Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Forward (+)

37816755 .. 37821836

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCCCTCGACCAAGATGCCGCCGAAGGCAACCCCTCCTCCTCCCCCCAAGACAACGTCTTTGGCGACTATGACGATGACGATGACGATGACGACGTCGACGACTCTGCCTCTCCTTTCTCCACCTTCGATGGCGTCACCTCCCGACCCGAAGAAGCCATCGCCGCCGCCAATCCCTTATTTGCGGACGATGTCGCCACCAAGGACATCCACATCGATCTTTTCACTTCTCTATCTATTCGAATCTTCCTCTCCGAGTTTGCTCTCAACCACCGGAGCCCTCCGATAAACCTAGGGATGAGTATGATGGGAATATTGCAATTAGCAAATTTGTTGTTTCTGATTCCATTTCTTGAGTATGATGAAAATGACAATCCTCCCGGAGCCGTTTTCCCAACTAAAATGAATGTCGAGGCTGGTTCTGAAGGCAATGCTTTATCTTTTGAGCTCATGGATCATGGTCGTCGCAGGCACGATGGTGGCTGTCTGAGATTGTTGGTTGGGGAGGGTCGGTGGATACTGTTGAATAGAGATGGCGTTGCTTGGCATTCAAACCGAGTTGAATTACTGGATGTGGAGTGTGGAATGTGGAAGGATGACTCATTGGTTTGCATAGTTAAGGAGCGAAACTCGGTCCGTGATTGTGGGCTTTGGTGGGTATTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

222

Amino Acids

24.65

Weight (kDa)

