START domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64720 |
| fragaria_vesca | FvH4_5g10520 FvH4_5g10520 FvH4_7g32880 |
| malus_domestica | MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1 |
| prunus_persica | Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1 |
| pyrus_communis | pycom06g11380 pycom07g27110 pycom14g11410 |
| rosa_chinensis | RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601 |
| rosa_laevigata | RLG00000004767 RLG00000026156 |
| rosa_multiflora | Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016 |
| rosa_roxburghii | Rroxscaffold_3G00267260 Rroxscaffold_4G00277860 |
| rosa_rugosa | Rorug01G0436600 Rorug06G0482800 |
| rosa_samantha | Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300 |
| rosa_wichuraiana | Rw0G002630 Rw1G041020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 701 |
| AccI | GTMKAC | 1 cut(s) | 485 |
| AciI | CCGC | 2 cut(s) | 539, 547 |
| AclWI | GGATC | 1 cut(s) | 486 |
| AcoI | YGGCCR | 2 cut(s) | 157, 892 |
| AcsI | RAATTY | 2 cut(s) | 27, 912 |
| AcuI | CTGAAG | 1 cut(s) | 1065 |
| AcvI | CACGTG | 1 cut(s) | 237 |
| AcyI | GRCGYC | 1 cut(s) | 11 |
| AdeI | CACNNNGTG | 2 cut(s) | 697, 1064 |
| AfaI | GTAC | 6 cut(s) | 556, 574, 642, 795, 810, 845 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 90, 312, 530, 674 |
| AflIII | ACRYGT | 2 cut(s) | 236, 832 |
| AgsI | TTSAA | 6 cut(s) | 271, 380, 852, 875, 1121, 1151 |
| AjiI | CACGTC | 1 cut(s) | 833 |
| AjnI | CCWGG | 1 cut(s) | 1009 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 344, 376 |
| AleI | CACNNNNGTG | 1 cut(s) | 47 |
| AluBI | AGCT | 9 cut(s) | 166, 264, 280, 366, 433, 509, 898, 992, 1207 |
| AluI | AGCT | 9 cut(s) | 166, 264, 280, 366, 433, 509, 898, 992, 1207 |
| Alw21I | GWGCWC | 3 cut(s) | 60, 266, 693 |
| Alw26I | GTCTC | 2 cut(s) | 513, 521 |
| Alw44I | GTGCAC | 1 cut(s) | 689 |
| AlwI | GGATC | 1 cut(s) | 486 |
| Ama87I | CYCGRG | 1 cut(s) | 524 |
| AoxI | GGCC | 4 cut(s) | 157, 299, 455, 892 |
| ApaLI | GTGCAC | 1 cut(s) | 689 |
| ApeKI | GCWGC | 1 cut(s) | 280 |
| ApoI | RAATTY | 2 cut(s) | 27, 912 |
| AspLEI | GCGC | 3 cut(s) | 331, 501, 702 |
| AspS9I | GGNCC | 2 cut(s) | 455, 533 |
| AsuC2I | CCSGG | 1 cut(s) | 255 |
| AvaI | CYCGRG | 1 cut(s) | 524 |
| AvaII | GGWCC | 1 cut(s) | 533 |
| BaeGI | GKGCMC | 1 cut(s) | 693 |
| BalI | TGGCCA | 1 cut(s) | 894 |
| BanII | GRGCYC | 2 cut(s) | 266, 1260 |
| BbrPI | CACGTG | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 3 cut(s) | 60, 266, 693 |
| BbvI | GCAGC | 1 cut(s) | 267 |
| BccI | CCATC | 3 cut(s) | 443, 469, 884 |
