Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002242.1

Orthogroup ID

OG0003829

Physical Location & Seq

Genomic Coordinates Reverse (-)

35098 .. 36713

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002242.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgaaagatggaggtccggcttggatacatatgatggatcgctcaactccaactatggcctaccaagcttggcgtagggatccaaagattggtcctcctcaatatcgtaacaggactgtgtatgaggatgcaacaccggagctagtgagggactttttctgggatgatgagttccggttaaggtgggacaacatgcttagtgatgccacaaccttagatgagtgcccaaccacaggaaccatggttgttcagtggataaagaagttcccgttcttctgtaaagacagggaatacataataggacgtcgaatttgggagtcaggaaggaagtattattgtgtgacaaagggagtaccctatccttctattcaaaggcatgacaaaccaagacgtgtggatcactactactcaagttggtgcattcaagcagtggaatcaagacacggcaatggccagctgactgcatgtgaagttcaactgtttcatcaagaggaaacgggaatcccatgggaaattgcaaaacttgctgtacgaaaaggattgtgggatactgtaaagaacatagagtctggtttacgtgcttaccagaaagagagagcgttaggtggaataatttctcggcctgcctttctggctcagatcaacaccaaaataaatctagagtacctgaaagcctccgctggcactgaggattcgtcacaaactgcagtggtgactacatctgacaaacctttcagtgggaacatacggaatctcataattgttggtgggagtattctccttgcatgcactcttgaccgggggtttctggtgaagacagtaatattcggtgtggccgatgtggccaggaagtttgcaaatgtagggaagaagtcaaaaccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

295

Amino Acids

33.75

Weight (kDa)

