RLG00000004767

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003829
Physical Location & Seq
Forward (+)
62097378 .. 62099909
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004767

Sequence Viewer

Length: 1293 bp
ATGGCTTTGGCCTCGGCTTTGCTGGAGATTCTGCGAAGACCCACGATTGTTGAAGTTCTTGGGGAGCTTGTGAAGTTCATAACCCCTCTTTGGATTGCTGTGATTGTCGGGGTTTTCGTTGGGTGGGCGTGGCGGCCTAAATGGGTGACCGTGGTTGCTAGAGAATTGTTGGATAGCTCCACACAAAAGGAGTCGTCTTCCTCATCCTCTTCTTCATCGCCAACCGCACCATCCACGTGTGGGATTTCGATTTCGAGTTTGAGTTCGTTGCTGCCAAATTGCATTCCTTGGGCTGCTGACGATAGATATCAGAACCAGGCACCTACCACCAATAATGATTGCAGTTCCTCACAGATTGAACAAGAAGAATCCTGTAATATCTCCAATGAGGATTTGCGCCACATATGTCAGCTTGTGGAGGAGAAAGATGGCGGTCCTGCTTGGATTCATATGATGGATCGGTCAACCCCAACTATGGGATATCAAGCTTGGCGTAGAGATCCTCAGACTGGACCTCCACAATACCGAAGTAGAACTGTATTTGAAGATGCTTCACCTGAGACAGTGAGGGATTTCTTTTGGGATGATGAATTTCGTGCAAAGTGGGATGATATGCTTATTCATGCTTCTACTTTGGAAGAATGCCCGACTACTGGAACCATGCTAGTGCACTGGGTCCGCAAGTTTCCATTCTTTTGTAGCGACAGAGATTACACGATAGGCCGTCGCATTTGGGAATCGGGGCGATCATACTACTGTGTAACTAAGGGAGTTCCTTCCTCTGCTGTGCCAAGGCGTGACAAACCTAGACGTGTTGATCTGTACTATTCAAGTTGGTGCATTCGTGCAGTTGAATCAAAAAGAGGGGATGGCCAGCTTACTTCATGTGAGGTTTTACTGTTTCACCATGAAGATATGGGTATTCCATGGGAGATTGCGAAACTTGGTGTTCGTCAAGGTATGTGGGGAGCTGTTAAAAAGGTTGAACCAGGCCTACGTTTATATCAGAAGGAAAGAGCCGCTAAAGCGCCACTTTCGCGGTGTGCTAAAATGGCTCAGATCAACACGAAAGTCAGTGCTGATTACTTGAGATCGGTAGAAAACAGCACTAAGGATTCCATGGAGGTTGAAAATTCAGATTCAGCGGAGAAACCAACAAGGAGGAATATACCTAAAGCTCTAGTTGTCGGAGGGGCAATAGTTCTTGCTTGCAGTCTTGATCGGGGCCTCTTGACTAAGGCAGTTATATTTGGAGTAGCTCGAAGATTTGCCAAGATCGGGAGGAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

431

Amino Acids

48.39

Weight (kDa)

