Prupe.5G133300_v2.0.a1

START domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
12762721 .. 12766130
3410 bp
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UTR
Exon/CDS
Intron
Prupe.5G133300.1

Sequence Viewer

Length: 1308 bp
ATGGCTTTGGTTTCGGCTTTTCTGGATATTTTTCGGAGACCCACAATTGTTGAAGTCTTGGGCGAGCTTATGATGTTCATAACCCCTCTTTGGATTGCTGTGATTGTTGGGGTTTTTGTTGGGTGGGCATGGAAGCCAAAATGGGCGAGCTTGGTTGGCAGAGACTTGTTGGATTGCCCAATCTCCAAACAAAAGGAGTCTTCCTCATCGTCACAGACATCATCCACGTGTTTTGGTCCTATTCCCAGCTTGAGTTCATTGAGATTTCTGCTGCCCAGTTACCTTCCTTGGGCCGCCGATGATAGGAATCAAAAGGAGGCTCTTTCCATGCCACCTACCACCAATCCTGATTTCAGTTCCTCACAGAATGAAAGAGAAAAATCCGGTCTTGTGACCAATCAGGATTTACGGCACATATGTCAGCTGGTTGAGGAGAAAGATGGAGGTCCTGCTTGGATTCATATGATGGATCGGTCCACCCCAACCATGCGCTATCAAGCTTGGCGTAGAGATCCCGAGACTGGACCTCCACAATACCGCAGTAGTACTATATATGAGGATGCTACACCAGAGCAACTGAGGGATTTCTTTTGGGATGATGAGTTTCGATCGAAGTGGGATGACATGCTTATATATGCTTCTACTTTAGAAGAATGCCCCACTACTGGAACCATGTTAGTGCACTGGGTGCGCAAGTTCCCATTCTTTTGTAGCGACAGAGAATACTTGATAGGGCGCCGCATTTGGGAATCAGGACGGTCATACTACTGTGTAACAAAGGGAGTACCTTGCTCTTCTGTGCCAAGGCGCGACAAACCTAGACGTGTTGATTTGTACTATTCAAGTTGGTGCATTCGTGCAGTTGAATCAAAGAGAGGGGATGGCCAGCTTACTGCATGTGAGGTTTTACTGTTTCATCATGAAGATATGGGTATTCCTTGGGAAATTGCAAAACTTGGAGTCCGGCAAGGTATGTGGGGAGCTGTTAAAAAAATTGAACCTGGCTTGCGAGTATATCAGAAGGAGAGATCCTCTAAAGCCCCACTTTCACGGTGTGCTTACATGGCTCAGATCAACACCAAAGTCAGTGCAGACTACTTGAGATCAGTGGAAAACAGCACTAGTGACACCATGGCAATTGAAAAATCAGGTTCATCGGAGAAGAAACCAGAAGGCAAGAGCATACCTAAGCTTCTAGTTGTCGGTGGGGCTATTGCCCTCGCATGTAGCCTTGACCGGGGGCTCTTGACTAAGGCAGTTATATTTGGAGTGGCCCGAAGGTTCGCAAACATTGGTCGGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

49.33

Weight (kDa)