4.24

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	4 cut(s)	21, 165, 168, 185
AclWI	GGATC	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	2 cut(s)	96, 135
AgsI	TTSAA	3 cut(s)	526, 552, 563
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspA2I	CCTAGG	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	4, 634
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	634
AvrII	CCTAGG	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	281, 450
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	5 cut(s)	125, 167, 301, 470, 527
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	3 cut(s)	33, 89, 123
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	381
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	3 cut(s)	21, 165, 168
BlnI	CCTAGG	1 cut(s)	292
BlsI	GCNGC	3 cut(s)	22, 166, 169
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	4, 634
BmiI	GGNNCC	2 cut(s)	278, 385
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	96, 135
BsaJI	CCNNGG	2 cut(s)	201, 292
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 497, 527
Bse1I	ACTGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	201, 292
BseGI	GGATG	4 cut(s)	207, 303, 577, 601
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	2 cut(s)	28, 31
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	274, 381
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	281, 450
Bsp143I	GATC	2 cut(s)	217, 454
BspACI	CCGC	4 cut(s)	21, 165, 168, 185
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	480
BspDI	ATCGAT	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	278, 385
BspPI	GGATC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	2 cut(s)	201, 292
BssMI	GATC	2 cut(s)	217, 454
BssNI	GRCGYC	2 cut(s)	96, 135
BssT1I	CCWWGG	2 cut(s)	201, 292
Bst4CI	ACNGT	1 cut(s)	522
BstACI	GRCGYC	2 cut(s)	96, 135
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	488
BstF5I	GGATG	4 cut(s)	207, 303, 577, 601
BstKTI	GATC	2 cut(s)	220, 457
BstMBI	GATC	2 cut(s)	217, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	4 cut(s)	207, 303, 577, 601
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	4, 634
ClaI	ATCGAT	1 cut(s)	216
CpoI	CGGWCCG	1 cut(s)	634
CseI	GACGC	1 cut(s)	124
CspI	CGGWCCG	1 cut(s)	634
CviAII	CATG	2 cut(s)	451, 458
CviJI	RGCY	8 cut(s)	5, 158, 279, 386, 416, 448, 483, 649
CviKI_1	RGCY	8 cut(s)	5, 158, 279, 386, 416, 448, 483, 649
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	219, 456
DpnII	GATC	2 cut(s)	217, 454
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	201, 292
Eco24I	GRGCYC	2 cut(s)	281, 450
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	201, 292
EcoT38I	GRGCYC	2 cut(s)	281, 450
ErhI	CCWWGG	2 cut(s)	201, 292
FaeI	CATG	2 cut(s)	454, 461
FaiI	YATR	6 cut(s)	72, 305, 360, 452, 459, 614
FatI	CATG	2 cut(s)	450, 457
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	21, 165, 168
FokI	GGATG	4 cut(s)	194, 310, 584, 608
FriOI	GRGCYC	2 cut(s)	281, 450
Fsp4HI	GCNGC	3 cut(s)	21, 165, 168
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	3 cut(s)	21, 165, 168
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	274, 381
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	2 cut(s)	96, 135
Hin1II	CATG	2 cut(s)	454, 461
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	104, 243, 343, 599
HpaII	CCGG	2 cut(s)	274, 381
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	256, 285, 342, 424, 489
Hpy188III	TCNNGA	2 cut(s)	144, 353
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	98, 101, 104, 468
HpyAV	CCTTC	4 cut(s)	20, 136, 419, 586
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	2 cut(s)	57, 96
HpyCH4V	TGCA	2 cut(s)	319, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	2 cut(s)	57, 96
Hsp92I	GRCGYC	2 cut(s)	96, 135
Hsp92II	CATG	2 cut(s)	454, 461
Kzo9I	GATC	2 cut(s)	217, 454
LmnI	GCTCC	3 cut(s)	276, 383, 622
LpnPI	CCDG	5 cut(s)	287, 394, 402, 454, 554
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	57, 96
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	219, 456
MboI	GATC	2 cut(s)	217, 454
MboII	GAAGA	2 cut(s)	164, 238
MhlI	GDGCHC	2 cut(s)	281, 450
MluCI	AATT	3 cut(s)	320, 328, 563
MlyI	GAGTC	2 cut(s)	98, 593
MseI	TTAA	2 cut(s)	618, 662
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	2 cut(s)	274, 381
MspR9I	CCNGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	2 cut(s)	217, 454
NlaIII	CATG	2 cut(s)	454, 461
NlaIV	GGNNCC	2 cut(s)	278, 385
NmuCI	GTSAC	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 93, 99
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	243, 343
PflFI	GACNNNGTC	3 cut(s)	56, 95, 191
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	22, 166, 169
PleI	GAGTC	2 cut(s)	98, 593
PpsI	GAGTC	2 cut(s)	98, 593
Psp124BI	GAGCTC	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	278, 385
PspPI	GGNCC	2 cut(s)	4, 634
PsyI	GACNNNGTC	3 cut(s)	56, 95, 191
RseI	CAYNNNNRTG	1 cut(s)	477
Rsr2I	CGGWCCG	1 cut(s)	634
RsrII	CGGWCCG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	618, 662
SatI	GCNGC	3 cut(s)	21, 165, 168
Sau3AI	GATC	2 cut(s)	217, 454
Sau96I	GGNCC	2 cut(s)	4, 634
SchI	GAGTC	2 cut(s)	98, 593
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	281, 450
SetI	ASST	6 cut(s)	60, 99, 128, 143, 294, 450
SfaNI	GCATC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	241
SgrDI	CGTCGACG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	320, 328, 563
SsiI	CCGC	4 cut(s)	21, 165, 168, 185
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	201, 292
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	2 cut(s)	60, 99
TaqI	TCGA	6 cut(s)	9, 99, 129, 216, 241, 411
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	3 cut(s)	320, 328, 563
TauI	GCSGC	3 cut(s)	23, 167, 170
TfiI	GAWTC	2 cut(s)	243, 343
Tru1I	TTAA	2 cut(s)	618, 662
Tru9I	TTAA	2 cut(s)	618, 662
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	378, 419
TspGWI	ACGGA	1 cut(s)	626
Tth111I	GACNNNGTC	3 cut(s)	56, 95, 191
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.