Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003829

Physical Location & Seq

Genomic Coordinates Reverse (-)

26909158 .. 26911167

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGGTCGCAGGTTTGGATTTGATGGTGCTTCTGGGTATTTCGATGGCATTTTTTATTGGAGTTTTGATCGGATGGTCGTGGAAACCAAAGTGGGCATTCTCTGGCAATGACAAGGACAAACTAGGCTGCCCTGTGCCTAAAGCTTTTGATTTTTCGCAGCCTTCTTCGCCGCCCCGGTCCCCTTTAAAGGGGTTTTCGTCAGCTCCATGCTTGAATTGTTTTGAGTCATTGGTTTCCCAAGGTTGTGAAGCTTGCTGCATGGGTAAGGGAATTCAGAAAACTACTTCTGTATCGCCTCCGGCTACCGAATTCGATGAGGGCAGCAGCACATCGCAGCTGAATGACGAGAAGCCGAAAGTAGTGACTGAGGAGGATTTAGAGGTTTTATCCGAGCTTGTAGATATGAAAGATGGAGGTCCTCCATGGATACAGATGATGGATCGCTCCACCCCAACTATGACCTACCAAGGCTGGCGTAGGGATCCAAAGGTCGGTCCTCCTCAATATCGTAGCAGAACTGTCTATGAGGATGCAACGCCGGAATTAGTGAGGGACTTCTTCTGGGATGACGAGTTTCGACTAAGGTGGGATGACATGCTTAGTTATGCGAAAACCATAGAAGAATGCCCGACCACAGGAACCATGGTGACGCAGTGGATTAAGAAGTTCCCGTTTTTCTGTAAAGACAGAGAATACATCATAGGTCGTCGAATTTGGGAATCTGGGAGGTTGTATTATTGCGTGACAAAGGGAGTGCCCTATGCTTCTGTTCCAAGACATGACAAGCAAGTACGCGTAGATCTGTACTTCTCAAGTTGGTGCATTCAAGCAGTGGAATCAAGAAGGGCTGACGGCCAGCTGACTGCGTGTGAGGTTATATTCTTACATTACGAAGATATGGGACTCCCATGGGAAATTGTAAAACTTGGATTACGAAAAGGGATGTGGGATACAGTCAAGAAGATTGAGGCTGGCTTACGCGCCTACCAGAAGGAAAGAGCAGCAGGATCACCACTTTCCCGGCCAGCCTTTATGGCTCAGATCAACACGAAAATACATCCCGGGTACCTGAAATCCTCAGGAGCCACAGAAGACTCATCACAAACTGAGGTCGTGATTGCATCCAAGAAGCCTGCGGGTAGGCACATACCCAAGCTCTTAATACTTGTGGGGACAATAATCATTGCTTGCACTCTTACTAGGGGACACCTAGGCAGAAAGCTTGCGAAGGTAGGAAAGAAATTGCAAACAAAGAGTGATCGAGATTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

426

Amino Acids

47.8

Weight (kDa)