8.93

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 735
AccII CGCG 1 cut(s) 810
AciI CCGC 3 cut(s) 294, 538, 739
AclWI GGATC 3 cut(s) 477, 506, 1023
AcoI YGGCCR 1 cut(s) 883
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 736
AdeI CACNNNGTG 2 cut(s) 688, 1055
AfaI GTAC 3 cut(s) 547, 786, 836
AfiI CCNNNNNNNGG 7 cut(s) 90, 289, 303, 521, 665, 745, 1237
AflIII ACRYGT 2 cut(s) 227, 823
AgsI TTSAA 5 cut(s) 53, 843, 866, 998, 1142
AhlI ACTAGT 1 cut(s) 1121
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 1 cut(s) 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 8 cut(s) 67, 150, 249, 424, 500, 889, 983, 1192
AluI AGCT 8 cut(s) 67, 150, 249, 424, 500, 889, 983, 1192
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 3 cut(s) 31, 156, 512
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 3 cut(s) 477, 506, 1023
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 3 cut(s) 291, 883, 1272
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 1 cut(s) 271
AspLEI GCGC 4 cut(s) 492, 693, 738, 810
AspS9I GGNCC 6 cut(s) 236, 291, 446, 474, 524, 1273
AsuC2I CCSGG 1 cut(s) 1238
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 4 cut(s) 236, 446, 474, 524
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 1245
BbrPI CACGTG 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 258
BccI CCATC 3 cut(s) 434, 460, 875
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 1002
BcnI CCSGG 1 cut(s) 1238
BcoDI GTCTC 3 cut(s) 31, 156, 512
BcuI ACTAGT 1 cut(s) 1121
BfaI CTAG 3 cut(s) 819, 1122, 1196
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 3 cut(s) 272, 294, 739
BlsI GCNGC 3 cut(s) 273, 295, 740
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 1002, 1238
Bme18I GGWCC 4 cut(s) 236, 446, 474, 524
BmeT110I CYCGRG 1 cut(s) 515
BmgBI CACGTC 1 cut(s) 824
BmgT120I GGNCC 6 cut(s) 236, 291, 446, 474, 524, 1273
BmiI GGNNCC 2 cut(s) 670, 737
BmrFI CCNGG 2 cut(s) 1002, 1238
BmrI ACTGGG 2 cut(s) 270, 694
BmsI GCATC 1 cut(s) 550
BmuI ACTGGG 2 cut(s) 270, 694
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 1016, 1048
Bpu10I CCTNAGC 1 cut(s) 1188
BpuEI CTTGAG 2 cut(s) 271, 1120
BpuMI CCSGG 1 cut(s) 1238
BsaAI YACGTR 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 5 cut(s) 287, 803, 938, 1131, 1237
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 289, 303, 521, 665, 745, 1237
Bse1I ACTGG 4 cut(s) 276, 526, 670, 689
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 1002
BseDI CCNNGG 5 cut(s) 287, 803, 938, 1131, 1237
BseGI GGATG 5 cut(s) 221, 565, 601, 625, 886
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 7 cut(s) 90, 289, 303, 521, 665, 745, 1237
BseMII CTCAG 2 cut(s) 569, 1082
BseNI ACTGG 4 cut(s) 276, 526, 670, 689
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 245
BsgI GTGCAG 2 cut(s) 879, 1110
Bsh1236I CGCG 1 cut(s) 810
Bsh1285I CGRYCG 1 cut(s) 611
BshFI GGCC 3 cut(s) 293, 885, 1274
BshNI GGYRCC 1 cut(s) 735
BsiEI CGRYCG 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 3 cut(s) 384, 964, 1237
BslI CCNNNNNNNGG 7 cut(s) 90, 289, 303, 521, 665, 745, 1237
BsmAI GTCTC 3 cut(s) 31, 156, 512
BsmI GAATGC 2 cut(s) 659, 852
BsnI GGCC 3 cut(s) 293, 885, 1274
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 684, 1245
Bsp143I GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
Bsp19I CCATGG 1 cut(s) 1131
BspACI CCGC 3 cut(s) 294, 538, 739
BspANI GGCC 3 cut(s) 293, 885, 1274
BspCNI CTCAG 2 cut(s) 570, 1081
BspFNI CGCG 1 cut(s) 810
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 670, 737
BspPI GGATC 3 cut(s) 477, 506, 1023
BspQI GCTCTTC 1 cut(s) 799
BspT107I GGYRCC 1 cut(s) 735
BspTNI GGTCTC 1 cut(s) 31
