Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

27126769 .. 27128475

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTAATGACGTCAGGGCTAGAGGCCATGTGAGGAGGGAAGAGGATGTTGGCCCAGTAGTCGGCCCATCTCAGGTCGTTGTAGTCATAAGCCGCCACCGCTATCTTTTTCAGCTTCTGTGGGTCTTCTCTCTCCTTCCCTATTATTCAAGATCGGCGATGCTTCCTACTCCTCTGGGTCTCTTTTACTTTTACTCACCTCAGATCGGAGATCGTTTTCAGCGACGATCGGACTTTGTACGAGGGGAAGAAGTAGGAGTTCTCGGCAACGAGCTTCTCGAGGTTGGAGATTTGGTCGAGGCAGGGTTTGAGGTGAGTGGGATCAGTGAGTCGGCATTGGGCGAGTTGGCAGTTGACGGAGGACTTGGAGATGGAGAAGCAGGAGAGGAAGGCGGAGGTGGACTTGAAGGAAGGGGAGGAGTTGGTGGCGGTGAGGCTGTGTTGGATGTATACTATATGAACACAAAATCCAAAACAAATGAGGCAAAGCAAAAGAAACAGATGAATCTAAAGCACAGACCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.03

Weight (kDa)

5.28

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	4 cut(s)	94, 100, 393, 429
AclWI	GGATC	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	62, 73, 206
AgsI	TTSAA	2 cut(s)	150, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	2 cut(s)	115, 274
AluI	AGCT	2 cut(s)	115, 274
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	25, 52, 64
AspS9I	GGNCC	2 cut(s)	53, 65
AsuHPI	GGTGA	3 cut(s)	189, 325, 443
AvaI	CYCGRG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	2 cut(s)	76, 365
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	53, 65
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 73, 206
Bse1I	ACTGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	52, 451
BseLI	CCNNNNNNNGG	3 cut(s)	62, 73, 206
BseMII	CTCAG	2 cut(s)	86, 215
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	3 cut(s)	49, 162, 432
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	27, 54, 66
BsiEI	CGRYCG	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	62, 73, 206
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	27, 54, 66
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	152, 204, 211, 227, 321
BspACI	CCGC	4 cut(s)	94, 100, 393, 429
BspANI	GGCC	3 cut(s)	27, 54, 66
BspCNI	CTCAG	2 cut(s)	85, 214
BspPI	GGATC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	5 cut(s)	152, 204, 211, 227, 321
BssNAI	GTATAC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	72, 201
BstF5I	GGATG	2 cut(s)	52, 451
BstKTI	GATC	5 cut(s)	155, 207, 214, 230, 324
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	5 cut(s)	152, 204, 211, 227, 321
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	27, 54, 66
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	52, 451
BtsIMutI	CAGTG	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	53, 65
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	9 cut(s)	5, 20, 27, 54, 66, 93, 115, 274, 437
CviKI_1	RGCY	9 cut(s)	5, 20, 27, 54, 66, 93, 115, 274, 437
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	72, 201
DpnI	GATC	5 cut(s)	154, 206, 213, 229, 323
DpnII	GATC	5 cut(s)	152, 204, 211, 227, 321
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	278
FaeI	CATG	1 cut(s)	32
FaiI	YATR	5 cut(s)	30, 89, 451, 456, 458
FatI	CATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	59, 458
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	27, 54, 66
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	329, 505
HphI	GGTGA	3 cut(s)	189, 325, 443
Hpy166II	GTNNAC	3 cut(s)	355, 401, 451
Hpy188I	TCNGA	3 cut(s)	204, 209, 232
Hpy188III	TCNNGA	2 cut(s)	150, 278
Hpy8I	GTNNAC	3 cut(s)	355, 401, 451
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	4 cut(s)	146, 383, 401, 405
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	72, 201
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	5 cut(s)	152, 204, 211, 227, 321
LpnPI	CCDG	5 cut(s)	59, 69, 161, 288, 366
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	12
MalI	GATC	5 cut(s)	154, 206, 213, 229, 323
MboI	GATC	5 cut(s)	152, 204, 211, 227, 321
MboII	GAAGA	3 cut(s)	53, 118, 260
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	265, 423
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	5 cut(s)	152, 204, 211, 227, 321
NlaIII	CATG	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	2 cut(s)	220, 276
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	95
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	53, 65
PstNI	CAGNNNCTG	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	5 cut(s)	152, 204, 211, 227, 321
Sau96I	GGNCC	2 cut(s)	53, 65
SchI	GAGTC	1 cut(s)	338
SetI	ASST	8 cut(s)	15, 78, 117, 202, 276, 285, 315, 400
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SsiI	CCGC	4 cut(s)	94, 100, 393, 429
SspMI	CTAG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	279, 297
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	505
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	473, 518
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	21
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.