| BceAI | ACGGC | 2 cut(s) | 83, 434 |
| BciT130I | CCWGG | 1 cut(s) | 1011 |
| BciVI | GTATCC | 1 cut(s) | 953 |
| BcnI | CCSGG | 1 cut(s) | 255 |
| BcoDI | GTCTC | 2 cut(s) | 513, 521 |
| BfaI | CTAG | 2 cut(s) | 828, 1211 |
| BfmI | CTRYAG | 1 cut(s) | 1240 |
| BfoI | RGCGCY | 1 cut(s) | 332 |
| BfuI | GTATCC | 1 cut(s) | 953 |
| BglII | AGATCT | 1 cut(s) | 1112 |
| BisI | GCNGC | 1 cut(s) | 281 |
| BlpI | GCTNAGC | 1 cut(s) | 260 |
| BlsI | GCNGC | 1 cut(s) | 282 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 2 cut(s) | 255, 1011 |
| Bme18I | GGWCC | 1 cut(s) | 533 |
| BmeT110I | CYCGRG | 1 cut(s) | 524 |
| BmgBI | CACGTC | 1 cut(s) | 833 |
| BmgT120I | GGNCC | 2 cut(s) | 455, 533 |
| BmiI | GGNNCC | 1 cut(s) | 679 |
| BmrFI | CCNGG | 2 cut(s) | 255, 1011 |
| BmrI | ACTGGG | 2 cut(s) | 279, 703 |
| BmsI | GCATC | 2 cut(s) | 63, 656 |
| BmuI | ACTGGG | 2 cut(s) | 279, 703 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1025, 1057 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1203 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 260 |
| BpuEI | CTTGAG | 1 cut(s) | 1129 |
| BpuMI | CCSGG | 1 cut(s) | 255 |
| BsaAI | YACGTR | 1 cut(s) | 237 |
| BsaBI | GATNNNNATC | 1 cut(s) | 315 |
| BsaHI | GRCGYC | 1 cut(s) | 11 |
| BsaI | GGTCTC | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 7 cut(s) | 99, 254, 296, 812, 947, 1140, 1252 |
| BsaWI | WCCGGW | 2 cut(s) | 392, 674 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 520, 550 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 90, 312, 530, 674 |
| Bse1I | ACTGG | 3 cut(s) | 285, 535, 698 |
| Bse8I | GATNNNNATC | 1 cut(s) | 315 |
| BseBI | CCWGG | 1 cut(s) | 1011 |
| BseDI | CCNNGG | 7 cut(s) | 99, 254, 296, 812, 947, 1140, 1252 |
| BseGI | GGATG | 3 cut(s) | 610, 634, 895 |
| BseJI | GATNNNNATC | 1 cut(s) | 315 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 90, 312, 530, 674 |
| BseMII | CTCAG | 4 cut(s) | 251, 570, 578, 1091 |
| BseNI | ACTGG | 3 cut(s) | 285, 535, 698 |
| BseRI | GAGGAG | 4 cut(s) | 193, 358, 455, 790 |
| BseSI | GKGCMC | 1 cut(s) | 693 |
| BseXI | GCAGC | 1 cut(s) | 267 |
| BsgI | GTGCAG | 1 cut(s) | 1119 |
| BshFI | GGCC | 4 cut(s) | 159, 301, 457, 894 |
| BsiHKAI | GWGCWC | 3 cut(s) | 60, 266, 693 |
| BsiHKCI | CYCGRG | 1 cut(s) | 524 |
| BsiSI | CCGG | 4 cut(s) | 254, 393, 675, 973 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 90, 312, 530, 674 |
| BsmAI | GTCTC | 2 cut(s) | 513, 521 |
| BsmI | GAATGC | 2 cut(s) | 291, 861 |
| BsnI | GGCC | 4 cut(s) | 159, 301, 457, 894 |
| Bso31I | GGTCTC | 1 cut(s) | 513 |
