Rmu_co8001252.1_g000001

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8001252.1
OG0003829
Physical Location & Seq
Reverse (-)
1 .. 488
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8001252.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
atgggccctctgcatgagattttggagatggtgaaaatagagtacacggactttgtggtgtttctgggtcctctgtggacggctttccttattggtattgtgattggttgggcatggaagccgaagtgggcaacatttggtcagggaaaactaggctcctctgtttctaaagtcttggattcgtctatgcctacttcgccggctaggtctgtgatgtcaccacccttaaaagggttctcatcagcaccgtgcttgttccaaggctatgaagcttggttcattaaccatgcagtgcagaagaggctttctccctcgcctatcgaatttgatgaccacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

6.82

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 230, 231
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 4, 5, 68
AsuHPI GGTGA 2 cut(s) 43, 210
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 96
BfaI CTAG 2 cut(s) 152, 204
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 4, 5, 68
BmiI GGNNCC 3 cut(s) 6, 69, 157
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 231
Bse118I RCCGGY 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 230, 231
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 230, 231
BsnI GGCC 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 3 cut(s) 6, 69, 157
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 196, 301
BstSLI GKGCMC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 4, 5, 68
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 14, 114, 287
CviJI RGCY 8 cut(s) 6, 83, 121, 156, 203, 264, 272, 304
CviKI_1 RGCY 8 cut(s) 6, 83, 121, 156, 203, 264, 272, 304
CviQI GTAC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 68
EcoO109I RGGNCCY 2 cut(s) 5, 68
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 17, 117, 290
FaiI YATR 5 cut(s) 15, 115, 188, 267, 288
FatI CATG 3 cut(s) 13, 113, 286
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 152, 204
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 17, 117, 290
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 43, 210
Hpy166II GTNNAC 2 cut(s) 45, 78
Hpy8I GTNNAC 2 cut(s) 45, 78
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 13, 290, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 301
Hsp92II CATG 3 cut(s) 17, 117, 290
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 50, 128, 213
MaeI CTAG 2 cut(s) 152, 204
MaeIII GTNAC 1 cut(s) 216
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 323
MnlI CCTC 5 cut(s) 18, 81, 169, 294, 322
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 2 cut(s) 227, 282
MspI CCGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 196, 301
NaeI GCCGGC 1 cut(s) 201
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 3 cut(s) 17, 117, 290
NlaIV GGNNCC 3 cut(s) 6, 69, 157
NmuCI GTSAC 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 6, 69, 157
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 68
PspPPI RGGWCCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 227, 282
Sau96I GGNCC 3 cut(s) 4, 5, 68
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 209, 274
SinI GGWCC 1 cut(s) 68
Sse9I AATT 1 cut(s) 323
SspMI CTAG 2 cut(s) 152, 204
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 323
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 227, 282
Tru9I TTAA 2 cut(s) 227, 282
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 268, 282
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 152, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.