9.35

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64720
fragaria_vesca	FvH4_5g10520 FvH4_5g10520 FvH4_7g32880
malus_domestica	MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1
prunus_persica	Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1
pyrus_communis	pycom06g11380 pycom07g27110 pycom14g11410
rosa_chinensis	RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601
rosa_laevigata	RLG00000004767 RLG00000026156
rosa_multiflora	Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016
rosa_roxburghii	Rroxscaffold_3G00267260 Rroxscaffold_4G00277860
rosa_rugosa	Rorug01G0436600 Rorug06G0482800
rosa_samantha	Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300
rosa_wichuraiana	Rw0G002630 Rw1G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	4 cut(s)	45, 74, 87, 405
AcoI	YGGCCR	3 cut(s)	451, 834, 843
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	304
AfaI	GTAC	3 cut(s)	354, 531, 665
AfiI	CCNNNNNNNGG	3 cut(s)	89, 233, 737
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	371, 425, 476
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	845
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	3 cut(s)	68, 142, 457
AluI	AGCT	3 cut(s)	68, 142, 457
AlwI	GGATC	4 cut(s)	45, 74, 87, 405
AoxI	GGCC	5 cut(s)	57, 451, 620, 834, 843
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
Asp700I	GAANNNNTTC	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	14, 92
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	2 cut(s)	724, 823
AvaII	GGWCC	2 cut(s)	14, 92
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	2 cut(s)	453, 845
BamHI	GGATCC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	821
BccI	CCATC	2 cut(s)	2, 28
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	847
BciVI	GTATCC	2 cut(s)	18, 541
BcnI	CCSGG	1 cut(s)	800
BfaI	CTAG	2 cut(s)	143, 659
BfmI	CTRYAG	1 cut(s)	705
BfuI	GTATCC	2 cut(s)	18, 541
BglI	GCCNNNNNGGC	2 cut(s)	632, 842
Bme1390I	CCNGG	2 cut(s)	800, 847
Bme18I	GGWCC	2 cut(s)	14, 92
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	14, 92
BmiI	GGNNCC	2 cut(s)	81, 238
BmrFI	CCNGG	2 cut(s)	800, 847
BmsI	GCATC	2 cut(s)	118, 193
BpiI	GAAGAC	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	800
BsaAI	YACGTR	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	240, 506, 799
BsaWI	WCCGGW	2 cut(s)	136, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 233, 737
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	240, 506, 799
BseGI	GGATG	2 cut(s)	133, 169
BseLI	CCNNNNNNNGG	3 cut(s)	89, 233, 737
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	650, 678
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	227
BshFI	GGCC	5 cut(s)	59, 453, 622, 836, 845
BsiSI	CCGG	4 cut(s)	17, 137, 175, 799
BslFI	GGGAC	2 cut(s)	164, 200
BslI	CCNNNNNNNGG	3 cut(s)	89, 233, 737
BsmFI	GGGAC	2 cut(s)	164, 200
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	5 cut(s)	59, 453, 622, 836, 845
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	37, 79, 397, 639
Bsp19I	CCATGG	2 cut(s)	240, 506
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	5 cut(s)	59, 453, 622, 836, 845
BspCNI	CTCAG	2 cut(s)	649, 679
BspLI	GGNNCC	2 cut(s)	81, 238
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	4 cut(s)	45, 74, 87, 405
BsrDI	GCAATG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	240, 506, 799
BssMI	GATC	4 cut(s)	37, 79, 397, 639
BssNI	GRCGYC	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	240, 506
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	4 cut(s)	118, 480, 553, 820
BstACI	GRCGYC	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	455, 624, 682, 787
BstDEI	CTNAG	4 cut(s)	197, 214, 636, 687
BstDSI	CCRYGG	2 cut(s)	240, 506
BstF5I	GGATG	2 cut(s)	133, 169
BstKTI	GATC	4 cut(s)	40, 82, 400, 642
BstMBI	GATC	4 cut(s)	37, 79, 397, 639
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 524, 632, 842
BstNI	CCWGG	1 cut(s)	847
BstNSI	RCATGY	3 cut(s)	196, 468, 789
BstSCI	CCNGG	2 cut(s)	798, 845
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	2 cut(s)	18, 541
BsuRI	GGCC	5 cut(s)	59, 453, 622, 836, 845
BtgI	CCRYGG	2 cut(s)	240, 506
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	133, 169
BtsI	GCAGTG	2 cut(s)	435, 714
BtsIMutI	CAGTG	5 cut(s)	257, 435, 684, 714, 742
Cac8I	GCNNGC	4 cut(s)	455, 624, 682, 787
Cfr13I	GGNCC	2 cut(s)	14, 92
Csp6I	GTAC	3 cut(s)	353, 530, 664
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	6 cut(s)	193, 241, 377, 465, 507, 786
CviQI	GTAC	3 cut(s)	353, 530, 664
