Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003829

Physical Location & Seq

Genomic Coordinates Reverse (-)

29778511 .. 29781724

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G318500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTTTGATTGAGGCTTTGCCTGAATTATCGGAAAGACCAGCAAATACAATGGAGTACACAGGTTTGATGGTGTTTCTATGTCCTATATGGATGGTCTTACTTCTTGGTGTTGTGATCGGATGGTCGTGGAAACCCAAGTGGGCACCTTTTGGGAACGGCAAGGACAAATTTGGCTGCTCTGTTTCTAAAGGCTTCGATTTTTCGTTGCCTTCTTCGCCGTCCCGGTCGTTAATGTCCCCATTAAAAGGCTTTTCATCGGCTCCGTGCTTGAATTCGTTTGAGTTGGCTTCCCAAGGTTGTGAAGCCTTGTTCATGGATAGGGAATTTGAGAGAACAACTTCTGCTTCACCTTCCGAATTTGATGAGGGCAGCACATCGCAGCTCAATGAAGAGAAATCTAATGCAGTGACAGAGGAGGACTTAGACCTTTTATGCACGCTTGTAGATATGAAAGATGGAGGTCCTACTTGGATACAGATGATGGAACGTTCCACTCCAACTATGAACTACCAAGGCTGGTGTAGGGATCCCGAGATTGGTCCTCCTCAATATCGTAGCAGAACTATCTATGAGGACGCAACACCTGAGATGGTAAGGGACTTTTTCTGGGATGATGAGTTTCGATTAAGGTGGGATGACATGCTTAGGCATTCGACAACGATAGAAGAGTGCCCTACCACGGGAACCATGGTGGTACAGTGGATACGGAAGTTCCCGTTGTTCTGTAAAGACAGAGAATACATAATAGGTCGTCGAATTTGGGAATCTGGAAGGTTGTATTATTGCGTGACAAAGGGAGTACCCTATGCCTCTATTCCGAGGAATGACAAGCCAAGACGCGTTGACTTGTACTACTCGAGTTGGTGCATTCAAGCAGTGGAATCAAGAAGAGCCAACGGCCAGCTGACGGCATGCGAGGTTCTACTCTTTCATCACGAAGATTTGGGTATTCCATGGGATATTGCAAAACTTGGAATACGAAAAGCAATCTGGGGGACCATCAAGAAGATCGAGGCTGGCTTACGTGCCTACCAAACAGAAAGAGCTTTAGGACTGCCACTTTCTCGGTCAGCCTTCATGGCTCATATCAACACCAAAATACATCCGGAGTACCTGAAAGCCTCAGGAGACACCGAGGATTCGTCACAGACTGAGGTGGTGACTGCATCTGGCAAAGCTGTGCGTAGGCACATATCGAAGCTCCTAATATTTGGTGGGACCATAATCCTTGCTTGCACTCTTAATCGAGGGCTCTTGATAAAGACATTGGTATTTGGGGTAACCAGAACGTTTGCAAAGGTAGGAAAGAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

440

Amino Acids

49.76

Weight (kDa)

