Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003829

Physical Location & Seq

Genomic Coordinates Reverse (-)

68858862 .. 68860596

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG432200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGTAACCAACATGGATGCTCTGCATGAGATTTTGGAAAAGGTGAAAATAGAGTACACGGACTTTGTGGTGTTTCTGGGTCCTCTGTGGACGGCTTTCCTTATTGGTATTGTGATTGGTTGGGCATGGAAGCCGAAGTGGGCAACATTTGGTCAGGAAAAACTAGGCTCCTCTGTTTCTAAAGTCTTGGATTCGTCTATGCCTACTTCGCCGGCTAGGTCTGTGATGTCACCACCTTTAAAAGGGTTCTCATCAGCACCGTGCTTGTTCCAAGGCTATGAAGCTTGGTTCATTAACCATGCAGTGCAGAAGAGGCTTTCTCCCTCGCCTATCGAATTTGATGACCACAGTACCTGTACATCGCAGATGAATGAGATGAATGAGAAGAAGTCTAATGTTGTGGCTCAGGAGGATGTAGAAAATCTATGTCGGCTTGTAGATATGAAAGATGGAGGTCCGGCTTGGATACATATGATGGATCGTTCAACTCCAACTATGGCCTACCAAGCTTGGCGTAGGGATCCAAAGATTGGTCCTCCTCAATATCGTACCAGGACTGTGTATGAGGATGTAACGCCGGAGCTAGTGAGGGACTTTTTCTGGGATGATGAGTTCCGGTTAAGGTGGGACGACATGCTTAGTGATGCCACAACCTTAGATGAGTGCCCAACCACAGGAACCATGGTTGTTCAGTGGATAAAGAAGTTCCCGTTCTTCTGTAAAGACAGGGAGTACATAATAGGACGTCGAATTTGGGAGTCAGGAAGGAAGTACTATTGTGTGACAAAGGGAGTACCCTATCCTTCTATTCAAAGGCATGACAAACCAAGACGTGTGGATCACTACTACTCAAGTTGGTGCATTCAAGCAGGTAAACTCATGCTAGTCTTCTTTAATCTTATCAAAATGACATTAGGAATATTCAGTGCTTTGGTTTCATCAGTTGCAATGATCAAGTGGCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

323

Amino Acids

37.36

Weight (kDa)