8.65

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 147 - 302 2e-08 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 1 cut(s) 1039
AciI CCGC 7 cut(s) 133, 225, 432, 679, 1020, 1039, 1145
AclWI GGATC 2 cut(s) 465, 494
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 2 cut(s) 590, 1132
AcvI CACGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 7 cut(s) 90, 240, 475, 476, 509, 653, 1278
AflIII ACRYGT 2 cut(s) 236, 811
AgsI TTSAA 7 cut(s) 53, 359, 545, 831, 854, 986, 1130
AjiI CACGTC 1 cut(s) 812
AjnI CCWGG 2 cut(s) 315, 988
AluBI AGCT 8 cut(s) 67, 177, 412, 488, 877, 971, 1178, 1259
AluI AGCT 8 cut(s) 67, 177, 412, 488, 877, 971, 1178, 1259
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 1 cut(s) 554
Alw44I GTGCAC 1 cut(s) 668
AlwI GGATC 2 cut(s) 465, 494
AoxI GGCC 6 cut(s) 9, 134, 721, 871, 991, 1225
ApaLI GTGCAC 1 cut(s) 668
ApeKI GCWGC 2 cut(s) 271, 293
ApoI RAATTY 2 cut(s) 590, 1132
AspLEI GCGC 2 cut(s) 399, 1030
AspS9I GGNCC 4 cut(s) 434, 512, 676, 1225
AsuHPI GGTGA 3 cut(s) 157, 546, 896
AvaII GGWCC 3 cut(s) 434, 512, 676
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 873
BanI GGYRCC 1 cut(s) 319
BbrPI CACGTG 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 43, 189
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 258, 280
BccI CCATC 4 cut(s) 238, 422, 448, 863
BceAI ACGGC 1 cut(s) 708
BciT130I CCWGG 2 cut(s) 317, 990
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 4 cut(s) 159, 665, 807, 1181
BfoI RGCGCY 1 cut(s) 1031
BisI GCNGC 4 cut(s) 134, 272, 294, 1020
BlsI GCNGC 4 cut(s) 135, 273, 295, 1021
Bme1390I CCNGG 2 cut(s) 317, 990
Bme18I GGWCC 3 cut(s) 434, 512, 676
BmgBI CACGTC 1 cut(s) 812
BmgT120I GGNCC 4 cut(s) 434, 512, 676, 1225
BmiI GGNNCC 4 cut(s) 321, 658, 677, 1226
BmrFI CCNGG 2 cut(s) 317, 990
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 43, 189
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 1108
BsaAI YACGTR 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 6 cut(s) 12, 150, 287, 791, 926, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 240, 475, 476, 509, 653, 1278
Bse1I ACTGG 3 cut(s) 514, 658, 677
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 2 cut(s) 317, 990
BseDI CCNNGG 6 cut(s) 12, 150, 287, 791, 926, 1119
BseGI GGATG 5 cut(s) 203, 230, 589, 613, 874
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 7 cut(s) 90, 240, 475, 476, 509, 653, 1278
BseMII CTCAG 3 cut(s) 518, 549, 1070
BseNI ACTGG 3 cut(s) 514, 658, 677
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 2 cut(s) 258, 280
BsgI GTGCAG 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 1039
BshFI GGCC 6 cut(s) 11, 136, 723, 873, 993, 1227
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 672
BslI CCNNNNNNNGG 7 cut(s) 90, 240, 475, 476, 509, 653, 1278
BsmAI GTCTC 1 cut(s) 554
BsmI GAATGC 3 cut(s) 282, 647, 840
BsnI GGCC 6 cut(s) 11, 136, 723, 873, 993, 1227
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
Bsp19I CCATGG 2 cut(s) 926, 1119
BspACI CCGC 7 cut(s) 133, 225, 432, 679, 1020, 1039, 1145
BspANI GGCC 6 cut(s) 11, 136, 723, 873, 993, 1227
BspCNI CTCAG 3 cut(s) 517, 550, 1069
BspFNI CGCG 1 cut(s) 1039
BspLI GGNNCC 4 cut(s) 321, 658, 677, 1226
BspPI GGATC 2 cut(s) 465, 494
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 3 cut(s) 514, 658, 677
BssECI CCNNGG 6 cut(s) 12, 150, 287, 791, 926, 1119
