Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

17899359 .. 17902353

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGTATGGAAGCTTATGAAATGTTTTTGAATGTATGTTCAGATTATGTCATGTTATTGTATTTTTTTTCTTTGGTCAACAGAGTTACTGTATTGTTTGATGTTGAGAAAGGGGATAGGCCATTACTTGTGGCCTTAGCTGAGAGATGGTGGGACACTACCCACACATTCCACTTCGATGAAGTTGGAGAGATGACAATGACCCCCATGGACTTCGCAGCAATCACAGGATTGCGTGTTGGTGGGAAGCGATTAACGTACGACTTGGACATTTACAAAAATAAGAATAAGGTGGTGAAATTGTTTGGGAAACCAATTGCAGACCTACTGGCAGGGGAAAGGAGAGTGCCGTATGAAAGCCTTTGCACTCCGTACTGGAAGAAGAATCCGAAAGATGATAAAGAAGCAGACCAAATTGCAAGGGCATTTATACTGTGCTTGATTGGCTCCTCATTCCTAAATGACAAGAGCCAATACGTGAGTATGCACTACGCCCCTTGTCTAGAAATTGTCTCAGACATTGGTAAATATGACTGGGGCGGTGCGGCTTTGGCTTGCTTGTATAGATCACTGGATTCTTGTTCTAGGGGCAGGTCATCAAGCATGGGCGGGTATTGGAGGGCATGGGAGGTATGGGCTTGCGAGTATCTAAAGCCGTTTGCTTTATCAAGGCCCAGTAGAACAGTGAACACGTGGCCCCGAACATTGAGGTGGGTTGGTGTAAAATCAAAGCGGGACTTGCAACATCACTTGGAACATTTTAGGGTGATGATGCGACATCTAACAAATGATCAGGTTAATTGGAACCCATGGGGGACCAATGAATCCGACATGCCGGAAGCCGTCAAAAAGAGCGTGCCGGCAACCCGTAAACGAATCCTACTTGAGGGACCAGCTGGTTCAGCCTGGTTTTTAGGAGAGCGAGTCGCTATGCAAAGTAGAAAAGGAAAGACAAAAATTGTGATACCAGAAGAGCATGAAGAAGATGAGGAAGAGGAAGATGAAGAGGAAGATGAAGACGATGCTTGGATCAAAGAGACAGAGGTTGGGGATGAGGATGAGGAAGCCGATGAGGACGAGGTTGGGGATGAGGATGAGGAAGCCGATGAGGACGGGGCCGTAGCTAAGGGTAATCCGGATGCAGAACAACACTCCACAGACCAAAAACGCAAAGTTGAGAAAAGTCTTCATTCACGTACCCCAAAGAGAAAGAAAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009888 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

408

Amino Acids

46.87

Weight (kDa)