8.08

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64720
fragaria_vesca	FvH4_5g10520 FvH4_5g10520 FvH4_7g32880
malus_domestica	MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1
prunus_persica	Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1
pyrus_communis	pycom06g11380 pycom07g27110 pycom14g11410
rosa_chinensis	RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601
rosa_laevigata	RLG00000004767 RLG00000026156
rosa_multiflora	Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016
rosa_roxburghii	Rroxscaffold_3G00267260 Rroxscaffold_4G00277860
rosa_rugosa	Rorug01G0436600 Rorug06G0482800
rosa_samantha	Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300
rosa_wichuraiana	Rw0G002630 Rw1G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	751
Acc36I	ACCTGC	1 cut(s)	863
AccB7I	CCANNNNNTGG	1 cut(s)	533
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	489, 518, 531, 849
AcsI	RAATTY	2 cut(s)	338, 753
AcyI	GRCGYC	1 cut(s)	748
AfaI	GTAC	7 cut(s)	59, 355, 361, 553, 737, 776, 798
AfiI	CCNNNNNNNGG	3 cut(s)	245, 533, 677
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	3 cut(s)	489, 815, 869
AjiI	CACGTC	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	554
AloI	GAACNNNNNNTCC	2 cut(s)	599, 631
AluBI	AGCT	3 cut(s)	287, 512, 586
AluI	AGCT	3 cut(s)	287, 512, 586
AlwI	GGATC	4 cut(s)	489, 518, 531, 849
AlwNI	CAGNNNCTG	1 cut(s)	357
AoxI	GGCC	2 cut(s)	501, 962
ApoI	RAATTY	2 cut(s)	338, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AspS9I	GGNCC	3 cut(s)	83, 458, 536
AsuHPI	GGTGA	2 cut(s)	58, 225
AvaII	GGWCC	3 cut(s)	83, 458, 536
BaeGI	GKGCMC	1 cut(s)	671
BaeI	ACNNNNGTAYC	2 cut(s)	337, 370
BamHI	GGATCC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	883
BccI	CCATC	2 cut(s)	446, 472
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	556
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	954
BfaI	CTAG	4 cut(s)	167, 219, 587, 887
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	462
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	3 cut(s)	83, 458, 536
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	3 cut(s)	83, 458, 536
BmiI	GGNNCC	4 cut(s)	84, 172, 525, 682
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	10, 637
BpiI	GAAGAC	1 cut(s)	883
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	838
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	274, 684
BsaWI	WCCGGW	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 533, 677
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	957
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	274, 684
BseGI	GGATG	4 cut(s)	25, 421, 577, 613
BseLI	CCNNNNNNNGG	3 cut(s)	245, 533, 677
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	163, 531
BseSI	GKGCMC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	503, 964
BsiSI	CCGG	4 cut(s)	215, 461, 581, 619
BslFI	GGGAC	2 cut(s)	608, 644
BslI	CCNNNNNNNGG	3 cut(s)	245, 533, 677
BsmFI	GGGAC	2 cut(s)	608, 644
BsmI	GAATGC	1 cut(s)	864
BsnI	GGCC	2 cut(s)	503, 964
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	481, 523, 841, 954
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	503, 964
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	84, 172, 525, 682
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	4 cut(s)	489, 518, 531, 849
BsrDI	GCAATG	1 cut(s)	957
BsrFI	RCCGGY	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	274, 684
BssMI	GATC	4 cut(s)	481, 523, 841, 954
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	2 cut(s)	274, 684
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	264, 353, 562
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	748
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	408, 641, 658
BstDSI	CCRYGG	1 cut(s)	684
BstEII	GGTNACC	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	4 cut(s)	25, 421, 577, 613
BstKTI	GATC	4 cut(s)	484, 526, 844, 957
BstMBI	GATC	4 cut(s)	481, 523, 841, 954
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 316, 509
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	1 cut(s)	640
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	671
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	503, 964
BtgI	CCRYGG	1 cut(s)	684
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	4 cut(s)	25, 421, 577, 613
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	312, 701, 934
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	83, 458, 536
