Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003700

Physical Location & Seq

Genomic Coordinates Reverse (-)

46391123 .. 46405370

Gene Structure 14248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCACGAAGAGGAAGAGAGAGTCTGGGAGCAGTAGCAACAGTCGTTGCAGATTATCAAAATAGAGCCCCAATTCCCGTTGTGGCAACTTCAAAGCCTCCAAAGCATCCTAGGGTCCCAAAGGCTGCAAGGACAGCAACATCTACTTCTAAAGCTGAAGGTCGTGGAAGCTGCAAGAGTGGAAAAATGGATAATGTTTACACACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCTATCAATACCCTGGAACCTGTACTTCGGGCAACGAACAGAAACAATGAGAACTATTGTTCTCCAAATGTTCCAGCAATGACAAAAATTCTGCTTGAGGATGTCGAAAAGATTTTCAAGACTACTACTGGAACTCCATTTATGATCCCTACCACAGCTTTGTTCAGTACGTTGGATGCCTTTAATCCAGAATCTAGTGAAGATGGAGGAAAAGAAGCTTTCCAAAGTATTTCAAAGTTTACAATTCAGTATTACTTTGCCTTTCAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

168

Amino Acids

18.34

Weight (kDa)

9.58

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003700)

Species	Orthologous Gene IDs
malus_domestica	MD17G1090900.v1.1
pyrus_communis	pycom01g15950
rosa_chinensis	RchiOBHm_Chr2g0120141
rosa_laevigata	RLG00000013180 RLG00000023104 RLG00000027431 RLG00000034880 RLG00000036296
rosa_multiflora	Rmu_co8384813.1_g000001 Rmu_sc0000147.1_g000060 Rmu_sc0001211.1_g000050 Rmu_sc0001822.1_g000010 Rmu_sc0003092.1_g000049 Rmu_sc0003116.1_g000046
rosa_roxburghii	Rroxscaffold_3G00244520 Rroxscaffold_7G00217730
rosa_rugosa	Rorug02G0433800 Rorug03G0358900.1
rosa_samantha	Rh1AG167400 Rh1AG187500 Rh1AG231400 Rh1AG231700 Rh1BG153600 Rh1BG232500 Rh1BG232600 Rh1CG215500 Rh1CG248700 Rh1DG260200 Rh2DG308700 Rh4BG034400 Rh6AG041000 Rh6AG041100 Rh6AG041400 Rh6BG036700
rosa_wichuraiana	Rw2G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	258, 403
AgsI	TTSAA	3 cut(s)	93, 352, 468
AjnI	CCWGG	3 cut(s)	205, 229, 246
AluBI	AGCT	4 cut(s)	155, 171, 392, 452
AluI	AGCT	4 cut(s)	155, 171, 392, 452
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	125, 171
ApoI	RAATTY	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	115, 233
AvaII	GGWCC	1 cut(s)	115
AvrII	CCTAGG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	112, 158
BccI	CCATC	2 cut(s)	225, 431
BciT130I	CCWGG	3 cut(s)	207, 231, 248
BfaI	CTAG	2 cut(s)	111, 429
BisI	GCNGC	2 cut(s)	126, 172
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	2 cut(s)	127, 173
Bme1390I	CCNGG	3 cut(s)	207, 231, 248
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 233
BmiI	GGNNCC	4 cut(s)	116, 117, 215, 252
BmrFI	CCNGG	3 cut(s)	207, 231, 248
BmsI	GCATC	2 cut(s)	115, 400
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	110, 230, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	207, 231, 248
BseDI	CCNNGG	3 cut(s)	110, 230, 246
BseGI	GGATG	3 cut(s)	106, 340, 415
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	112, 158
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	116, 117, 215, 252
BspPI	GGATC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	110, 230, 246
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	207, 231, 248
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	4, 10
BstF5I	GGATG	3 cut(s)	106, 340, 415
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 134
BstNI	CCWGG	3 cut(s)	207, 231, 248
BstSCI	CCNGG	3 cut(s)	205, 229, 246
BstV1I	GCAGC	2 cut(s)	112, 158
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	106, 340, 415
Cfr13I	GGNCC	2 cut(s)	115, 233
Csp6I	GTAC	2 cut(s)	257, 402
CviAII	CATG	1 cut(s)	504
CviJI	RGCY	8 cut(s)	68, 97, 125, 155, 171, 235, 392, 452
CviKI_1	RGCY	8 cut(s)	68, 97, 125, 155, 171, 235, 392, 452
CviQI	GTAC	2 cut(s)	257, 402
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	4, 10
EarI	CTCTTC	2 cut(s)	4, 10
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	177
EcoO109I	RGGNCCY	2 cut(s)	115, 233
EcoRII	CCWGG	3 cut(s)	205, 229, 246
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	507
FaiI	YATR	2 cut(s)	377, 505
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	503
Fnu4HI	GCNGC	2 cut(s)	126, 172
FokI	GGATG	3 cut(s)	93, 347, 422
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	126, 172
FspBI	CTAG	2 cut(s)	111, 429
GluI	GCNGC	2 cut(s)	126, 172
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	2 cut(s)	22, 425
Hpy166II	GTNNAC	2 cut(s)	199, 474
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	352, 422
Hpy8I	GTNNAC	2 cut(s)	199, 474
HpyAV	CCTTC	2 cut(s)	152, 204
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	50, 128, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 134
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	507
KflI	GGGWCCC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	112, 158
LweI	GCATC	2 cut(s)	115, 400
MaeI	CTAG	2 cut(s)	111, 429
MaeII	ACGT	1 cut(s)	404
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	3 cut(s)	21, 27, 446
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	72, 321, 477
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	4 cut(s)	5, 108, 325, 434
MseI	TTAA	1 cut(s)	417
MspR9I	CCNGG	3 cut(s)	207, 231, 248
MvaI	CCWGG	3 cut(s)	207, 231, 248
MwoI	GCNNNNNNNGC	2 cut(s)	103, 134
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	4 cut(s)	116, 117, 215, 252
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	127, 173
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	3 cut(s)	205, 229, 246
PspGI	CCWGG	3 cut(s)	205, 229, 246
PspN4I	GGNNCC	4 cut(s)	116, 117, 215, 252
PspPI	GGNCC	2 cut(s)	115, 233
PspPPI	RGGWCCY	1 cut(s)	115
RsaI	GTAC	2 cut(s)	258, 403
RsaNI	GTAC	2 cut(s)	257, 402
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	126, 172
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	2 cut(s)	115, 233
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	207, 231, 248
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	157, 163, 173, 256, 394, 407, 454
SfaNI	GCATC	2 cut(s)	115, 400
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	72, 321, 477
SspMI	CTAG	2 cut(s)	111, 429
StyD4I	CCNGG	3 cut(s)	205, 229, 246
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	72, 321, 477
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	2 cut(s)	125, 171
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	2 cut(s)	111, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.