7.48

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64720
fragaria_vesca	FvH4_5g10520 FvH4_5g10520 FvH4_7g32880
malus_domestica	MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1
prunus_persica	Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1
pyrus_communis	pycom06g11380 pycom07g27110 pycom14g11410
rosa_chinensis	RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601
rosa_laevigata	RLG00000004767 RLG00000026156
rosa_multiflora	Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016
rosa_roxburghii	Rroxscaffold_3G00267260 Rroxscaffold_4G00277860
rosa_rugosa	Rorug01G0436600 Rorug06G0482800
rosa_samantha	Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300
rosa_wichuraiana	Rw0G002630 Rw1G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	843
AccIII	TCCGGA	1 cut(s)	1108
AclI	AACGTT	2 cut(s)	490, 1292
AclWI	GGATC	2 cut(s)	524, 537
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	5 cut(s)	170, 274, 326, 359, 759
AfaI	GTAC	5 cut(s)	59, 699, 804, 854, 1115
AfiI	CCNNNNNNNGG	5 cut(s)	248, 539, 682, 683, 910
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	2 cut(s)	274, 875
AluBI	AGCT	5 cut(s)	385, 907, 1049, 1181, 1204
AluI	AGCT	5 cut(s)	385, 907, 1049, 1181, 1204
Alw26I	GTCTC	1 cut(s)	1125
AlwI	GGATC	2 cut(s)	524, 537
Ama87I	CYCGRG	2 cut(s)	533, 859
Aor13HI	TCCGGA	1 cut(s)	1108
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	3 cut(s)	177, 372, 382
ApoI	RAATTY	5 cut(s)	170, 274, 326, 359, 759
Asp700I	GAANNNNTTC	1 cut(s)	340
AspS9I	GGNCC	4 cut(s)	464, 542, 999, 1221
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	342, 1174
AvaI	CYCGRG	2 cut(s)	533, 859
AvaII	GGWCC	4 cut(s)	464, 542, 999, 1221
AxyI	CCTNAGG	1 cut(s)	1126
BaeGI	GKGCMC	2 cut(s)	148, 677
BaeI	ACNNNNGTAYC	2 cut(s)	698, 731
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	1257
BbvI	GCAGC	3 cut(s)	164, 384, 394
BccI	CCATC	7 cut(s)	64, 88, 117, 452, 478, 586, 1010
BceAI	ACGGC	4 cut(s)	175, 205, 916, 927
BciVI	GTATCC	2 cut(s)	468, 699
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	1125
BfuI	GTATCC	2 cut(s)	468, 699
BglI	GCCNNNNNGGC	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	178, 373, 383
BlsI	GCNGC	3 cut(s)	179, 374, 384
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	4 cut(s)	464, 542, 999, 1221
BmeT110I	CYCGRG	2 cut(s)	533, 859
BmgT120I	GGNCC	4 cut(s)	464, 542, 999, 1221
BmiI	GGNNCC	6 cut(s)	147, 264, 531, 688, 1000, 1222
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	1178
Bpu10I	CCTNAGC	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	1028
BsaJI	CCNNGG	7 cut(s)	295, 514, 681, 690, 821, 956, 1137
BsaWI	WCCGGW	1 cut(s)	1108
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 539, 682, 683, 910
Bse21I	CCTNAGG	1 cut(s)	1126
BseAI	TCCGGA	1 cut(s)	1108
BseDI	CCNNGG	7 cut(s)	295, 514, 681, 690, 821, 956, 1137
BseGI	GGATG	5 cut(s)	99, 128, 619, 643, 1105
BseLI	CCNNNNNNNGG	5 cut(s)	248, 539, 682, 683, 910
BseMII	CTCAG	3 cut(s)	579, 1140, 1146
BseRI	GAGGAG	2 cut(s)	431, 537
BseSI	GKGCMC	2 cut(s)	148, 677
BseXI	GCAGC	3 cut(s)	164, 384, 394
Bsh1236I	CGCG	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	903
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	230
BsiHKCI	CYCGRG	2 cut(s)	533, 859
BsiSI	CCGG	2 cut(s)	226, 1109
BslFI	GGGAC	5 cut(s)	208, 223, 614, 1012, 1234
BslI	CCNNNNNNNGG	5 cut(s)	248, 539, 682, 683, 910
BsmAI	GTCTC	1 cut(s)	1125
BsmFI	GGGAC	5 cut(s)	208, 223, 614, 1012, 1234
BsmI	GAATGC	2 cut(s)	652, 870
BsnI	GGCC	1 cut(s)	903
BsoBI	CYCGRG	2 cut(s)	533, 859