BsrI ACTGG 4 cut(s) 276, 526, 670, 689
BssECI CCNNGG 5 cut(s) 287, 803, 938, 1131, 1237
BssMI GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
BssNI GRCGYC 1 cut(s) 736
BssT1I CCWWGG 4 cut(s) 287, 803, 938, 1131
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 4 cut(s) 759, 770, 912, 1053
Bst6I CTCTTC 1 cut(s) 799
BstACI GRCGYC 1 cut(s) 736
BstAPI GCANNNNNTGC 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 65, 148, 887, 1007
BstDEI CTNAG 4 cut(s) 578, 1068, 1188, 1251
BstDSI CCRYGG 1 cut(s) 1131
BstF5I GGATG 5 cut(s) 221, 565, 601, 625, 886
BstFNI CGCG 1 cut(s) 810
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 4 cut(s) 492, 693, 738, 810
BstKTI GATC 6 cut(s) 472, 514, 611, 1031, 1074, 1106
BstMAI GTCTC 3 cut(s) 31, 156, 512
BstMBI GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
BstMCI CGRYCG 1 cut(s) 611
BstMWI GCNNNNNNNGC 3 cut(s) 156, 688, 1064
BstNI CCWGG 1 cut(s) 1002
BstNSI RCATGY 3 cut(s) 628, 900, 1227
BstSCI CCNGG 2 cut(s) 1000, 1236
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 511, 1028
BstYI RGATCY 2 cut(s) 511, 1028
BsuRI GGCC 3 cut(s) 293, 885, 1274
BtgI CCRYGG 1 cut(s) 1131
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 5 cut(s) 221, 565, 601, 625, 886
BtsIMutI CAGTG 3 cut(s) 682, 1093, 1113
Cac8I GCNNGC 4 cut(s) 65, 148, 887, 1007
CciI TCATGA 1 cut(s) 919
CfoI GCGC 4 cut(s) 492, 693, 738, 810
Cfr13I GGNCC 6 cut(s) 236, 291, 446, 474, 524, 1273
Csp6I GTAC 3 cut(s) 546, 785, 835
CspCI CAANNNNNGTGG 6 cut(s) 31, 66, 214, 249, 956, 991
CviQI GTAC 3 cut(s) 546, 785, 835
DdeI CTNAG 4 cut(s) 578, 1068, 1188, 1251
DinI GGCGCC 1 cut(s) 737
DpnI GATC 6 cut(s) 471, 513, 610, 1030, 1073, 1105
DpnII GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
DraIII CACNNNGTG 2 cut(s) 688, 1055
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 799
EarI CTCTTC 1 cut(s) 799
Eco130I CCWWGG 4 cut(s) 287, 803, 938, 1131
Eco24I GRGCYC 1 cut(s) 1245
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 4 cut(s) 236, 446, 474, 524
Eco72I CACGTG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 1000
EcoT14I CCWWGG 4 cut(s) 287, 803, 938, 1131
EcoT38I GRGCYC 1 cut(s) 1245
EgeI GGCGCC 1 cut(s) 737
EheI GGCGCC 1 cut(s) 737
ErhI CCWWGG 4 cut(s) 287, 803, 938, 1131
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FauNDI CATATG 2 cut(s) 416, 462
Fnu4HI GCNGC 3 cut(s) 272, 294, 739
FokI GGATG 5 cut(s) 208, 572, 608, 632, 893
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 3 cut(s) 272, 294, 739
FspBI CTAG 3 cut(s) 819, 1122, 1196
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 4 cut(s) 491, 692, 737, 809
GluI GCNGC 3 cut(s) 272, 294, 739
GsaI CCCAGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 3 cut(s) 293, 885, 1274
HapII CCGG 3 cut(s) 384, 964, 1237
HhaI GCGC 4 cut(s) 492, 693, 738, 810
Hin1I GRCGYC 1 cut(s) 736
Hin6I GCGC 4 cut(s) 490, 691, 736, 808
HinP1I GCGC 4 cut(s) 490, 691, 736, 808
HindIII AAGCTT 2 cut(s) 498, 1190
HinfI GANTC 6 cut(s) 197, 307, 457, 749, 866, 960
HpaII CCGG 3 cut(s) 384, 964, 1237
Hpy166II GTNNAC 2 cut(s) 477, 682
Hpy188I TCNGA 5 cut(s) 36, 1020, 1071, 1159, 1299
Hpy188III TCNNGA 7 cut(s) 23, 347, 401, 515, 753, 920, 1246
Hpy8I GTNNAC 2 cut(s) 477, 682
HpyAV CCTTC 4 cut(s) 293, 1015, 1166, 1272
HpyCH4III ACNGT 4 cut(s) 759, 770, 912, 1053
HpyCH4IV ACGT 2 cut(s) 227, 823
HpyCH4V TGCA 6 cut(s) 682, 852, 860, 896, 950, 1091
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 688, 1064
HpyF3I CTNAG 4 cut(s) 578, 1068, 1188, 1251
HpySE526I ACGT 2 cut(s) 227, 823
Hsp92I GRCGYC 1 cut(s) 736
HspAI GCGC 4 cut(s) 490, 691, 736, 808
KasI GGCGCC 1 cut(s) 735
Kzo9I GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