BssMI GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
BssT1I CCWWGG 4 cut(s) 287, 791, 926, 1119
Bst2UI CCWGG 2 cut(s) 317, 990
Bst4CI ACNGT 5 cut(s) 151, 538, 565, 758, 900
Bst6I CTCTTC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 875, 1210
BstDEI CTNAG 6 cut(s) 504, 558, 765, 1056, 1110, 1236
BstDSI CCRYGG 3 cut(s) 150, 926, 1119
BstEII GGTNACC 1 cut(s) 145
BstF5I GGATG 5 cut(s) 203, 230, 589, 613, 874
BstFNI CGCG 1 cut(s) 1039
BstH2I RGCGCY 1 cut(s) 1031
BstHHI GCGC 2 cut(s) 399, 1030
BstKTI GATC 8 cut(s) 460, 502, 749, 820, 1062, 1094, 1222, 1278
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
BstMWI GCNNNNNNNGC 3 cut(s) 1025, 1036, 1052
BstNI CCWGG 2 cut(s) 317, 990
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 315, 988
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 1 cut(s) 1039
BstV1I GCAGC 2 cut(s) 258, 280
BstV2I GAAGAC 2 cut(s) 43, 189
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 6 cut(s) 11, 136, 723, 873, 993, 1227
BtgI CCRYGG 3 cut(s) 150, 926, 1119
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 812
BtsCI GGATG 5 cut(s) 203, 230, 589, 613, 874
BtsIMutI CAGTG 3 cut(s) 570, 670, 1081
Cac8I GCNNGC 2 cut(s) 875, 1210
CfoI GCGC 2 cut(s) 399, 1030
Cfr13I GGNCC 4 cut(s) 434, 512, 676, 1225
Csp6I GTAC 1 cut(s) 823
CspCI CAANNNNNGTGG 4 cut(s) 31, 66, 944, 979
CviAII CATG 6 cut(s) 623, 661, 885, 908, 927, 1120
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 6 cut(s) 504, 558, 765, 1056, 1110, 1236
DpnI GATC 8 cut(s) 459, 501, 748, 819, 1061, 1093, 1221, 1277
DpnII GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 4 cut(s) 287, 791, 926, 1119
Eco147I AGGCCT 1 cut(s) 993
Eco32I GATATC 2 cut(s) 308, 482
Eco47I GGWCC 3 cut(s) 434, 512, 676
Eco72I CACGTG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 1225
EcoO65I GGTNACC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 315, 988
EcoRV GATATC 2 cut(s) 308, 482
EcoT14I CCWWGG 4 cut(s) 287, 791, 926, 1119
ErhI CCWWGG 4 cut(s) 287, 791, 926, 1119
FaeI CATG 6 cut(s) 626, 664, 888, 911, 930, 1123
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FatI CATG 6 cut(s) 622, 660, 884, 907, 926, 1119
FauNDI CATATG 2 cut(s) 404, 450
Fnu4HI GCNGC 4 cut(s) 134, 272, 294, 1020
FokI GGATG 5 cut(s) 190, 217, 596, 620, 881
Fsp4HI GCNGC 4 cut(s) 134, 272, 294, 1020
FspBI CTAG 4 cut(s) 159, 665, 807, 1181
GlaI GCGC 2 cut(s) 398, 1029
GluI GCNGC 4 cut(s) 134, 272, 294, 1020
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 1031
HaeIII GGCC 6 cut(s) 11, 136, 723, 873, 993, 1227
HhaI GCGC 2 cut(s) 399, 1030
Hin1II CATG 6 cut(s) 626, 664, 888, 911, 930, 1123
Hin6I GCGC 2 cut(s) 397, 1028
HinP1I GCGC 2 cut(s) 397, 1028
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 8 cut(s) 28, 191, 368, 445, 737, 854, 1115, 1139
HphI GGTGA 3 cut(s) 157, 546, 896
Hpy166II GTNNAC 2 cut(s) 465, 670
Hpy188I TCNGA 6 cut(s) 312, 507, 1008, 1059, 1138, 1190
Hpy188III TCNNGA 3 cut(s) 1217, 1231, 1279
Hpy8I GTNNAC 2 cut(s) 465, 670
Hpy99I CGWCG 1 cut(s) 729
HpyAV CCTTC 2 cut(s) 786, 1003
HpyCH4III ACNGT 5 cut(s) 151, 538, 565, 758, 900
HpyCH4IV ACGT 3 cut(s) 236, 811, 997
HpyCH4V TGCA 7 cut(s) 282, 342, 599, 670, 840, 848, 1212
HpyF10VI GCNNNNNNNGC 3 cut(s) 1025, 1036, 1052
HpyF3I CTNAG 6 cut(s) 504, 558, 765, 1056, 1110, 1236
HpySE526I ACGT 3 cut(s) 236, 811, 997
Hsp92II CATG 6 cut(s) 626, 664, 888, 911, 930, 1123