| BsoBI | CYCGRG | 1 cut(s) | 524 |
| Bsp1286I | GDGCHC | 4 cut(s) | 60, 266, 693, 1260 |
| Bsp1407I | TGTACA | 2 cut(s) | 572, 640 |
| Bsp143I | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 260 |
| Bsp19I | CCATGG | 2 cut(s) | 296, 1140 |
| BspACI | CCGC | 2 cut(s) | 539, 547 |
| BspANI | GGCC | 4 cut(s) | 159, 301, 457, 894 |
| BspCNI | CTCAG | 4 cut(s) | 252, 571, 579, 1090 |
| BspLI | GGNNCC | 1 cut(s) | 679 |
| BspPI | GGATC | 1 cut(s) | 486 |
| BspQI | GCTCTTC | 1 cut(s) | 1187 |
| BspTNI | GGTCTC | 1 cut(s) | 513 |
| BsrGI | TGTACA | 2 cut(s) | 572, 640 |
| BsrI | ACTGG | 3 cut(s) | 285, 535, 698 |
| BssECI | CCNNGG | 7 cut(s) | 99, 254, 296, 812, 947, 1140, 1252 |
| BssMI | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| BssNI | GRCGYC | 1 cut(s) | 11 |
| BssT1I | CCWWGG | 4 cut(s) | 296, 812, 947, 1140 |
| Bst2UI | CCWGG | 1 cut(s) | 1011 |
| Bst4CI | ACNGT | 3 cut(s) | 572, 779, 1062 |
| Bst6I | CTCTTC | 3 cut(s) | 211, 511, 1187 |
| BstACI | GRCGYC | 1 cut(s) | 11 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 697 |
| BstAUI | TGTACA | 2 cut(s) | 572, 640 |
| BstBAI | YACGTR | 1 cut(s) | 237 |
| BstC8I | GCNNGC | 6 cut(s) | 303, 431, 459, 896, 1016, 1020 |
| BstDEI | CTNAG | 6 cut(s) | 32, 260, 579, 587, 1077, 1203 |
| BstDSI | CCRYGG | 3 cut(s) | 99, 296, 1140 |
| BstF5I | GGATG | 3 cut(s) | 610, 634, 895 |
| BstH2I | RGCGCY | 1 cut(s) | 332 |
| BstHHI | GCGC | 3 cut(s) | 331, 501, 702 |
| BstKTI | GATC | 4 cut(s) | 481, 1005, 1083, 1115 |
| BstMAI | GTCTC | 2 cut(s) | 513, 521 |
| BstMBI | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 337, 697, 1046, 1073 |
| BstNI | CCWGG | 1 cut(s) | 1011 |
| BstNSI | RCATGY | 3 cut(s) | 637, 647, 909 |
| BstSCI | CCNGG | 2 cut(s) | 253, 1009 |
| BstSFI | CTRYAG | 1 cut(s) | 1240 |
| BstSLI | GKGCMC | 1 cut(s) | 693 |
| BstV1I | GCAGC | 1 cut(s) | 267 |
| BstX2I | RGATCY | 1 cut(s) | 1112 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 49 |
| BstYI | RGATCY | 1 cut(s) | 1112 |
| BsuI | GTATCC | 1 cut(s) | 953 |
| BsuRI | GGCC | 4 cut(s) | 159, 301, 457, 894 |
| BtgI | CCRYGG | 3 cut(s) | 99, 296, 1140 |
| BtrI | CACGTC | 1 cut(s) | 833 |
| BtsCI | GGATG | 3 cut(s) | 610, 634, 895 |
| BtsIMutI | CAGTG | 2 cut(s) | 691, 1102 |
| Cac8I | GCNNGC | 6 cut(s) | 303, 431, 459, 896, 1016, 1020 |
| CfoI | GCGC | 3 cut(s) | 331, 501, 702 |
| Cfr13I | GGNCC | 2 cut(s) | 455, 533 |
| Csp6I | GTAC | 6 cut(s) | 555, 573, 641, 794, 809, 844 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 965, 1000 |
| CviAII | CATG | 8 cut(s) | 297, 398, 634, 644, 682, 906, 1072, 1141 |
