Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002242.1

Orthogroup ID

OG0003829

Physical Location & Seq

Genomic Coordinates Reverse (-)

10692 .. 11956

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002242.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtttttgtcggggtttgtcgaagagggagagcttttgttagggcttgtcagagaaaagataggtcggggtctgtggaggagataaggttggggcttgtcaagaagagggagggagagttatgtcgaagaagagagaaggagagggtcgaggactcgaggtctgtcgaagaaggggtttctcaaggagataaggttgggttttgtcaattctttcgttcccaaaatgaagtatacgctaggtggcgtgtggaatcaagacacgacaatggccagctgactgcatgtgaagttcaactgtttcatcaagaggaaacgggaatcccatgggaaattgcaaaacttgctgtacgaaaaggaatgtgggatactgtaaagaacatagagtctggtttacgtgcttaccagaaagagagagcgttaggtggaataatttctcggcctgcctttctggctcagatcaacaccaaaataaatctagagtacctgaaagcctccgctggcactgaggattcatcacaaactgcagtggtgactacatctgacaaacctttcagtgggaagtgggaacatacagaatcttataattgttggtgggagtattctccttgcatgcagtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

8.84

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64720
fragaria_vesca	FvH4_5g10520 FvH4_5g10520 FvH4_7g32880
malus_domestica	MD00G1034500.v1.1 MD06G1122300.v1.1 MD07G1298700.v1.1
prunus_persica	Prupe.2G318500_v2.0.a1 Prupe.5G133300_v2.0.a1
pyrus_communis	pycom06g11380 pycom07g27110 pycom14g11410
rosa_chinensis	RchiOBHm_Chr1g0382831 RchiOBHm_Chr7g0187601
rosa_laevigata	RLG00000004767 RLG00000026156
rosa_multiflora	Rmu_co8001252.1_g000001 Rmu_sc0002242.1_g000004 Rmu_sc0002242.1_g000010 Rmu_sc0003389.1_g000011 Rmu_ssc0000110.1_g000016
rosa_roxburghii	Rroxscaffold_3G00267260 Rroxscaffold_4G00277860
rosa_rugosa	Rorug01G0436600 Rorug06G0482800
rosa_samantha	Rh1AG461600 Rh1BG418300 Rh1BG418600 Rh1CG432200 Rh1DG450400 Rh1DG450700 Rh7CG088300
rosa_wichuraiana	Rw0G002630 Rw1G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	351, 485
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	296
AhdI	GACNNNNNGTC	1 cut(s)	160
AluBI	AGCT	2 cut(s)	35, 277
AluI	AGCT	2 cut(s)	35, 277
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	271, 440
Asp700I	GAANNNNTTC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	273
BciVI	GTATCC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	240, 479
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	361
BglI	GCCNNNNNGGC	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 104, 134, 180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	470, 498
BseRI	GAGGAG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	273, 442
BsiHKCI	CYCGRG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	557
BsnI	GGCC	2 cut(s)	273, 442
BsoBI	CYCGRG	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	459
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	2 cut(s)	273, 442
BspCNI	CTCAG	2 cut(s)	469, 499
BspMAI	CTGCAG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	459
BssNAI	GTATAC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	326
Bst1107I	GTATAC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	300, 373
Bst6I	CTCTTC	3 cut(s)	19, 101, 127
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	275, 444, 502, 614
BstDEI	CTNAG	2 cut(s)	456, 507
BstDSI	CCRYGG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 452
BstNSI	RCATGY	2 cut(s)	288, 616
BstSFI	CTRYAG	1 cut(s)	525
BstZ17I	GTATAC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	273, 442
BtgI	CCRYGG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	504, 534, 562
Cac8I	GCNNGC	4 cut(s)	275, 444, 502, 614
Csp6I	GTAC	2 cut(s)	350, 484
CviAII	CATG	3 cut(s)	285, 327, 613
CviJI	RGCY	8 cut(s)	35, 47, 97, 273, 277, 442, 455, 494
CviKI_1	RGCY	8 cut(s)	35, 47, 97, 273, 277, 442, 455, 494
CviQI	GTAC	2 cut(s)	350, 484
DdeI	CTNAG	2 cut(s)	456, 507
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	19, 101, 127
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	3 cut(s)	19, 101, 127
Eco130I	CCWWGG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	288, 330, 616
FaiI	YATR	8 cut(s)	124, 235, 286, 328, 383, 573, 585, 614
FatI	CATG	3 cut(s)	284, 326, 612
FblI	GTMKAC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	240, 479
HaeIII	GGCC	2 cut(s)	273, 442
Hin1II	CATG	3 cut(s)	288, 330, 616
HinfI	GANTC	6 cut(s)	155, 254, 321, 386, 512, 578
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	235, 395
Hpy188I	TCNGA	3 cut(s)	54, 459, 544
Hpy188III	TCNNGA	5 cut(s)	103, 258, 308, 479, 621
Hpy8I	GTNNAC	2 cut(s)	235, 395
HpyAV	CCTTC	2 cut(s)	133, 167
HpyCH4III	ACNGT	2 cut(s)	300, 373
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	284, 338, 527, 612, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 452
HpyF3I	CTNAG	2 cut(s)	456, 507
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	288, 330, 616
Kzo9I	GATC	1 cut(s)	459
LpnPI	CCDG	7 cut(s)	287, 375, 419, 437, 456, 486, 500
MaeI	CTAG	2 cut(s)	240, 479
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	5 cut(s)	36, 118, 141, 144, 182
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	4 cut(s)	209, 333, 432, 586
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	149, 395
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	277, 500
MwoI	GCNNNNNNNGC	2 cut(s)	344, 452
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	3 cut(s)	288, 330, 616
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	2 cut(s)	288, 616
PaeI	GCATGC	1 cut(s)	616
PaeR7I	CTCGAG	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	254, 321, 512, 578
PleI	GAGTC	2 cut(s)	149, 394
PpsI	GAGTC	2 cut(s)	149, 394
Ppu21I	YACGTR	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	351, 485
RsaNI	GTAC	2 cut(s)	350, 484
RseI	CAYNNNNRTG	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	149, 395
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	157, 183
SmoI	CTYRAG	2 cut(s)	157, 183
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	4 cut(s)	209, 333, 432, 586
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	2 cut(s)	240, 479
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	300, 373
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	5 cut(s)	22, 127, 150, 158, 168
TasI	AATT	4 cut(s)	209, 333, 432, 586
TfiI	GAWTC	4 cut(s)	254, 321, 512, 578
TscAI	CASTG	3 cut(s)	511, 534, 562
TseFI	GTSAC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	243, 293, 504
TspRI	CASTG	3 cut(s)	511, 534, 562
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	2 cut(s)	288, 616
XhoI	CTCGAG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	2 cut(s)	240, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.