Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

25239495 .. 25239740

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG153600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCCCCCGACCAAGACGATGCCGAAGGCAACCTGTCCCAAAACGACGTCCTAGACGATGACTTCGCCTCTCCTTTCTCCACCTCCGATGGCGTCACCTCCGTCGAGGGGTTGAATTTGATGGCCGAAGTCGGCTCCGAAGTCTACAGAGGGTACTTGCCAGTGAATTCAGCTAAGAAGAGTCAGAAATTGCCGGTGATTTTGCAATTTCACTGCGGTGGTTGGGGAAATTGCCACCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

81

Amino Acids

8.67

Weight (kDa)

4.2

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	115, 166
AcyI	GRCGYC	2 cut(s)	48, 93
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AoxI	GGCC	2 cut(s)	3, 123
ApoI	RAATTY	2 cut(s)	115, 166
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	88, 208
BccI	CCATC	2 cut(s)	83, 115
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 136
BmsI	GCATC	1 cut(s)	10
BsaHI	GRCGYC	2 cut(s)	48, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	5, 125
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 125
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	5, 125
BspLI	GGNNCC	2 cut(s)	6, 136
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	48, 93
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	48, 93
BstDEI	CTNAG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	5, 125
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	168, 211
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	4 cut(s)	5, 125, 135, 173
CviKI_1	RGCY	4 cut(s)	5, 125, 135, 173
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	5, 125
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	48, 93
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	88, 208
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	88, 139, 186
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	2 cut(s)	50, 107
HpyAV	CCTTC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	48, 93
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	47, 174, 207
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	5 cut(s)	115, 166, 188, 206, 229
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	79, 94, 100, 109, 143
MseI	TTAA	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	6, 136
NmuCI	GTSAC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	6, 136
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	190
SetI	ASST	6 cut(s)	36, 51, 86, 101, 175, 240
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	145
SgeI	CNNG	8 cut(s)	20, 26, 46, 65, 118, 169, 173, 206
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	115, 166, 188, 206, 229
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	115, 166, 188, 206, 229
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TscAI	CASTG	2 cut(s)	168, 218
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	168, 218
XapI	RAATTY	2 cut(s)	115, 166
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.