5.11

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	1135
AciI	CCGC	4 cut(s)	540, 545, 609, 733
AclWI	GGATC	1 cut(s)	1037
AcvI	CACGTG	1 cut(s)	693
AfaI	GTAC	3 cut(s)	260, 374, 1198
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	905
AluBI	AGCT	4 cut(s)	14, 140, 896, 1124
AluI	AGCT	4 cut(s)	14, 140, 896, 1124
Alw26I	GTCTC	2 cut(s)	517, 1031
AlwI	GGATC	1 cut(s)	1037
Aor13HI	TCCGGA	1 cut(s)	1135
AoxI	GGCC	5 cut(s)	119, 132, 671, 695, 1116
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	5 cut(s)	672, 696, 816, 890, 1116
AsuHPI	GGTGA	2 cut(s)	307, 778
AvaII	GGWCC	2 cut(s)	816, 890
BbrPI	CACGTG	1 cut(s)	693
BbsI	GAAGAC	2 cut(s)	1023, 1178
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	4 cut(s)	334, 640, 827, 1103
BciT130I	CCWGG	1 cut(s)	907
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	517, 1031
BfaI	CTAG	2 cut(s)	503, 585
BfuAI	ACCTGC	1 cut(s)	582
BisI	GCNGC	2 cut(s)	219, 546
BlsI	GCNGC	2 cut(s)	220, 547
Bme1390I	CCNGG	1 cut(s)	907
Bme18I	GGWCC	2 cut(s)	816, 890
BmgT120I	GGNCC	5 cut(s)	672, 696, 816, 890, 1116
BmiI	GGNNCC	6 cut(s)	448, 698, 806, 817, 891, 1117
BmrFI	CCNGG	1 cut(s)	907
BmrI	ACTGGG	2 cut(s)	544, 669
BmsI	GCATC	3 cut(s)	762, 1012, 1129
BmuI	ACTGGG	2 cut(s)	544, 669
BpiI	GAAGAC	2 cut(s)	1023, 1178
Bpu10I	CCTNAGC	2 cut(s)	136, 1125
BpuEI	CTTGAG	1 cut(s)	905
BsaAI	YACGTR	3 cut(s)	478, 693, 1196
BsaJI	CCNNGG	2 cut(s)	207, 809
BsaWI	WCCGGW	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	5 cut(s)	333, 380, 539, 576, 675
BseAI	TCCGGA	1 cut(s)	1135
BseBI	CCWGG	1 cut(s)	907
BseDI	CCNNGG	2 cut(s)	207, 809
BseGI	GGATG	5 cut(s)	1057, 1063, 1093, 1099, 1144
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	2 cut(s)	132, 528
BseNI	ACTGG	5 cut(s)	333, 380, 539, 576, 675
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	5 cut(s)	121, 134, 673, 697, 1118
BsiSI	CCGG	3 cut(s)	836, 860, 1136
BsiWI	CGTACG	1 cut(s)	258
BslFI	GGGAC	4 cut(s)	167, 749, 829, 903
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	2 cut(s)	517, 1031
BsmFI	GGGAC	4 cut(s)	167, 749, 829, 903
BsnI	GGCC	5 cut(s)	121, 134, 673, 697, 1118
Bsp13I	TCCGGA	1 cut(s)	1135
Bsp143I	GATC	3 cut(s)	566, 790, 1029
Bsp19I	CCATGG	2 cut(s)	207, 809
BspACI	CCGC	4 cut(s)	540, 545, 609, 733
BspANI	GGCC	5 cut(s)	121, 134, 673, 697, 1118
BspCNI	CTCAG	2 cut(s)	133, 527
BspEI	TCCGGA	1 cut(s)	1135
BspLI	GGNNCC	6 cut(s)	448, 698, 806, 817, 891, 1117
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	1037
BspQI	GCTCTTC	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	859
BsrI	ACTGG	5 cut(s)	333, 380, 539, 576, 675
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	2 cut(s)	207, 809
BssMI	GATC	3 cut(s)	566, 790, 1029
BssT1I	CCWWGG	2 cut(s)	207, 809
Bst2UI	CCWGG	1 cut(s)	907
Bst4CI	ACNGT	3 cut(s)	91, 435, 685
Bst6I	CTCTTC	3 cut(s)	966, 987, 999
BstBAI	YACGTR	3 cut(s)	478, 693, 1196
BstC8I	GCNNGC	4 cut(s)	556, 640, 857, 861
BstDEI	CTNAG	4 cut(s)	136, 141, 514, 1125
BstDSI	CCRYGG	2 cut(s)	207, 809
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	5 cut(s)	1057, 1063, 1093, 1099, 1144
BstKTI	GATC	3 cut(s)	569, 793, 1032
BstMAI	GTCTC	2 cut(s)	517, 1031
BstMBI	GATC	3 cut(s)	566, 790, 1029
BstMWI	GCNNNNNNNGC	4 cut(s)	444, 551, 739, 902
BstNI	CCWGG	1 cut(s)	907
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	2 cut(s)	1023, 1178
BsuRI	GGCC	5 cut(s)	121, 134, 673, 697, 1118
BtgI	CCRYGG	2 cut(s)	207, 809
BtsCI	GGATG	5 cut(s)	1057, 1063, 1093, 1099, 1144
BtsIMutI	CAGTG	2 cut(s)	569, 690
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	4 cut(s)	556, 640, 857, 861
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	5 cut(s)	672, 696, 816, 890, 1116
Csp6I	GTAC	3 cut(s)	259, 373, 1197
CviAII	CATG	7 cut(s)	52, 208, 604, 624, 810, 832, 977
CviQI	GTAC	3 cut(s)	259, 373, 1197
DdeI	CTNAG	4 cut(s)	136, 141, 514, 1125
DpnI	GATC	3 cut(s)	568, 792, 1031
DpnII	GATC	3 cut(s)	566, 790, 1029
Eam1104I	CTCTTC	3 cut(s)	966, 987, 999
EarI	CTCTTC	3 cut(s)	966, 987, 999
Eco130I	CCWWGG	2 cut(s)	207, 809
Eco47I	GGWCC	2 cut(s)	816, 890
Eco72I	CACGTG	1 cut(s)	693
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	905
EcoT14I	CCWWGG	2 cut(s)	207, 809
ErhI	CCWWGG	2 cut(s)	207, 809