8.69

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64720
fragaria_vesca	FvH4_5g10520 FvH4_5g10520 FvH4_7g32880
malus_domestica	MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1
prunus_persica	Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1
pyrus_communis	pycom06g11380 pycom07g27110 pycom14g11410
rosa_chinensis	RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601
rosa_laevigata	RLG00000004767 RLG00000026156
rosa_multiflora	Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016
rosa_roxburghii	Rroxscaffold_3G00267260 Rroxscaffold_4G00277860
rosa_rugosa	Rorug01G0436600 Rorug06G0482800
rosa_samantha	Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300
rosa_wichuraiana	Rw0G002630 Rw1G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
Acc65I	GGTACC	1 cut(s)	1068
AccB1I	GGYRCC	1 cut(s)	1068
AccII	CGCG	2 cut(s)	798, 984
AciI	CCGC	2 cut(s)	173, 1139
AclWI	GGATC	4 cut(s)	450, 479, 492, 1018
AcoI	YGGCCR	2 cut(s)	856, 1025
AcsI	RAATTY	3 cut(s)	273, 311, 714
AfaI	GTAC	3 cut(s)	795, 809, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	190, 191, 494, 638
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	217, 830, 1272
AluBI	AGCT	8 cut(s)	146, 206, 254, 340, 397, 862, 1159, 1225
AluI	AGCT	8 cut(s)	146, 206, 254, 340, 397, 862, 1159, 1225
AlwI	GGATC	4 cut(s)	450, 479, 492, 1018
Ama87I	CYCGRG	1 cut(s)	1064
AoxI	GGCC	2 cut(s)	856, 1025
ApeKI	GCWGC	7 cut(s)	129, 160, 258, 324, 327, 337, 1004
ApoI	RAATTY	3 cut(s)	273, 311, 714
Asp718I	GGTACC	1 cut(s)	1068
AspA2I	CCTAGG	1 cut(s)	1213
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	3 cut(s)	180, 419, 497
AsuC2I	CCSGG	4 cut(s)	178, 1024, 1065, 1066
AsuHPI	GGTGA	2 cut(s)	661, 1005
AvaI	CYCGRG	1 cut(s)	1064
AvaII	GGWCC	3 cut(s)	180, 419, 497
AvrII	CCTAGG	1 cut(s)	1213
AxyI	CCTNAGG	1 cut(s)	1081
BaeGI	GKGCMC	1 cut(s)	762
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BamHI	GGATCC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	1101
BbvI	GCAGC	7 cut(s)	116, 172, 245, 336, 339, 349, 1016
BccI	CCATC	5 cut(s)	19, 40, 69, 407, 433
BceAI	ACGGC	1 cut(s)	871
BciVI	GTATCC	2 cut(s)	423, 946
BcnI	CCSGG	4 cut(s)	178, 1024, 1065, 1066
BfaI	CTAG	3 cut(s)	125, 1203, 1214
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	2 cut(s)	423, 946
BglI	GCCNNNNNGGC	1 cut(s)	1037
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	8 cut(s)	130, 161, 173, 259, 325, 328, 338, 1005
BlnI	CCTAGG	1 cut(s)	1213
BlsI	GCNGC	8 cut(s)	131, 162, 174, 260, 326, 329, 339, 1006
Bme1390I	CCNGG	4 cut(s)	178, 1024, 1065, 1066
Bme18I	GGWCC	3 cut(s)	180, 419, 497
BmeT110I	CYCGRG	1 cut(s)	1064
BmgT120I	GGNCC	3 cut(s)	180, 419, 497
BmiI	GGNNCC	5 cut(s)	182, 486, 643, 1070, 1087
BmrFI	CCNGG	4 cut(s)	178, 1024, 1065, 1066
BmsI	GCATC	2 cut(s)	523, 1133
BpiI	GAAGAC	1 cut(s)	1101
BpuEI	CTTGAG	1 cut(s)	799
BpuMI	CCSGG	4 cut(s)	178, 1024, 1065, 1066
BsaJI	CCNNGG	8 cut(s)	176, 241, 425, 469, 645, 911, 1064, 1213
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 191, 494, 638
Bse21I	CCTNAGG	1 cut(s)	1081
Bse3DI	GCAATG	2 cut(s)	115, 1185
BseDI	CCNNGG	8 cut(s)	176, 241, 425, 469, 645, 911, 1064, 1213
BseGI	GGATG	7 cut(s)	80, 538, 574, 598, 951, 1060, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	190, 191, 494, 638
BseMI	GCAATG	2 cut(s)	115, 1185
BseMII	CTCAG	4 cut(s)	360, 1055, 1095, 1101
BseRI	GAGGAG	2 cut(s)	386, 492
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	7 cut(s)	116, 172, 245, 336, 339, 349, 1016
Bsh1236I	CGCG	2 cut(s)	798, 984
BshFI	GGCC	2 cut(s)	858, 1027
BshNI	GGYRCC	1 cut(s)	1068
BsiHKCI	CYCGRG	1 cut(s)	1064
BsiSI	CCGG	5 cut(s)	178, 302, 542, 1024, 1065
BslFI	GGGAC	5 cut(s)	166, 569, 918, 1189, 1221