| CviQI | GTAC | 6 cut(s) | 555, 573, 641, 794, 809, 844 |
| DdeI | CTNAG | 6 cut(s) | 32, 260, 579, 587, 1077, 1203 |
| DpnI | GATC | 4 cut(s) | 480, 1004, 1082, 1114 |
| DpnII | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| DraIII | CACNNNGTG | 2 cut(s) | 697, 1064 |
| EaeI | YGGCCR | 2 cut(s) | 157, 892 |
| Eam1104I | CTCTTC | 3 cut(s) | 211, 511, 1187 |
| EarI | CTCTTC | 3 cut(s) | 211, 511, 1187 |
| Ecl136II | GAGCTC | 1 cut(s) | 264 |
| Eco130I | CCWWGG | 4 cut(s) | 296, 812, 947, 1140 |
| Eco24I | GRGCYC | 2 cut(s) | 266, 1260 |
| Eco31I | GGTCTC | 1 cut(s) | 513 |
| Eco47I | GGWCC | 1 cut(s) | 533 |
| Eco53kI | GAGCTC | 1 cut(s) | 264 |
| Eco57I | CTGAAG | 1 cut(s) | 1065 |
| Eco72I | CACGTG | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 524 |
| EcoICRI | GAGCTC | 1 cut(s) | 264 |
| EcoO109I | RGGNCCY | 1 cut(s) | 455 |
| EcoRII | CCWGG | 1 cut(s) | 1009 |
| EcoT14I | CCWWGG | 4 cut(s) | 296, 812, 947, 1140 |
| EcoT22I | ATGCAT | 1 cut(s) | 649 |
| EcoT38I | GRGCYC | 2 cut(s) | 266, 1260 |
| ErhI | CCWWGG | 4 cut(s) | 296, 812, 947, 1140 |
| FaeI | CATG | 8 cut(s) | 300, 401, 637, 647, 685, 909, 1075, 1144 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 315, 347, 1038, 1070 |
| FatI | CATG | 8 cut(s) | 296, 397, 633, 643, 681, 905, 1071, 1140 |
| FauNDI | CATATG | 2 cut(s) | 425, 471 |
| FblI | GTMKAC | 1 cut(s) | 485 |
| Fnu4HI | GCNGC | 1 cut(s) | 281 |
| FokI | GGATG | 3 cut(s) | 617, 641, 902 |
| FriOI | GRGCYC | 2 cut(s) | 266, 1260 |
| Fsp4HI | GCNGC | 1 cut(s) | 281 |
| FspBI | CTAG | 2 cut(s) | 828, 1211 |
| FspI | TGCGCA | 1 cut(s) | 701 |
| GlaI | GCGC | 3 cut(s) | 330, 500, 701 |
| GluI | GCNGC | 1 cut(s) | 281 |
| HaeII | RGCGCY | 1 cut(s) | 332 |
| HaeIII | GGCC | 4 cut(s) | 159, 301, 457, 894 |
| HapII | CCGG | 4 cut(s) | 254, 393, 675, 973 |
| HhaI | GCGC | 3 cut(s) | 331, 501, 702 |
| Hin1I | GRCGYC | 1 cut(s) | 11 |
| Hin1II | CATG | 8 cut(s) | 300, 401, 637, 647, 685, 909, 1075, 1144 |
| Hin6I | GCGC | 3 cut(s) | 329, 499, 700 |
| HinP1I | GCGC | 3 cut(s) | 329, 499, 700 |
| HincII | GTYRAC | 1 cut(s) | 838 |
| HindII | GTYRAC | 1 cut(s) | 838 |
| HindIII | AAGCTT | 2 cut(s) | 507, 1205 |
| HinfI | GANTC | 9 cut(s) | 197, 250, 316, 466, 758, 875, 969, 1136, 1169 |
| HpaII | CCGG | 4 cut(s) | 254, 393, 675, 973 |
| Hpy166II | GTNNAC | 6 cut(s) | 234, 403, 486, 575, 691, 838 |
| Hpy188I | TCNGA | 9 cut(s) | 62, 321, 1029, 1045, 1080, 1159, 1177, 1283, 1322 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 91, 356, 762, 929, 1247 |
| Hpy8I | GTNNAC | 6 cut(s) | 234, 403, 486, 575, 691, 838 |
