(s)	141, 634, 641, 662, 669, 690
BslI	CCNNNNNNNGG	7 cut(s)	123, 179, 640, 647, 661, 668, 689
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	177, 184, 200, 449, 495
BspACI	CCGC	5 cut(s)	270, 410, 567, 609, 612
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	3 cut(s)	164, 187, 676
BspLI	GGNNCC	2 cut(s)	6, 645
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	3 cut(s)	314, 516, 676
BssAI	RCCGGY	1 cut(s)	640
BssMI	GATC	5 cut(s)	177, 184, 200, 449, 495
Bst2UI	CCWGG	1 cut(s)	648
BstDEI	CTNAG	4 cut(s)	151, 174, 684, 717
BstHHI	GCGC	2 cut(s)	420, 622
BstKTI	GATC	5 cut(s)	180, 187, 203, 452, 498
BstMBI	GATC	5 cut(s)	177, 184, 200, 449, 495
BstMCI	CGRYCG	2 cut(s)	641, 662
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	307, 509
CfoI	GCGC	2 cut(s)	420, 622
Cfr10I	RCCGGY	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	2 cut(s)	421, 623
CviJI	RGCY	5 cut(s)	5, 140, 150, 168, 247
CviKI_1	RGCY	5 cut(s)	5, 140, 150, 168, 247
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	4 cut(s)	151, 174, 684, 717
DpnI	GATC	5 cut(s)	179, 186, 202, 451, 497
DpnII	GATC	5 cut(s)	177, 184, 200, 449, 495
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	646
FaeI	CATG	2 cut(s)	424, 626
FaiI	YATR	2 cut(s)	422, 624
FatI	CATG	2 cut(s)	420, 622
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	411, 610, 613
Fsp4HI	GCNGC	3 cut(s)	411, 610, 613
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	2 cut(s)	419, 621
GluI	GCNGC	3 cut(s)	411, 610, 613
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	6 cut(s)	141, 634, 641, 662, 669, 690
HhaI	GCGC	2 cut(s)	420, 622
Hin1II	CATG	2 cut(s)	424, 626
Hin6I	GCGC	2 cut(s)	418, 620
HinP1I	GCGC	2 cut(s)	418, 620
HincII	GTYRAC	3 cut(s)	64, 327, 529
HindII	GTYRAC	3 cut(s)	64, 327, 529
HinfI	GANTC	8 cut(s)	144, 301, 576, 630, 651, 665, 686, 707
HpaII	CCGG	6 cut(s)	141, 634, 641, 662, 669, 690
HphI	GGTGA	6 cut(s)	103, 162, 310, 325, 382, 499
Hpy166II	GTNNAC	6 cut(s)	64, 160, 327, 373, 529, 575
Hpy188I	TCNGA	9 cut(s)	103, 154, 177, 182, 205, 397, 599, 656, 703
Hpy188III	TCNNGA	4 cut(s)	8, 251, 435, 453
Hpy8I	GTNNAC	6 cut(s)	64, 160, 327, 373, 529, 575
Hpy99I	CGWCG	5 cut(s)	59, 77, 201, 245, 660
HpyAV	CCTTC	9 cut(s)	20, 49, 281, 355, 373, 377, 470, 575, 579
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	4 cut(s)	151, 174, 684, 717
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	424, 626
HspAI	GCGC	2 cut(s)	418, 620
Kzo9I	GATC	5 cut(s)	177, 184, 200, 449, 495
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	5 cut(s)	179, 186, 202, 451, 497
MboI	GATC	5 cut(s)	177, 184, 200, 449, 495
MboII	GAAGA	2 cut(s)	233, 272
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	4 cut(s)	153, 310, 570, 695
MmeI	TCCRAC	3 cut(s)	375, 577, 679
MspI	CCGG	6 cut(s)	141, 634, 641, 662, 669, 690
MspR9I	CCNGG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	643
NdeII	GATC	5 cut(s)	177, 184, 200, 449, 495
NlaIII	CATG	2 cut(s)	424, 626
NlaIV	GGNNCC	2 cut(s)	6, 645
NmeAIII	GCCGAG	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	4 cut(s)	63, 72, 193, 249
PfeI	GAWTC	4 cut(s)	630, 651, 665, 707
PflFI	GACNNNGTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	3 cut(s)	412, 611, 614
PleI	GAGTC	4 cut(s)	152, 309, 570, 694
PpsI	GAGTC	4 cut(s)	152, 309, 570, 694
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	2 cut(s)	6, 645
PsuI	RGATCY	1 cut(s)	449
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	411, 610, 613
Sau3AI	GATC	5 cut(s)	177, 184, 200, 449, 495
SchI	GAGTC	4 cut(s)	153, 310, 570, 695
ScrFI	CCNGG	1 cut(s)	648
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	5 cut(s)	270, 410, 567, 609, 612
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	646
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	7 cut(s)	24, 120, 252, 258, 377, 434, 579
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	1 cut(s)	130
TauI	GCSGC	3 cut(s)	413, 612, 615
TfiI	GAWTC	4 cut(s)	630, 651, 665, 707
TscAI	CASTG	2 cut(s)	314, 516
TspGWI	ACGGA	2 cut(s)	344, 546
TspRI	CASTG	2 cut(s)	314, 516
Tth111I	GACNNNGTC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.