BslI	CCNNNNNNNGG	4 cut(s)	190, 191, 494, 638
BsmFI	GGGAC	5 cut(s)	166, 569, 918, 1189, 1221
BsmI	GAATGC	3 cut(s)	98, 632, 825
BsnI	GGCC	2 cut(s)	858, 1027
BsoBI	CYCGRG	1 cut(s)	1064
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
Bsp19I	CCATGG	3 cut(s)	425, 645, 911
BspACI	CCGC	2 cut(s)	173, 1139
BspANI	GGCC	2 cut(s)	858, 1027
BspCNI	CTCAG	4 cut(s)	361, 1054, 1094, 1102
BspFNI	CGCG	2 cut(s)	798, 984
BspLI	GGNNCC	5 cut(s)	182, 486, 643, 1070, 1087
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	4 cut(s)	450, 479, 492, 1018
BspT107I	GGYRCC	1 cut(s)	1068
BsrDI	GCAATG	2 cut(s)	115, 1185
BssECI	CCNNGG	8 cut(s)	176, 241, 425, 469, 645, 911, 1064, 1213
BssMI	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
BssT1I	CCWWGG	6 cut(s)	241, 425, 469, 645, 911, 1213
Bst4CI	ACNGT	2 cut(s)	523, 958
BstC8I	GCNNGC	8 cut(s)	256, 476, 860, 976, 1029, 1137, 1192, 1227
BstDEI	CTNAG	6 cut(s)	369, 584, 602, 1041, 1081, 1110
BstDSI	CCRYGG	3 cut(s)	425, 645, 911
BstF5I	GGATG	7 cut(s)	80, 538, 574, 598, 951, 1060, 1124
BstFNI	CGCG	2 cut(s)	798, 984
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	7 cut(s)	72, 445, 487, 805, 1013, 1047, 1264
BstMBI	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 1037
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	4 cut(s)	176, 1022, 1063, 1064
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	2 cut(s)	798, 984
BstV1I	GCAGC	7 cut(s)	116, 172, 245, 336, 339, 349, 1016
BstV2I	GAAGAC	1 cut(s)	1101
BstX2I	RGATCY	2 cut(s)	484, 802
BstYI	RGATCY	2 cut(s)	484, 802
Bsu36I	CCTNAGG	1 cut(s)	1081
BsuI	GTATCC	2 cut(s)	423, 946
BsuRI	GGCC	2 cut(s)	858, 1027
BtgI	CCRYGG	3 cut(s)	425, 645, 911
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	7 cut(s)	80, 538, 574, 598, 951, 1060, 1124
BtsI	GCAGTG	2 cut(s)	662, 840
BtsIMutI	CAGTG	2 cut(s)	662, 840
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	8 cut(s)	256, 476, 860, 976, 1029, 1137, 1192, 1227
CfoI	GCGC	1 cut(s)	986
Cfr13I	GGNCC	3 cut(s)	180, 419, 497
Cfr9I	CCCGGG	1 cut(s)	1064
CseI	GACGC	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	794, 808, 1069
CviAII	CATG	7 cut(s)	210, 262, 426, 598, 646, 782, 912
CviQI	GTAC	3 cut(s)	794, 808, 1069
DdeI	CTNAG	6 cut(s)	369, 584, 602, 1041, 1081, 1110
DpnI	GATC	7 cut(s)	71, 444, 486, 804, 1012, 1046, 1263
DpnII	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	856, 1025
Eco130I	CCWWGG	6 cut(s)	241, 425, 469, 645, 911, 1213
Eco47I	GGWCC	3 cut(s)	180, 419, 497
Eco81I	CCTNAGG	1 cut(s)	1081
Eco88I	CYCGRG	1 cut(s)	1064
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	2 cut(s)	273, 311
EcoT14I	CCWWGG	6 cut(s)	241, 425, 469, 645, 911, 1213
ErhI	CCWWGG	6 cut(s)	241, 425, 469, 645, 911, 1213
FaeI	CATG	7 cut(s)	213, 265, 429, 601, 649, 785, 915
FaqI	GGGAC	5 cut(s)	166, 569, 918, 1189, 1221
FatI	CATG	7 cut(s)	209, 261, 425, 597, 645, 781, 911
FauI	CCCGC	1 cut(s)	1132
Fnu4HI	GCNGC	8 cut(s)	130, 161, 173, 259, 325, 328, 338, 1005
FokI	GGATG	7 cut(s)	87, 545, 581, 605, 958, 1047, 1111
Fsp4HI	GCNGC	8 cut(s)	130, 161, 173, 259, 325, 328, 338, 1005
FspBI	CTAG	3 cut(s)	125, 1203, 1214
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	8 cut(s)	130, 161, 173, 259, 325, 328, 338, 1005
HaeIII	GGCC	2 cut(s)	858, 1027
HapII	CCGG	5 cut(s)	178, 302, 542, 1024, 1065
HgaI	GACGC	1 cut(s)	661
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	7 cut(s)	213, 265, 429, 601, 649, 785, 915
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HindIII	AAGCTT	3 cut(s)	144, 252, 1223
HinfI	GANTC	6 cut(s)	227, 722, 839, 906, 1097, 1268
HpaII	CCGG	5 cut(s)	178, 302, 542, 1024, 1065
HphI	GGTGA	2 cut(s)	661, 1005