| Hpy99I | CGWCG | 4 cut(s) | 16, 217, 311, 750 |
| HpyAV | CCTTC | 3 cut(s) | 781, 1024, 1181 |
| HpyCH4III | ACNGT | 3 cut(s) | 572, 779, 1062 |
| HpyCH4IV | ACGT | 2 cut(s) | 236, 832 |
| HpyCH4V | TGCA | 8 cut(s) | 291, 647, 691, 861, 905, 959, 1100, 1301 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 337, 697, 1046, 1073 |
| HpyF3I | CTNAG | 6 cut(s) | 32, 260, 579, 587, 1077, 1203 |
| HpySE526I | ACGT | 2 cut(s) | 236, 832 |
| Hsp92I | GRCGYC | 1 cut(s) | 11 |
| Hsp92II | CATG | 8 cut(s) | 300, 401, 637, 647, 685, 909, 1075, 1144 |
| HspAI | GCGC | 3 cut(s) | 329, 499, 700 |
| Kzo9I | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| LguI | GCTCTTC | 1 cut(s) | 1187 |
| LmnI | GCTCC | 2 cut(s) | 371, 989 |
| Lsp1109I | GCAGC | 1 cut(s) | 267 |
| LweI | GCATC | 2 cut(s) | 63, 656 |
| MaeI | CTAG | 2 cut(s) | 828, 1211 |
| MaeII | ACGT | 2 cut(s) | 236, 832 |
| MaeIII | GTNAC | 3 cut(s) | 582, 781, 818 |
| MalI | GATC | 4 cut(s) | 480, 1004, 1082, 1114 |
| MboI | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| MboII | GAAGA | 6 cut(s) | 198, 528, 671, 944, 1204, 1305 |
| MflI | RGATCY | 1 cut(s) | 1112 |
| MhlI | GDGCHC | 4 cut(s) | 60, 266, 693, 1260 |
| MlsI | TGGCCA | 1 cut(s) | 894 |
| MluCI | AATT | 3 cut(s) | 27, 912, 1305 |
| MluNI | TGGCCA | 1 cut(s) | 894 |
| MlyI | GAGTC | 1 cut(s) | 978 |
| MmeI | TCCRAC | 3 cut(s) | 150, 692, 1146 |
| Mox20I | TGGCCA | 1 cut(s) | 894 |
| Mph1103I | ATGCAT | 1 cut(s) | 649 |
| MscI | TGGCCA | 1 cut(s) | 894 |
| MseI | TTAA | 2 cut(s) | 996, 1262 |
| MslI | CAYNNNNRTG | 2 cut(s) | 47, 686 |
| Msp20I | TGGCCA | 1 cut(s) | 894 |
| MspA1I | CMGCKG | 1 cut(s) | 280 |
| MspI | CCGG | 4 cut(s) | 254, 393, 675, 973 |
| MspR9I | CCNGG | 2 cut(s) | 255, 1011 |
| Mva1269I | GAATGC | 2 cut(s) | 291, 861 |
| MvaI | CCWGG | 1 cut(s) | 1011 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 337, 697, 1046, 1073 |
| NciI | CCSGG | 1 cut(s) | 255 |
| NcoI | CCATGG | 2 cut(s) | 296, 1140 |
| NdeI | CATATG | 2 cut(s) | 425, 471 |
| NdeII | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| NlaIII | CATG | 8 cut(s) | 300, 401, 637, 647, 685, 909, 1075, 1144 |
| NlaIV | GGNNCC | 1 cut(s) | 679 |
| NmeAIII | GCCGAG | 1 cut(s) | 185 |
| NmuCI | GTSAC | 1 cut(s) | 818 |
| NsbI | TGCGCA | 1 cut(s) | 701 |
| NsiI | ATGCAT | 1 cut(s) | 649 |
| NspI | RCATGY | 3 cut(s) | 637, 647, 909 |
| OliI | CACNNNNGTG | 1 cut(s) | 47 |
| PciSI | GCTCTTC | 1 cut(s) | 1187 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 227 |
| PctI | GAATGC | 2 cut(s) | 291, 861 |
| PfeI | GAWTC | 8 cut(s) | 197, 250, 316, 466, 758, 875, 1136, 1169 |
