pycom06g11380

START domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
16686768 .. 16689348
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11380.1

Sequence Viewer

Length: 1314 bp
ATGGCGTTGCCGTTGGCTTTTCTGGAGATTCTGAGACGACCCACGATTGTGGAGGTGCTGGGGGAGCTGATGATGTTCATAATCCCTCTGTGGATTGGTGTGATTGTTGGGGTTTTTGTTGGGTGGGCGTGGAAGCCCAAATGGGCGAGCTTGGTTGGCCGAGACCTGTTGGATTGCCCAATCTCCAAACAAAAAGAATCCTCGTCCTCGTCCTCGCAGAGTTCGTCCACGTGTTTCGGTTCGATTCCGGGTCTGAGCTCGTTGAAGTTTCAGCTGCCCAGTTGCATTCCATGGCCTGCCGACGATAGGAATCCGGAAGACGCGCCATCTTTGCCACCTACCACCAATCCGGATTTCAGCACCTCAAAGATTGAAAGAGAAAGTTCCGGTCATGTGAACAAGGAGGATTTACAGCACATATGTCAGCTTGTTGAGGAGAAAGATGGAGGGCCTACATGGATCCATATGATGGATCGGTCTACCGCAGCTATGCGCTATCAAGCTTGGCGAAGAGACCCCGAGACTGGACCTCCACAATACCGCAGTAGTACTATATATGAGGATTGTACACCTGAGTTACTGAGGGATTTCTTCTGGGATGATGAGTTTCGAGCAAAGTGGGATGACATGCTTGTACATGCTTCTACTTTGGAAGAATGTCCAACCACCGGAACCATGTTGGTGCACTGGGTGCGCAAGTTCCCATTCTTTTGTAGCGACAGAGAGTACCTGATCGGTCGTCGCATTTGGGAATCGGGACGGACATACTACTGCATAACGAAGGGAGTACCCTCCTCTGCTGTGCCAAGGCGTGAAAAACCTAGACGTGTTGACTTGTACTATTCAAGTTGGTGCATTCGAGCAGTTGAATCGAAGAGAGGGGATGGCCAGCTTACTGCATGTGAAATTTTACTCTATCATCATGAAGATATGGGTATCCCTTGGGAAATTGCGAAATTTGGAGTCCGGCAAGGCATGTGGGGAACTGTTAAAAAGATCGAACCTGGCTTGCGTGCATATCAGAAAGAGAGAGCCTCTAAAGCCCCACTTTCACGGTGTGCTTACATGGCTCAGATCAACACTAAAGTCAGTGCAGACTACTTGAGATCTGTTGAAAACAGCACCAGCGATTCCATTTCGGTTGAAAAATCAGATTCGGACTCATCGGAGAAACCAGAAGGGAAGACGATACCTAAGATTCTATTTATCGGTGGGGCTATCGCCCTCGCCTGTAGTCTTGACCGAGGGCTCTTAACAAAGGCAGTTATATTCGGAGTAGCCCGAAGATTTGCAAAAATCGGTAGGAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

438

Amino Acids

49.48

Weight (kDa)