DdeI	CTNAG	4 cut(s)	197, 214, 636, 687
DpnI	GATC	4 cut(s)	39, 81, 399, 641
DpnII	GATC	4 cut(s)	37, 79, 397, 639
EaeI	YGGCCR	3 cut(s)	451, 834, 843
Eco130I	CCWWGG	2 cut(s)	240, 506
Eco47I	GGWCC	2 cut(s)	14, 92
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	240, 506
ErhI	CCWWGG	2 cut(s)	240, 506
FaeI	CATG	6 cut(s)	196, 244, 380, 468, 510, 789
FaqI	GGGAC	2 cut(s)	164, 200
FatI	CATG	6 cut(s)	192, 240, 376, 464, 506, 785
FauNDI	CATATG	1 cut(s)	30
FokI	GGATG	2 cut(s)	140, 176
FspBI	CTAG	2 cut(s)	143, 659
HaeIII	GGCC	5 cut(s)	59, 453, 622, 836, 845
HapII	CCGG	4 cut(s)	17, 137, 175, 799
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	6 cut(s)	196, 244, 380, 468, 510, 789
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	6 cut(s)	317, 434, 501, 566, 692, 751
HpaII	CCGG	4 cut(s)	17, 137, 175, 799
HphI	GGTGA	2 cut(s)	724, 823
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	2 cut(s)	639, 724
Hpy188III	TCNNGA	5 cut(s)	321, 438, 488, 659, 794
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	318, 372
HpyCH4III	ACNGT	4 cut(s)	118, 480, 553, 820
HpyCH4IV	ACGT	3 cut(s)	304, 391, 577
HpyCH4V	TGCA	8 cut(s)	131, 420, 464, 518, 707, 785, 789, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 524, 632, 842
HpyF3I	CTNAG	4 cut(s)	197, 214, 636, 687
HpySE526I	ACGT	3 cut(s)	304, 391, 577
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	6 cut(s)	196, 244, 380, 468, 510, 789
Kzo9I	GATC	4 cut(s)	37, 79, 397, 639
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	2 cut(s)	118, 193
MaeI	CTAG	2 cut(s)	143, 659
MaeII	ACGT	3 cut(s)	304, 391, 577
MaeIII	GTNAC	4 cut(s)	107, 340, 696, 712
MalI	GATC	4 cut(s)	39, 81, 399, 641
MboI	GATC	4 cut(s)	37, 79, 397, 639
MboII	GAAGA	3 cut(s)	265, 826, 880
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	2 cut(s)	453, 845
MluCI	AATT	4 cut(s)	309, 513, 612, 759
MluNI	TGGCCA	2 cut(s)	453, 845
MlyI	GAGTC	2 cut(s)	326, 575
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	5, 105, 108, 118, 141, 484, 682, 685
Mox20I	TGGCCA	2 cut(s)	453, 845
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	2 cut(s)	453, 845
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	2 cut(s)	453, 845
MspA1I	CMGCKG	2 cut(s)	457, 680
MspI	CCGG	4 cut(s)	17, 137, 175, 799
MspR9I	CCNGG	2 cut(s)	800, 847
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	4 cut(s)	65, 524, 632, 842
NciI	CCSGG	1 cut(s)	800
NcoI	CCATGG	2 cut(s)	240, 506
NdeI	CATATG	1 cut(s)	30
NdeII	GATC	4 cut(s)	37, 79, 397, 639
NlaIII	CATG	6 cut(s)	196, 244, 380, 468, 510, 789
NlaIV	GGNNCC	2 cut(s)	81, 238
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	3 cut(s)	340, 696, 712
NspI	RCATGY	3 cut(s)	196, 468, 789
PaeI	GCATGC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	834
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	4 cut(s)	434, 501, 692, 751
PflMI	CCANNNNNTGG	1 cut(s)	89
PleI	GAGTC	2 cut(s)	325, 574
PpsI	GAGTC	2 cut(s)	325, 574
Ppu21I	YACGTR	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	2 cut(s)	81, 238
PspPI	GGNCC	2 cut(s)	14, 92
PstI	CTGCAG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	354, 531, 665
RsaNI	GTAC	3 cut(s)	353, 530, 664
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	37, 79, 397, 639
Sau96I	GGNCC	2 cut(s)	14, 92
SchI	GAGTC	2 cut(s)	326, 575
ScrFI	CCNGG	2 cut(s)	800, 847
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	118, 193
SfcI	CTRYAG	1 cut(s)	705
SfiI	GGCCNNNNNGGCC	1 cut(s)	842
SinI	GGWCC	2 cut(s)	14, 92
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SphI	GCATGC	1 cut(s)	789
Sse9I	AATT	4 cut(s)	309, 513, 612, 759
SsiI	CCGC	1 cut(s)	678
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	2 cut(s)	143, 659
StyD4I	CCNGG	2 cut(s)	798, 845
StyI	CCWWGG	2 cut(s)	240, 506
TaaI	ACNGT	4 cut(s)	118, 480, 553, 820
TaiI	ACGT	3 cut(s)	307, 394, 580
TaqI	TCGA	1 cut(s)	307
TasI	AATT	4 cut(s)	309, 513, 612, 759
TfiI	GAWTC	4 cut(s)	434, 501, 692, 751
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	5 cut(s)	257, 435, 691, 714, 742
TseFI	GTSAC	3 cut(s)	340, 696, 712
Tsp45I	GTSAC	3 cut(s)	340, 696, 712
TspDTI	ATGAA	2 cut(s)	17, 473
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	5 cut(s)	257, 435, 691, 714, 742
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	14, 92
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	3 cut(s)	196, 468, 789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	2 cut(s)	143, 659
ZraI	GACGTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.