Bsp1286I	GDGCHC	3 cut(s)	148, 677, 1257
Bsp13I	TCCGGA	1 cut(s)	1108
Bsp143I	GATC	3 cut(s)	117, 529, 1011
Bsp19I	CCATGG	2 cut(s)	690, 956
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	3 cut(s)	580, 1139, 1147
BspEI	TCCGGA	1 cut(s)	1108
BspFNI	CGCG	1 cut(s)	843
BspLI	GGNNCC	6 cut(s)	147, 264, 531, 688, 1000, 1222
BspPI	GGATC	2 cut(s)	524, 537
BspQI	GCTCTTC	1 cut(s)	886
BspT107I	GGYRCC	1 cut(s)	145
BssECI	CCNNGG	7 cut(s)	295, 514, 681, 690, 821, 956, 1137
BssMI	GATC	3 cut(s)	117, 529, 1011
BssT1I	CCWWGG	4 cut(s)	295, 514, 690, 956
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	3 cut(s)	387, 663, 886
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	5 cut(s)	440, 905, 916, 1021, 1237
BstDEI	CTNAG	5 cut(s)	424, 588, 647, 1126, 1155
BstDSI	CCRYGG	3 cut(s)	681, 690, 956
BstEII	GGTNACC	1 cut(s)	1282
BstF5I	GGATG	5 cut(s)	99, 128, 619, 643, 1105
BstFNI	CGCG	1 cut(s)	843
BstKTI	GATC	3 cut(s)	120, 532, 1014
BstMAI	GTCTC	1 cut(s)	1125
BstMBI	GATC	3 cut(s)	117, 529, 1011
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 1082
BstNSI	RCATGY	2 cut(s)	646, 918
BstPI	GGTNACC	1 cut(s)	1282
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	2 cut(s)	148, 677
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	164, 384, 394
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu36I	CCTNAGG	1 cut(s)	1126
BsuI	GTATCC	2 cut(s)	468, 699
BsuRI	GGCC	1 cut(s)	903
BtgI	CCRYGG	3 cut(s)	681, 690, 956
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	99, 128, 619, 643, 1105
BtsI	GCAGTG	2 cut(s)	414, 885
BtsIMutI	CAGTG	3 cut(s)	414, 707, 885
Cac8I	GCNNGC	5 cut(s)	440, 905, 916, 1021, 1237
Cfr13I	GGNCC	4 cut(s)	464, 542, 999, 1221
CseI	GACGC	2 cut(s)	587, 849
Csp6I	GTAC	5 cut(s)	58, 698, 803, 853, 1114
CviAII	CATG	6 cut(s)	316, 643, 691, 915, 957, 1081
CviQI	GTAC	5 cut(s)	58, 698, 803, 853, 1114
DdeI	CTNAG	5 cut(s)	424, 588, 647, 1126, 1155
DpnI	GATC	3 cut(s)	119, 531, 1013
DpnII	GATC	3 cut(s)	117, 529, 1011
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	3 cut(s)	387, 663, 886
EarI	CTCTTC	3 cut(s)	387, 663, 886
Eco130I	CCWWGG	4 cut(s)	295, 514, 690, 956
Eco24I	GRGCYC	1 cut(s)	1257
Eco47I	GGWCC	4 cut(s)	464, 542, 999, 1221
Eco81I	CCTNAGG	1 cut(s)	1126
Eco88I	CYCGRG	2 cut(s)	533, 859
Eco91I	GGTNACC	1 cut(s)	1282
EcoO109I	RGGNCCY	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	1282
EcoRI	GAATTC	1 cut(s)	274
EcoT14I	CCWWGG	4 cut(s)	295, 514, 690, 956
EcoT38I	GRGCYC	1 cut(s)	1257
ErhI	CCWWGG	4 cut(s)	295, 514, 690, 956
FaeI	CATG	6 cut(s)	319, 646, 694, 918, 960, 1084
FaqI	GGGAC	5 cut(s)	208, 223, 614, 1012, 1234
FatI	CATG	6 cut(s)	315, 642, 690, 914, 956, 1080
Fnu4HI	GCNGC	3 cut(s)	178, 373, 383
FokI	GGATG	5 cut(s)	106, 135, 626, 650, 1092
FriOI	GRGCYC	1 cut(s)	1257
Fsp4HI	GCNGC	3 cut(s)	178, 373, 383
GluI	GCNGC	3 cut(s)	178, 373, 383
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	2 cut(s)	226, 1109
HgaI	GACGC	2 cut(s)	587, 849
Hin1II	CATG	6 cut(s)	319, 646, 694, 918, 960, 1084
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	3 cut(s)	767, 884, 1142
HpaII	CCGG	2 cut(s)	226, 1109
HphI	GGTGA	2 cut(s)	342, 1174
Hpy166II	GTNNAC	2 cut(s)	60, 847
Hpy188I	TCNGA	4 cut(s)	34, 122, 358, 822
Hpy188III	TCNNGA	8 cut(s)	533, 771, 888, 938, 1006, 1109, 1128, 1258
Hpy8I	GTNNAC	2 cut(s)	60, 847
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	4 cut(s)	222, 363, 768, 1087
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4IV	ACGT	3 cut(s)	490, 1027, 1292