Csp6I	GTAC	7 cut(s)	58, 354, 360, 552, 736, 775, 797
CspCI	CAANNNNNGTGG	2 cut(s)	819, 854
CviAII	CATG	8 cut(s)	16, 29, 129, 302, 637, 685, 821, 883
CviQI	GTAC	7 cut(s)	58, 354, 360, 552, 736, 775, 797
DdeI	CTNAG	3 cut(s)	408, 641, 658
DpnI	GATC	4 cut(s)	483, 525, 843, 956
DpnII	GATC	4 cut(s)	481, 523, 841, 954
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	274, 684
Eco47I	GGWCC	3 cut(s)	83, 458, 536
Eco91I	GGTNACC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	274, 684
ErhI	CCWWGG	2 cut(s)	274, 684
FaeI	CATG	8 cut(s)	19, 32, 132, 305, 640, 688, 824, 886
FaqI	GGGAC	2 cut(s)	608, 644
FatI	CATG	8 cut(s)	15, 28, 128, 301, 636, 684, 820, 882
FauNDI	CATATG	1 cut(s)	474
FbaI	TGATCA	1 cut(s)	954
FokI	GGATG	4 cut(s)	32, 428, 584, 620
FspBI	CTAG	4 cut(s)	167, 219, 587, 887
HaeIII	GGCC	2 cut(s)	503, 964
HapII	CCGG	4 cut(s)	215, 461, 581, 619
Hin1I	GRCGYC	1 cut(s)	748
Hin1II	CATG	8 cut(s)	19, 32, 132, 305, 640, 688, 824, 886
HindIII	AAGCTT	2 cut(s)	285, 510
HinfI	GANTC	2 cut(s)	194, 761
HpaII	CCGG	4 cut(s)	215, 461, 581, 619
HphI	GGTGA	2 cut(s)	58, 225
Hpy166II	GTNNAC	3 cut(s)	60, 93, 878
Hpy188III	TCNNGA	3 cut(s)	158, 410, 765
Hpy8I	GTNNAC	3 cut(s)	60, 93, 878
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	2 cut(s)	762, 816
HpyCH4III	ACNGT	3 cut(s)	264, 353, 562
HpyCH4IV	ACGT	2 cut(s)	748, 835
HpyCH4V	TGCA	5 cut(s)	28, 305, 310, 864, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 316, 509
HpyF3I	CTNAG	3 cut(s)	408, 641, 658
HpySE526I	ACGT	2 cut(s)	748, 835
Hsp92I	GRCGYC	1 cut(s)	748
Hsp92II	CATG	8 cut(s)	19, 32, 132, 305, 640, 688, 824, 886
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	954
Kzo9I	GATC	4 cut(s)	481, 523, 841, 954
LmnI	GCTCC	2 cut(s)	176, 583
LweI	GCATC	2 cut(s)	10, 637
MaeI	CTAG	4 cut(s)	167, 219, 587, 887
MaeII	ACGT	2 cut(s)	748, 835
MaeIII	GTNAC	4 cut(s)	7, 231, 574, 784
MalI	GATC	4 cut(s)	483, 525, 843, 956
MboI	GATC	4 cut(s)	481, 523, 841, 954
MboII	GAAGA	4 cut(s)	325, 400, 709, 883
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	671
MluCI	AATT	2 cut(s)	338, 753
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	1 cut(s)	518
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	5 cut(s)	242, 297, 623, 897, 970
MspI	CCGG	4 cut(s)	215, 461, 581, 619
MspR9I	CCNGG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	211, 316, 509
NaeI	GCCGGC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	684
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	4 cut(s)	481, 523, 841, 954
NgoMIV	GCCGGC	1 cut(s)	214
NlaIII	CATG	8 cut(s)	19, 32, 132, 305, 640, 688, 824, 886
NlaIV	GGNNCC	4 cut(s)	84, 172, 525, 682
NmuCI	GTSAC	2 cut(s)	231, 784
NspI	RCATGY	1 cut(s)	640
PctI	GAATGC	1 cut(s)	864
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	533
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	554
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	4 cut(s)	84, 172, 525, 682
PspPI	GGNCC	3 cut(s)	83, 458, 536
PspPPI	RGGWCCY	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	7 cut(s)	59, 355, 361, 553, 737, 776, 798
RsaNI	GTAC	7 cut(s)	58, 354, 360, 552, 736, 775, 797
SaqAI	TTAA	5 cut(s)	242, 297, 623, 897, 970
Sau3AI	GATC	4 cut(s)	481, 523, 841, 954
Sau96I	GGNCC	3 cut(s)	83, 458, 536
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	2 cut(s)	10, 637
SinI	GGWCC	3 cut(s)	83, 458, 536
SmlI	CTYRAG	1 cut(s)	853
SmoI	CTYRAG	1 cut(s)	853
Sse9I	AATT	2 cut(s)	338, 753
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	4 cut(s)	167, 219, 587, 887
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	2 cut(s)	274, 684
TaaI	ACNGT	3 cut(s)	264, 353, 562
TaiI	ACGT	2 cut(s)	751, 838
TaqI	TCGA	2 cut(s)	336, 751
TasI	AATT	2 cut(s)	338, 753
TatI	WGTACW	4 cut(s)	57, 359, 735, 774
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	5 cut(s)	242, 297, 623, 897, 970
Tru9I	TTAA	5 cut(s)	242, 297, 623, 897, 970
TscAI	CASTG	3 cut(s)	312, 701, 934
TseFI	GTSAC	2 cut(s)	231, 784
Tsp45I	GTSAC	2 cut(s)	231, 784
TspDTI	ATGAA	6 cut(s)	283, 297, 386, 395, 461, 930
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	3 cut(s)	312, 701, 934
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	3 cut(s)	83, 458, 536
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	2 cut(s)	338, 753
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XspI	CTAG	4 cut(s)	167, 219, 587, 887
ZraI	GACGTC	1 cut(s)	749
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.