8.36

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 151 - 310 5.7e-08 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 695
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 323
AccIII TCCGGA 2 cut(s) 313, 349
AciI CCGC 2 cut(s) 483, 541
AclWI GGATC 3 cut(s) 454, 467, 480
AcoI YGGCCR 2 cut(s) 157, 886
AcsI RAATTY 2 cut(s) 906, 956
AcvI CACGTG 1 cut(s) 231
AdeI CACNNNGTG 2 cut(s) 691, 1058
AfaI GTAC 6 cut(s) 550, 568, 636, 728, 789, 839
AfiI CCNNNNNNNGG 4 cut(s) 306, 469, 524, 668
AflIII ACRYGT 2 cut(s) 230, 826
AgsI TTSAA 6 cut(s) 265, 374, 846, 869, 1115, 1145
AjiI CACGTC 1 cut(s) 827
AjnI CCWGG 1 cut(s) 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 8 cut(s) 67, 150, 258, 274, 427, 488, 503, 892
AluI AGCT 8 cut(s) 67, 150, 258, 274, 427, 488, 503, 892
Alw21I GWGCWC 2 cut(s) 260, 687
Alw26I GTCTC 4 cut(s) 28, 156, 507, 515
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 3 cut(s) 454, 467, 480
Ama87I CYCGRG 1 cut(s) 518
Aor13HI TCCGGA 2 cut(s) 313, 349
AoxI GGCC 4 cut(s) 157, 293, 449, 886
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 2 cut(s) 274, 485
ApoI RAATTY 2 cut(s) 906, 956
AspLEI GCGC 3 cut(s) 325, 495, 696
AspS9I GGNCC 2 cut(s) 449, 527
AsuC2I CCSGG 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 687
BalI TGGCCA 1 cut(s) 888
BamHI GGATCC 1 cut(s) 459
BanII GRGCYC 2 cut(s) 260, 1251
BbrPI CACGTG 1 cut(s) 231
BbsI GAAGAC 2 cut(s) 324, 1190
Bbv12I GWGCWC 2 cut(s) 260, 687
BbvI GCAGC 2 cut(s) 261, 497
BccI CCATC 4 cut(s) 334, 437, 463, 878
BcgI CGANNNNNNTGC 2 cut(s) 852, 886
BciT130I CCWGG 1 cut(s) 1005
BciVI GTATCC 1 cut(s) 947
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 4 cut(s) 28, 156, 507, 515
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 1231
BfuI GTATCC 1 cut(s) 947
BglII AGATCT 1 cut(s) 1106
BisI GCNGC 2 cut(s) 275, 486
BlsI GCNGC 2 cut(s) 276, 487
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 2 cut(s) 249, 1005
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 449, 527
BmiI GGNNCC 2 cut(s) 461, 673
BmrFI CCNGG 2 cut(s) 249, 1005
BmrI ACTGGG 2 cut(s) 273, 697
BmuI ACTGGG 2 cut(s) 273, 697
BpiI GAAGAC 2 cut(s) 324, 1190
BplI GAGNNNNNCTC 2 cut(s) 1019, 1051
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 1123
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 156, 507
BsaJI CCNNGG 4 cut(s) 290, 806, 941, 1243
BsaWI WCCGGW 4 cut(s) 313, 349, 386, 668
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 4 cut(s) 306, 469, 524, 668
Bse1I ACTGG 3 cut(s) 279, 529, 692
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 2 cut(s) 313, 349
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 4 cut(s) 290, 806, 941, 1243
BseGI GGATG 3 cut(s) 604, 628, 889
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 306, 469, 524, 668
BseMII CTCAG 5 cut(s) 23, 245, 564, 572, 1085
BseNI ACTGG 3 cut(s) 279, 529, 692
BseRI GAGGAG 2 cut(s) 449, 784
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 2 cut(s) 261, 497
BseYI CCCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1113
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 739
BshFI GGCC 4 cut(s) 159, 295, 451, 888
BsiEI CGRYCG 1 cut(s) 739
BsiHKAI GWGCWC 2 cut(s) 260, 687
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 6 cut(s) 248, 314, 350, 387, 669, 967
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 4 cut(s) 306, 469, 524, 668
BsmAI GTCTC 4 cut(s) 28, 156, 507, 515
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 2 cut(s) 285, 855
BsnI GGCC 4 cut(s) 159, 295, 451, 888
Bso31I GGTCTC 2 cut(s) 156, 507
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 260, 687, 1251
Bsp13I TCCGGA 2 cut(s) 313, 349
Bsp1407I TGTACA 2 cut(s) 566, 634
Bsp143I GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 2 cut(s) 483, 541