HpyCH4V	TGCA	7 cut(s)	407, 438, 870, 968, 1169, 1239, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 1082
HpyF3I	CTNAG	5 cut(s)	424, 588, 647, 1126, 1155
HpySE526I	ACGT	3 cut(s)	490, 1027, 1292
Hsp92II	CATG	6 cut(s)	319, 646, 694, 918, 960, 1084
Kpn2I	TCCGGA	1 cut(s)	1108
Kzo9I	GATC	3 cut(s)	117, 529, 1011
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	2 cut(s)	268, 1209
Lsp1109I	GCAGC	3 cut(s)	164, 384, 394
LweI	GCATC	1 cut(s)	1178
MaeII	ACGT	3 cut(s)	490, 1027, 1292
MaeIII	GTNAC	5 cut(s)	409, 790, 1146, 1162, 1282
MalI	GATC	3 cut(s)	119, 531, 1013
MboI	GATC	3 cut(s)	117, 529, 1011
MboII	GAAGA	6 cut(s)	207, 404, 680, 903, 953, 1021
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	148, 677, 1257
MluCI	AATT	7 cut(s)	26, 170, 274, 326, 359, 759, 1313
MluI	ACGCGT	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	524
MroI	TCCGGA	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	4 cut(s)	233, 245, 629, 1245
MspA1I	CMGCKG	1 cut(s)	907
MspI	CCGG	2 cut(s)	226, 1109
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	2 cut(s)	652, 870
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	2 cut(s)	217, 1082
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	2 cut(s)	690, 956
NdeII	GATC	3 cut(s)	117, 529, 1011
NlaIII	CATG	6 cut(s)	319, 646, 694, 918, 960, 1084
NlaIV	GGNNCC	6 cut(s)	147, 264, 531, 688, 1000, 1222
NmuCI	GTSAC	4 cut(s)	409, 790, 1146, 1162
NspI	RCATGY	2 cut(s)	646, 918
PaeI	GCATGC	1 cut(s)	918
PaeR7I	CTCGAG	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	886
PctI	GAATGC	2 cut(s)	652, 870
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	3 cut(s)	767, 884, 1142
PkrI	GCNGC	3 cut(s)	179, 374, 384
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	464
Psp1406I	AACGTT	2 cut(s)	490, 1292
Psp5II	RGGWCCY	1 cut(s)	464
PspEI	GGTNACC	1 cut(s)	1282
PspN4I	GGNNCC	6 cut(s)	147, 264, 531, 688, 1000, 1222
PspPI	GGNCC	4 cut(s)	464, 542, 999, 1221
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	907
RsaI	GTAC	5 cut(s)	59, 699, 804, 854, 1115
RsaNI	GTAC	5 cut(s)	58, 698, 803, 853, 1114
SapI	GCTCTTC	1 cut(s)	886
SaqAI	TTAA	4 cut(s)	233, 245, 629, 1245
SatI	GCNGC	3 cut(s)	178, 373, 383
Sau3AI	GATC	3 cut(s)	117, 529, 1011
Sau96I	GGNCC	4 cut(s)	464, 542, 999, 1221
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	3 cut(s)	148, 677, 1257
SfaNI	GCATC	1 cut(s)	1178
Sfr274I	CTCGAG	1 cut(s)	859
SinI	GGWCC	4 cut(s)	464, 542, 999, 1221
SlaI	CTCGAG	1 cut(s)	859
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	7 cut(s)	26, 170, 274, 326, 359, 759, 1313
SspI	AATATT	1 cut(s)	1212
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	4 cut(s)	295, 514, 690, 956
TaaI	ACNGT	1 cut(s)	702
TaiI	ACGT	3 cut(s)	493, 1030, 1295
TaqI	TCGA	8 cut(s)	198, 625, 656, 757, 860, 1014, 1199, 1249
TaqII	GACCGA	1 cut(s)	1059
TasI	AATT	7 cut(s)	26, 170, 274, 326, 359, 759, 1313
TatI	WGTACW	2 cut(s)	57, 852
TfiI	GAWTC	3 cut(s)	767, 884, 1142
Tru1I	TTAA	4 cut(s)	233, 245, 629, 1245
Tru9I	TTAA	4 cut(s)	233, 245, 629, 1245
TscAI	CASTG	3 cut(s)	414, 707, 885
TseFI	GTSAC	4 cut(s)	409, 790, 1146, 1162
TseI	GCWGC	3 cut(s)	177, 372, 382
Tsp45I	GTSAC	4 cut(s)	409, 790, 1146, 1162
TspDTI	ATGAA	7 cut(s)	246, 304, 405, 467, 521, 923, 1069
TspGWI	ACGGA	2 cut(s)	255, 724
TspRI	CASTG	3 cut(s)	414, 707, 885
VpaK11BI	GGWCC	4 cut(s)	464, 542, 999, 1221
XapI	RAATTY	5 cut(s)	170, 274, 326, 359, 759
XceI	RCATGY	2 cut(s)	646, 918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	859
XmnI	GAANNNNTTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.