LguI GCTCTTC 1 cut(s) 799
LmnI GCTCC 1 cut(s) 980
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 550
MaeI CTAG 3 cut(s) 819, 1122, 1196
MaeII ACGT 2 cut(s) 227, 823
MaeIII GTNAC 5 cut(s) 210, 278, 391, 772, 1124
MalI GATC 6 cut(s) 471, 513, 610, 1030, 1073, 1105
MboI GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
MboII GAAGA 5 cut(s) 192, 662, 786, 935, 1174
MfeI CAATTG 2 cut(s) 45, 1137
MflI RGATCY 2 cut(s) 511, 1028
MhlI GDGCHC 2 cut(s) 684, 1245
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 4 cut(s) 45, 945, 993, 1137
MluNI TGGCCA 1 cut(s) 885
Mly113I GGCGCC 1 cut(s) 736
MlyI GAGTC 2 cut(s) 206, 969
MmeI TCCRAC 2 cut(s) 150, 1277
Mox20I TGGCCA 1 cut(s) 885
MscI TGGCCA 1 cut(s) 885
MseI TTAA 1 cut(s) 987
MslI CAYNNNNRTG 2 cut(s) 226, 677
Msp20I TGGCCA 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 3 cut(s) 384, 964, 1237
MspR9I CCNGG 2 cut(s) 1002, 1238
MunI CAATTG 2 cut(s) 45, 1137
Mva1269I GAATGC 2 cut(s) 659, 852
MvaI CCWGG 1 cut(s) 1002
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 3 cut(s) 156, 688, 1064
NarI GGCGCC 1 cut(s) 736
NciI CCSGG 1 cut(s) 1238
NcoI CCATGG 1 cut(s) 1131
NdeI CATATG 2 cut(s) 416, 462
NdeII GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
NlaIV GGNNCC 2 cut(s) 670, 737
NmuCI GTSAC 3 cut(s) 210, 391, 1124
NsbI TGCGCA 1 cut(s) 692
NspI RCATGY 3 cut(s) 628, 900, 1227
PagI TCATGA 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 799
PctI GAATGC 2 cut(s) 659, 852
PfeI GAWTC 4 cut(s) 307, 457, 749, 866
PkrI GCNGC 3 cut(s) 273, 295, 740
Ple19I CGATCG 1 cut(s) 611
PleI GAGTC 2 cut(s) 205, 968
PluTI GGCGCC 1 cut(s) 739
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 2 cut(s) 205, 968
Ppu21I YACGTR 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 1000
PspCI CACGTG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 2 cut(s) 670, 737
PspPI GGNCC 6 cut(s) 236, 291, 446, 474, 524, 1273
PspPPI RGGWCCY 1 cut(s) 446
PsuI RGATCY 2 cut(s) 511, 1028
PvuI CGATCG 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 3 cut(s) 547, 786, 836
RsaNI GTAC 3 cut(s) 546, 785, 835
RseI CAYNNNNRTG 2 cut(s) 226, 677
SapI GCTCTTC 1 cut(s) 799
SaqAI TTAA 1 cut(s) 987
SatI GCNGC 3 cut(s) 272, 294, 739
Sau3AI GATC 6 cut(s) 469, 511, 608, 1028, 1071, 1103
Sau96I GGNCC 6 cut(s) 236, 291, 446, 474, 524, 1273
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 206, 969
ScrFI CCNGG 2 cut(s) 1002, 1238
SduI GDGCHC 2 cut(s) 684, 1245
SfaNI GCATC 1 cut(s) 550
SfoI GGCGCC 1 cut(s) 737
SinI GGWCC 4 cut(s) 236, 446, 474, 524
SmiMI CAYNNNNRTG 2 cut(s) 226, 677
SmlI CTYRAG 2 cut(s) 250, 1099
SmoI CTYRAG 2 cut(s) 250, 1099
SpeI ACTAGT 1 cut(s) 1121
Sse9I AATT 4 cut(s) 45, 945, 993, 1137
SsiI CCGC 3 cut(s) 294, 538, 739
SspDI GGCGCC 1 cut(s) 735
SspMI CTAG 3 cut(s) 819, 1122, 1196
StyD4I CCNGG 2 cut(s) 1000, 1236
StyI CCWWGG 4 cut(s) 287, 803, 938, 1131
TaaI ACNGT 4 cut(s) 759, 770, 912, 1053
TaiI ACGT 2 cut(s) 230, 826
TaqI TCGA 2 cut(s) 607, 611
TaqII GACCGA 1 cut(s) 462
TasI AATT 4 cut(s) 45, 945, 993, 1137
TatI WGTACW 2 cut(s) 545, 834
TauI GCSGC 2 cut(s) 296, 741
TfiI GAWTC 4 cut(s) 307, 457, 749, 866
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TscAI CASTG 3 cut(s) 689, 1093, 1113
TseFI GTSAC 3 cut(s) 210, 391, 1124
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 3 cut(s) 210, 391, 1124
TspDTI ATGAA 7 cut(s) 67, 246, 384, 449, 905, 936, 1143
TspRI CASTG 3 cut(s) 689, 1093, 1113
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 4 cut(s) 236, 446, 474, 524
XceI RCATGY 3 cut(s) 628, 900, 1227
XspI CTAG 3 cut(s) 819, 1122, 1196
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.