Hpy188I	TCNGA	4 cut(s)	74, 279, 394, 1044
Hpy188III	TCNNGA	5 cut(s)	843, 961, 1083, 1117, 1265
Hpy99I	CGWCG	1 cut(s)	714
HpyAV	CCTTC	4 cut(s)	174, 840, 988, 1225
HpyCH4III	ACNGT	2 cut(s)	523, 958
HpyCH4V	TGCA	6 cut(s)	261, 536, 825, 1124, 1194, 1249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 1037
HpyF3I	CTNAG	6 cut(s)	369, 584, 602, 1041, 1081, 1110
Hsp92II	CATG	7 cut(s)	213, 265, 429, 601, 649, 785, 915
HspAI	GCGC	1 cut(s)	984
KpnI	GGTACC	1 cut(s)	1072
Kzo9I	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
LmnI	GCTCC	3 cut(s)	211, 452, 1085
Lsp1109I	GCAGC	7 cut(s)	116, 172, 245, 336, 339, 349, 1016
LweI	GCATC	2 cut(s)	523, 1133
MaeI	CTAG	3 cut(s)	125, 1203, 1214
MaeIII	GTNAC	3 cut(s)	364, 649, 745
MalI	GATC	7 cut(s)	71, 444, 486, 804, 1012, 1046, 1263
MboI	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
MboII	GAAGA	6 cut(s)	159, 553, 635, 908, 976, 1106
MflI	RGATCY	2 cut(s)	484, 802
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	7 cut(s)	217, 273, 311, 545, 714, 918, 1244
MluI	ACGCGT	1 cut(s)	796
MlyI	GAGTC	3 cut(s)	236, 900, 1091
MseI	TTAA	3 cut(s)	188, 663, 1163
MspA1I	CMGCKG	2 cut(s)	340, 862
MspI	CCGG	5 cut(s)	178, 302, 542, 1024, 1065
MspR9I	CCNGG	4 cut(s)	178, 1024, 1065, 1066
Mva1269I	GAATGC	3 cut(s)	98, 632, 825
MvnI	CGCG	2 cut(s)	798, 984
MwoI	GCNNNNNNNGC	2 cut(s)	169, 1037
NciI	CCSGG	4 cut(s)	178, 1024, 1065, 1066
NcoI	CCATGG	3 cut(s)	425, 645, 911
NdeII	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
NlaIII	CATG	7 cut(s)	213, 265, 429, 601, 649, 785, 915
NlaIV	GGNNCC	5 cut(s)	182, 486, 643, 1070, 1087
NmuCI	GTSAC	3 cut(s)	364, 649, 745
NspI	RCATGY	1 cut(s)	601
PctI	GAATGC	3 cut(s)	98, 632, 825
PfeI	GAWTC	3 cut(s)	722, 839, 1268
PkrI	GCNGC	8 cut(s)	131, 162, 174, 260, 326, 329, 339, 1006
PleI	GAGTC	3 cut(s)	235, 900, 1091
PpsI	GAGTC	3 cut(s)	235, 900, 1091
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
PspN4I	GGNNCC	5 cut(s)	182, 486, 643, 1070, 1087
PspPI	GGNCC	3 cut(s)	180, 419, 497
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	484, 802
PvuII	CAGCTG	2 cut(s)	340, 862
RsaI	GTAC	3 cut(s)	795, 809, 1070
RsaNI	GTAC	3 cut(s)	794, 808, 1069
SaqAI	TTAA	3 cut(s)	188, 663, 1163
SatI	GCNGC	8 cut(s)	130, 161, 173, 259, 325, 328, 338, 1005
Sau3AI	GATC	7 cut(s)	69, 442, 484, 802, 1010, 1044, 1261
Sau96I	GGNCC	3 cut(s)	180, 419, 497
SchI	GAGTC	3 cut(s)	236, 900, 1091
ScrFI	CCNGG	4 cut(s)	178, 1024, 1065, 1066
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	2 cut(s)	523, 1133
SinI	GGWCC	3 cut(s)	180, 419, 497
SmaI	CCCGGG	1 cut(s)	1066
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
Sse9I	AATT	7 cut(s)	217, 273, 311, 545, 714, 918, 1244
SsiI	CCGC	2 cut(s)	173, 1139
SspMI	CTAG	3 cut(s)	125, 1203, 1214
StyD4I	CCNGG	4 cut(s)	176, 1022, 1063, 1064
StyI	CCWWGG	6 cut(s)	241, 425, 469, 645, 911, 1213
TaaI	ACNGT	2 cut(s)	523, 958
TaqI	TCGA	5 cut(s)	44, 315, 580, 712, 1264
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	7 cut(s)	217, 273, 311, 545, 714, 918, 1244
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	3 cut(s)	722, 839, 1268
Tru1I	TTAA	3 cut(s)	188, 663, 1163
Tru9I	TTAA	3 cut(s)	188, 663, 1163
TscAI	CASTG	2 cut(s)	662, 840
TseFI	GTSAC	3 cut(s)	364, 649, 745
TseI	GCWGC	7 cut(s)	129, 160, 258, 324, 327, 337, 1004
Tsp45I	GTSAC	3 cut(s)	364, 649, 745
TspDTI	ATGAA	1 cut(s)	422
TspMI	CCCGGG	1 cut(s)	1064
TspRI	CASTG	2 cut(s)	662, 840
VpaK11BI	GGWCC	3 cut(s)	180, 419, 497
XapI	RAATTY	3 cut(s)	273, 311, 714
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmaI	CCCGGG	1 cut(s)	1064
XmaJI	CCTAGG	1 cut(s)	1213
XspI	CTAG	3 cut(s)	125, 1203, 1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.