HspAI GCGC 2 cut(s) 397, 1028
Kzo9I GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
LmnI GCTCC 3 cut(s) 64, 182, 968
Lsp1109I GCAGC 2 cut(s) 258, 280
LweI GCATC 1 cut(s) 538
MaeI CTAG 4 cut(s) 159, 665, 807, 1181
MaeII ACGT 3 cut(s) 236, 811, 997
MaeIII GTNAC 3 cut(s) 145, 760, 797
MalI GATC 8 cut(s) 459, 501, 748, 819, 1061, 1093, 1221, 1277
MboI GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
MboII GAAGA 9 cut(s) 48, 189, 201, 204, 377, 557, 650, 923, 1275
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 1 cut(s) 672
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 4 cut(s) 164, 277, 590, 1132
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 150, 1168
Mox20I TGGCCA 1 cut(s) 873
MscI TGGCCA 1 cut(s) 873
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 2 cut(s) 235, 665
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 1145
MspR9I CCNGG 2 cut(s) 317, 990
Mva1269I GAATGC 3 cut(s) 282, 647, 840
MvaI CCWGG 2 cut(s) 317, 990
MvnI CGCG 1 cut(s) 1039
MwoI GCNNNNNNNGC 3 cut(s) 1025, 1036, 1052
NcoI CCATGG 2 cut(s) 926, 1119
NdeI CATATG 2 cut(s) 404, 450
NdeII GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
NlaIII CATG 6 cut(s) 626, 664, 888, 911, 930, 1123
NlaIV GGNNCC 4 cut(s) 321, 658, 677, 1226
NmuCI GTSAC 2 cut(s) 145, 797
PceI AGGCCT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 3 cut(s) 282, 647, 840
PfeI GAWTC 7 cut(s) 28, 368, 445, 737, 854, 1115, 1139
PkrI GCNGC 4 cut(s) 135, 273, 295, 1021
PleI GAGTC 1 cut(s) 199
PmaCI CACGTG 1 cut(s) 237
PmlI CACGTG 1 cut(s) 237
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 315, 988
PspCI CACGTG 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 315, 988
PspN4I GGNNCC 4 cut(s) 321, 658, 677, 1226
PspPI GGNCC 4 cut(s) 434, 512, 676, 1225
PsrI GAACNNNNNNTAC 2 cut(s) 978, 1010
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
RseI CAYNNNNRTG 2 cut(s) 235, 665
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 4 cut(s) 134, 272, 294, 1020
Sau3AI GATC 8 cut(s) 457, 499, 746, 817, 1059, 1091, 1219, 1275
Sau96I GGNCC 4 cut(s) 434, 512, 676, 1225
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 317, 990
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 1 cut(s) 538
SinI GGWCC 3 cut(s) 434, 512, 676
SmiMI CAYNNNNRTG 2 cut(s) 235, 665
SmlI CTYRAG 1 cut(s) 1087
SmoI CTYRAG 1 cut(s) 1087
Sse9I AATT 4 cut(s) 164, 277, 590, 1132
SseBI AGGCCT 1 cut(s) 993
SsiI CCGC 7 cut(s) 133, 225, 432, 679, 1020, 1039, 1145
SspMI CTAG 4 cut(s) 159, 665, 807, 1181
StuI AGGCCT 1 cut(s) 993
StyD4I CCNGG 2 cut(s) 315, 988
StyI CCWWGG 4 cut(s) 287, 791, 926, 1119
TaaI ACNGT 5 cut(s) 151, 538, 565, 758, 900
TaiI ACGT 3 cut(s) 239, 814, 1000
TaqI TCGA 3 cut(s) 248, 254, 1261
TaqII GACCGA 1 cut(s) 450
TasI AATT 4 cut(s) 164, 277, 590, 1132
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 136, 1022
TfiI GAWTC 7 cut(s) 28, 368, 445, 737, 854, 1115, 1139
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 3 cut(s) 570, 677, 1081
TseFI GTSAC 2 cut(s) 145, 797
TseI GCWGC 2 cut(s) 271, 293
Tsp45I GTSAC 2 cut(s) 145, 797
TspDTI ATGAA 7 cut(s) 67, 204, 437, 603, 611, 873, 924
TspRI CASTG 3 cut(s) 570, 677, 1081
VneI GTGCAC 1 cut(s) 668
VpaK11BI GGWCC 3 cut(s) 434, 512, 676
XapI RAATTY 2 cut(s) 590, 1132
XspI CTAG 4 cut(s) 159, 665, 807, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.