| PkrI | GCNGC | 1 cut(s) | 282 |
| PleI | GAGTC | 1 cut(s) | 977 |
| PmaCI | CACGTG | 1 cut(s) | 237 |
| PmlI | CACGTG | 1 cut(s) | 237 |
| PpsI | GAGTC | 1 cut(s) | 977 |
| Ppu21I | YACGTR | 1 cut(s) | 237 |
| Psp124BI | GAGCTC | 1 cut(s) | 266 |
| Psp6I | CCWGG | 1 cut(s) | 1009 |
| PspCI | CACGTG | 1 cut(s) | 237 |
| PspGI | CCWGG | 1 cut(s) | 1009 |
| PspN4I | GGNNCC | 1 cut(s) | 679 |
| PspPI | GGNCC | 2 cut(s) | 455, 533 |
| PsuI | RGATCY | 1 cut(s) | 1112 |
| PvuII | CAGCTG | 1 cut(s) | 280 |
| RsaI | GTAC | 6 cut(s) | 556, 574, 642, 795, 810, 845 |
| RsaNI | GTAC | 6 cut(s) | 555, 573, 641, 794, 809, 844 |
| RseI | CAYNNNNRTG | 2 cut(s) | 47, 686 |
| SacI | GAGCTC | 1 cut(s) | 266 |
| SapI | GCTCTTC | 1 cut(s) | 1187 |
| SaqAI | TTAA | 2 cut(s) | 996, 1262 |
| SatI | GCNGC | 1 cut(s) | 281 |
| Sau3AI | GATC | 4 cut(s) | 478, 1002, 1080, 1112 |
| Sau96I | GGNCC | 2 cut(s) | 455, 533 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 1 cut(s) | 978 |
| ScrFI | CCNGG | 2 cut(s) | 255, 1011 |
| SduI | GDGCHC | 4 cut(s) | 60, 266, 693, 1260 |
| SfaNI | GCATC | 2 cut(s) | 63, 656 |
| SfcI | CTRYAG | 1 cut(s) | 1240 |
| SinI | GGWCC | 1 cut(s) | 533 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 47, 686 |
| SmlI | CTYRAG | 1 cut(s) | 1108 |
| SmoI | CTYRAG | 1 cut(s) | 1108 |
| Sse9I | AATT | 3 cut(s) | 27, 912, 1305 |
| SsiI | CCGC | 2 cut(s) | 539, 547 |
| SspMI | CTAG | 2 cut(s) | 828, 1211 |
| SstI | GAGCTC | 1 cut(s) | 266 |
| StyD4I | CCNGG | 2 cut(s) | 253, 1009 |
| StyI | CCWWGG | 4 cut(s) | 296, 812, 947, 1140 |
| TaaI | ACNGT | 3 cut(s) | 572, 779, 1062 |
| TaiI | ACGT | 2 cut(s) | 239, 835 |
| TaqI | TCGA | 3 cut(s) | 616, 865, 1005 |
| TaqII | GACCGA | 2 cut(s) | 471, 1266 |
| TasI | AATT | 3 cut(s) | 27, 912, 1305 |
| TatI | WGTACW | 4 cut(s) | 554, 572, 640, 843 |
| TfiI | GAWTC | 8 cut(s) | 197, 250, 316, 466, 758, 875, 1136, 1169 |
| Tru1I | TTAA | 2 cut(s) | 996, 1262 |
| Tru9I | TTAA | 2 cut(s) | 996, 1262 |
| TscAI | CASTG | 2 cut(s) | 698, 1102 |
| TseFI | GTSAC | 1 cut(s) | 818 |
| TseI | GCWGC | 1 cut(s) | 280 |
| Tsp45I | GTSAC | 1 cut(s) | 818 |
| TspDTI | ATGAA | 2 cut(s) | 458, 1161 |
| TspGWI | ACGGA | 1 cut(s) | 781 |
| TspRI | CASTG | 2 cut(s) | 698, 1102 |
| VneI | GTGCAC | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 1 cut(s) | 533 |
| XapI | RAATTY | 2 cut(s) | 27, 912 |
| XceI | RCATGY | 3 cut(s) | 637, 647, 909 |
| XmiI | GTMKAC | 1 cut(s) | 485 |
| XspI | CTAG | 2 cut(s) | 828, 1211 |
| ZrmI | AGTACT | 1 cut(s) | 556 |
| Zsp2I | ATGCAT | 1 cut(s) | 649 |