BspANI GGCC 4 cut(s) 159, 295, 451, 888
BspCNI CTCAG 5 cut(s) 24, 246, 565, 573, 1084
BspEI TCCGGA 2 cut(s) 313, 349
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 2 cut(s) 461, 673
BspPI GGATC 3 cut(s) 454, 467, 480
BspTNI GGTCTC 2 cut(s) 156, 507
BsrGI TGTACA 2 cut(s) 566, 634
BsrI ACTGG 3 cut(s) 279, 529, 692
BssECI CCNNGG 4 cut(s) 290, 806, 941, 1243
BssMI GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
BssT1I CCWWGG 3 cut(s) 290, 806, 941
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 2 cut(s) 988, 1056
Bst6I CTCTTC 2 cut(s) 505, 869
BstAPI GCANNNNNTGC 1 cut(s) 691
BstAUI TGTACA 2 cut(s) 566, 634
BstBAI YACGTR 1 cut(s) 231
BstC8I GCNNGC 5 cut(s) 148, 297, 890, 1010, 1014
BstDEI CTNAG 6 cut(s) 32, 254, 573, 581, 1071, 1194
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 604, 628, 889
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 3 cut(s) 325, 495, 696
BstKTI GATC 6 cut(s) 462, 475, 735, 999, 1077, 1109
BstMAI GTCTC 4 cut(s) 28, 156, 507, 515
BstMBI GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
BstMCI CGRYCG 1 cut(s) 739
BstMWI GCNNNNNNNGC 6 cut(s) 64, 156, 331, 691, 1040, 1067
BstNI CCWGG 1 cut(s) 1005
BstNSI RCATGY 4 cut(s) 631, 641, 903, 979
BstSCI CCNGG 2 cut(s) 247, 1003
BstSFI CTRYAG 1 cut(s) 1231
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 261, 497
BstV2I GAAGAC 2 cut(s) 324, 1190
BstX2I RGATCY 2 cut(s) 459, 1106
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 2 cut(s) 459, 1106
BsuI GTATCC 1 cut(s) 947
BsuRI GGCC 4 cut(s) 159, 295, 451, 888
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 827
BtsCI GGATG 3 cut(s) 604, 628, 889
BtsIMutI CAGTG 2 cut(s) 685, 1096
Cac8I GCNNGC 5 cut(s) 148, 297, 890, 1010, 1014
CciI TCATGA 1 cut(s) 922
CfoI GCGC 3 cut(s) 325, 495, 696
Cfr13I GGNCC 2 cut(s) 449, 527
CseI GACGC 1 cut(s) 329
Csp6I GTAC 6 cut(s) 549, 567, 635, 727, 788, 838
CspCI CAANNNNNGTGG 2 cut(s) 959, 994
CviQI GTAC 6 cut(s) 549, 567, 635, 727, 788, 838
DdeI CTNAG 6 cut(s) 32, 254, 573, 581, 1071, 1194
DpnI GATC 6 cut(s) 461, 474, 734, 998, 1076, 1108
DpnII GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
DraIII CACNNNGTG 2 cut(s) 691, 1058
EaeI YGGCCR 2 cut(s) 157, 886
Eam1104I CTCTTC 2 cut(s) 505, 869
EarI CTCTTC 2 cut(s) 505, 869
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 3 cut(s) 290, 806, 941
Eco24I GRGCYC 2 cut(s) 260, 1251
Eco31I GGTCTC 2 cut(s) 156, 507
Eco47I GGWCC 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 290, 806, 941
EcoT38I GRGCYC 2 cut(s) 260, 1251
ErhI CCWWGG 3 cut(s) 290, 806, 941
Esp3I CGTCTC 1 cut(s) 28
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 1 cut(s) 771
FauNDI CATATG 2 cut(s) 419, 465
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 275, 486
FokI GGATG 3 cut(s) 611, 635, 896
FriOI GRGCYC 2 cut(s) 260, 1251
Fsp4HI GCNGC 2 cut(s) 275, 486
FspBI CTAG 1 cut(s) 822
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 3 cut(s) 324, 494, 695
GluI GCNGC 2 cut(s) 275, 486
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 4 cut(s) 159, 295, 451, 888
HapII CCGG 6 cut(s) 248, 314, 350, 387, 669, 967
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 325, 495, 696
Hin6I GCGC 3 cut(s) 323, 493, 694
HinP1I GCGC 3 cut(s) 323, 493, 694
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 501
HpaII CCGG 6 cut(s) 248, 314, 350, 387, 669, 967
Hpy166II GTNNAC 6 cut(s) 228, 397, 480, 569, 685, 832
Hpy188I TCNGA 9 cut(s) 33, 255, 1023, 1074, 1153, 1159, 1168, 1274, 1313
Hpy188III TCNNGA 6 cut(s) 23, 314, 350, 756, 923, 1238
Hpy8I GTNNAC 6 cut(s) 228, 397, 480, 569, 685, 832
Hpy99I CGWCG 2 cut(s) 305, 744
HpyAV CCTTC 2 cut(s) 775, 1172
HpyCH4III ACNGT 2 cut(s) 988, 1056
HpyCH4IV ACGT 2 cut(s) 230, 826
