Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

78545370 .. 78545881

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCCCCGACCAAGACGACGCTGAAGGCAACCTCTCCTCCTCCCCCCAAGACGACGTCATTGGCGAGGATGACAACGTCAACTTCGACGACTCCGCCTCTCCTCTCTCTACCTCCGATGGCGTCACCTCCCGACCCGAAGAAGCCATCGCTACCACCAATCCCTTATTCGAGGACGACATCGCCACCAAGGACATCCACATCGATCTTTTTACTTCTCTATCTATTCGAATCTTCCTCCCCGAGTTTGCTCTCAACCCGCCGGAGCCCTTCGATAAATCTAGGAAGTTGAAGAAGATAGCGGCGGCGACTTACGACTACGAGAATGACCCGAGATGGGCCGACTACTGGGCCAACATCCTCATCCCTCCTCACATGGTCTCTAGCTCTAACGTCATCAACCATTTCGAGCAGAATTCTATAAGCGCTATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

146

Amino Acids

16.07

Weight (kDa)

4.09

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	4 cut(s)	96, 260, 302, 305
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	57, 123
AfeI	AGCGCT	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	337, 348
AgsI	TTSAA	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	385
Ama87I	CYCGRG	2 cut(s)	242, 331
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	3 cut(s)	3, 339, 351
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	4, 339, 351
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	229
AvaI	CYCGRG	2 cut(s)	242, 331
BanII	GRGCYC	1 cut(s)	270
BccI	CCATC	3 cut(s)	113, 155, 330
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	2 cut(s)	282, 384
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmeT110I	CYCGRG	2 cut(s)	242, 331
BmgT120I	GGNCC	3 cut(s)	4, 339, 351
BmiI	GGNNCC	2 cut(s)	6, 267
BmrI	ACTGGG	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	229
Bsa29I	ATCGAT	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	57, 123
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 348
Bse1I	ACTGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	76, 195, 357, 363
BseLI	CCNNNNNNNGG	2 cut(s)	337, 348
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	4 cut(s)	28, 31, 93, 360
BshFI	GGCC	3 cut(s)	5, 341, 353
BshVI	ATCGAT	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	242, 331
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	337, 348
BsmAI	GTCTC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	5, 341, 353
Bso31I	GGTCTC	1 cut(s)	385
BsoBI	CYCGRG	2 cut(s)	242, 331
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	4 cut(s)	96, 260, 302, 305
BspANI	GGCC	3 cut(s)	5, 341, 353
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	6, 267
BspT104I	TTCGAA	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	2 cut(s)	57, 123
BssT1I	CCWWGG	1 cut(s)	189
BstACI	GRCGYC	2 cut(s)	57, 123
BstBI	TTCGAA	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	76, 195, 357, 363
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	5, 341, 353
BsuTUI	ATCGAT	1 cut(s)	204
BtgZI	GCGATG	2 cut(s)	133, 166
BtsCI	GGATG	4 cut(s)	76, 195, 357, 363
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	4, 339, 351
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	2 cut(s)	29, 112
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	6 cut(s)	5, 146, 268, 341, 353, 387
CviKI_1	RGCY	6 cut(s)	5, 146, 268, 341, 353, 387
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	385
Eco47III	AGCGCT	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	2 cut(s)	242, 331
EcoRI	GAATTC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	379
FaiI	YATR	3 cut(s)	377, 422, 431
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	4 cut(s)	83, 182, 344, 350
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	2 cut(s)	282, 384
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	303, 306
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 341, 353
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	2 cut(s)	29, 112
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	2 cut(s)	57, 123
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	92, 231
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	3 cut(s)	23, 59, 92
HpyAV	CCTTC	2 cut(s)	20, 280
HpyCH4IV	ACGT	3 cut(s)	57, 78, 393
HpySE526I	ACGT	3 cut(s)	57, 78, 393
Hsp92I	GRCGYC	2 cut(s)	57, 123
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	2 cut(s)	276, 334
MaeI	CTAG	2 cut(s)	282, 384
MaeII	ACGT	3 cut(s)	57, 78, 393
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	152, 226, 304, 307
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	86
MspI	CCGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	6, 267
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 84
PfeI	GAWTC	1 cut(s)	231
PflFI	GACNNNGTC	2 cut(s)	56, 77
PkrI	GCNGC	2 cut(s)	304, 307
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	6, 267
PspPI	GGNCC	3 cut(s)	4, 339, 351
PsyI	GACNNNGTC	2 cut(s)	56, 77
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	3 cut(s)	4, 339, 351
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	36, 60, 81, 116, 131, 389, 396
SfuI	TTCGAA	1 cut(s)	229
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	4 cut(s)	96, 260, 302, 305
SspMI	CTAG	2 cut(s)	282, 384
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	3 cut(s)	60, 81, 396
TaqI	TCGA	6 cut(s)	87, 171, 204, 229, 273, 408
TasI	AATT	1 cut(s)	415
TauI	GCSGC	2 cut(s)	305, 308
TfiI	GAWTC	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
Tth111I	GACNNNGTC	2 cut(s)	56, 77
XapI	RAATTY	1 cut(s)	415
XspI	CTAG	2 cut(s)	282, 384
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.