HpyCH4V TGCA 8 cut(s) 285, 685, 774, 855, 899, 1016, 1094, 1292
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 156, 331, 691, 1040, 1067
HpyF3I CTNAG 6 cut(s) 32, 254, 573, 581, 1071, 1194
HpySE526I ACGT 2 cut(s) 230, 826
HspAI GCGC 3 cut(s) 323, 493, 694
Kpn2I TCCGGA 2 cut(s) 313, 349
Kzo9I GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 2 cut(s) 261, 497
MaeI CTAG 1 cut(s) 822
MaeII ACGT 2 cut(s) 230, 826
MaeIII GTNAC 1 cut(s) 576
MalI GATC 6 cut(s) 461, 474, 734, 998, 1076, 1108
MboI GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
MboII GAAGA 8 cut(s) 329, 522, 583, 665, 886, 938, 1195, 1296
MflI RGATCY 2 cut(s) 459, 1106
MhlI GDGCHC 3 cut(s) 260, 687, 1251
MlsI TGGCCA 1 cut(s) 888
MluCI AATT 3 cut(s) 906, 948, 956
MluNI TGGCCA 1 cut(s) 888
MlyI GAGTC 2 cut(s) 972, 1154
MmeI TCCRAC 2 cut(s) 150, 686
Mox20I TGGCCA 1 cut(s) 888
MroI TCCGGA 2 cut(s) 313, 349
MscI TGGCCA 1 cut(s) 888
MseI TTAA 2 cut(s) 990, 1253
MslI CAYNNNNRTG 2 cut(s) 47, 680
Msp20I TGGCCA 1 cut(s) 888
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 6 cut(s) 248, 314, 350, 387, 669, 967
MspR9I CCNGG 2 cut(s) 249, 1005
Mva1269I GAATGC 2 cut(s) 285, 855
MvaI CCWGG 1 cut(s) 1005
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 6 cut(s) 64, 156, 331, 691, 1040, 1067
NciI CCSGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 2 cut(s) 419, 465
NdeII GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
NlaIV GGNNCC 2 cut(s) 461, 673
NmeAIII GCCGAG 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 695
NspI RCATGY 4 cut(s) 631, 641, 903, 979
OliI CACNNNNGTG 1 cut(s) 47
PagI TCATGA 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 2 cut(s) 285, 855
PfeI GAWTC 9 cut(s) 28, 197, 244, 310, 752, 869, 1130, 1154, 1198
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 2 cut(s) 276, 487
PleI GAGTC 2 cut(s) 971, 1154
PmaCI CACGTG 1 cut(s) 231
PmlI CACGTG 1 cut(s) 231
PpsI GAGTC 2 cut(s) 971, 1154
Ppu21I YACGTR 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 1003
PspCI CACGTG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 1003
PspN4I GGNNCC 2 cut(s) 461, 673
PspPI GGNCC 2 cut(s) 449, 527
PsuI RGATCY 2 cut(s) 459, 1106
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 6 cut(s) 550, 568, 636, 728, 789, 839
RsaNI GTAC 6 cut(s) 549, 567, 635, 727, 788, 838
RseI CAYNNNNRTG 2 cut(s) 47, 680
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 990, 1253
SatI GCNGC 2 cut(s) 275, 486
Sau3AI GATC 6 cut(s) 459, 472, 732, 996, 1074, 1106
Sau96I GGNCC 2 cut(s) 449, 527
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 2 cut(s) 972, 1154
ScrFI CCNGG 2 cut(s) 249, 1005
SduI GDGCHC 3 cut(s) 260, 687, 1251
SfcI CTRYAG 1 cut(s) 1231
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 2 cut(s) 47, 680
SmlI CTYRAG 1 cut(s) 1102
SmoI CTYRAG 1 cut(s) 1102
Sse9I AATT 3 cut(s) 906, 948, 956
SsiI CCGC 2 cut(s) 483, 541
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 247, 1003
StyI CCWWGG 3 cut(s) 290, 806, 941
TaaI ACNGT 2 cut(s) 988, 1056
TaiI ACGT 2 cut(s) 233, 829
TaqI TCGA 5 cut(s) 242, 610, 859, 872, 999
TaqII GACCGA 3 cut(s) 465, 725, 1257
TasI AATT 3 cut(s) 906, 948, 956
TatI WGTACW 4 cut(s) 548, 566, 634, 837
TfiI GAWTC 9 cut(s) 28, 197, 244, 310, 752, 869, 1130, 1154, 1198
Tru1I TTAA 2 cut(s) 990, 1253
Tru9I TTAA 2 cut(s) 990, 1253
TscAI CASTG 2 cut(s) 692, 1096
TseI GCWGC 2 cut(s) 274, 485
TspDTI ATGAA 2 cut(s) 67, 939
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 2 cut(s) 692, 1096
Van91I CCANNNNNTGG 1 cut(s) 469
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 2 cut(s) 906, 956
XceI RCATGY 4 cut(s) 631, 641, 903, 979
XmiI GTMKAC 1 cut(s) 479
XspI CTAG 1 cut(s) 822
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.