FaeI	CATG	7 cut(s)	55, 211, 607, 627, 813, 835, 980
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	4 cut(s)	167, 749, 829, 903
FatI	CATG	7 cut(s)	51, 207, 603, 623, 809, 831, 976
FauI	CCCGC	2 cut(s)	602, 726
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	219, 546
FokI	GGATG	5 cut(s)	1064, 1070, 1100, 1106, 1151
Fsp4HI	GCNGC	2 cut(s)	219, 546
FspBI	CTAG	2 cut(s)	503, 585
GluI	GCNGC	2 cut(s)	219, 546
HaeIII	GGCC	5 cut(s)	121, 134, 673, 697, 1118
HapII	CCGG	3 cut(s)	836, 860, 1136
Hin1II	CATG	7 cut(s)	55, 211, 607, 627, 813, 835, 980
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	5 cut(s)	385, 575, 824, 876, 924
HpaII	CCGG	3 cut(s)	836, 860, 1136
HphI	GGTGA	2 cut(s)	307, 778
Hpy166II	GTNNAC	3 cut(s)	79, 688, 872
Hpy188I	TCNGA	4 cut(s)	43, 390, 517, 829
Hpy188III	TCNNGA	2 cut(s)	503, 1136
Hpy8I	GTNNAC	3 cut(s)	79, 688, 872
HpyCH4III	ACNGT	3 cut(s)	91, 435, 685
HpyCH4IV	ACGT	4 cut(s)	257, 477, 692, 1195
HpyCH4V	TGCA	7 cut(s)	320, 366, 419, 487, 742, 934, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	444, 551, 739, 902
HpyF3I	CTNAG	4 cut(s)	136, 141, 514, 1125
HpySE526I	ACGT	4 cut(s)	257, 477, 692, 1195
Hsp92II	CATG	7 cut(s)	55, 211, 607, 627, 813, 835, 980
Kpn2I	TCCGGA	1 cut(s)	1135
KroI	GCCGGC	1 cut(s)	859
KroNI	GCCGGC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	566, 790, 1029
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	3 cut(s)	762, 1012, 1129
MaeI	CTAG	2 cut(s)	503, 585
MaeII	ACGT	4 cut(s)	257, 477, 692, 1195
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	568, 792, 1031
MboI	GATC	3 cut(s)	566, 790, 1029
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	6 cut(s)	299, 315, 414, 507, 799, 957
MlyI	GAGTC	1 cut(s)	933
MmeI	TCCRAC	2 cut(s)	166, 852
MroI	TCCGGA	1 cut(s)	1135
MroNI	GCCGGC	1 cut(s)	859
MseI	TTAA	2 cut(s)	254, 798
MslI	CAYNNNNRTG	2 cut(s)	177, 709
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	3 cut(s)	836, 860, 1136
MspR9I	CCNGG	1 cut(s)	907
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	907
MwoI	GCNNNNNNNGC	4 cut(s)	444, 551, 739, 902
NaeI	GCCGGC	1 cut(s)	861
NcoI	CCATGG	2 cut(s)	207, 809
NdeII	GATC	3 cut(s)	566, 790, 1029
NgoMIV	GCCGGC	1 cut(s)	859
NlaIII	CATG	7 cut(s)	55, 211, 607, 627, 813, 835, 980
NlaIV	GGNNCC	6 cut(s)	448, 698, 806, 817, 891, 1117
NspI	RCATGY	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	966
PdiI	GCCGGC	1 cut(s)	861
PfeI	GAWTC	4 cut(s)	385, 575, 824, 876
Pfl23II	CGTACG	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	220, 547
PleI	GAGTC	1 cut(s)	932
PmaCI	CACGTG	1 cut(s)	693
PmlI	CACGTG	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	932
Ppu21I	YACGTR	3 cut(s)	478, 693, 1196
Psp6I	CCWGG	1 cut(s)	905
PspCI	CACGTG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	905
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	6 cut(s)	448, 698, 806, 817, 891, 1117
PspPI	GGNCC	5 cut(s)	672, 696, 816, 890, 1116
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	3 cut(s)	260, 374, 1198
RsaNI	GTAC	3 cut(s)	259, 373, 1197
RseI	CAYNNNNRTG	2 cut(s)	177, 709
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	2 cut(s)	254, 798
SatI	GCNGC	2 cut(s)	219, 546
Sau3AI	GATC	3 cut(s)	566, 790, 1029
Sau96I	GGNCC	5 cut(s)	672, 696, 816, 890, 1116
SchI	GAGTC	1 cut(s)	933
ScrFI	CCNGG	1 cut(s)	907
SfaNI	GCATC	3 cut(s)	762, 1012, 1129
SinI	GGWCC	2 cut(s)	816, 890
SmiMI	CAYNNNNRTG	2 cut(s)	177, 709
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	299, 315, 414, 507, 799, 957
SsiI	CCGC	4 cut(s)	540, 545, 609, 733
SspMI	CTAG	2 cut(s)	503, 585
StyD4I	CCNGG	1 cut(s)	905
StyI	CCWWGG	2 cut(s)	207, 809
TaaI	ACNGT	3 cut(s)	91, 435, 685
TaiI	ACGT	4 cut(s)	260, 480, 695, 1198
TaqI	TCGA	1 cut(s)	177
TasI	AATT	6 cut(s)	299, 315, 414, 507, 799, 957
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	4 cut(s)	385, 575, 824, 876
Tru1I	TTAA	2 cut(s)	254, 798
Tru9I	TTAA	2 cut(s)	254, 798
TscAI	CASTG	2 cut(s)	576, 690
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	8 cut(s)	33, 195, 369, 837, 993, 1017, 1029, 1178
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	576, 690
VpaK11BI	GGWCC	2 cut(s)	816, 890
XagI	CCTNNNNNAGG	1 cut(s)	884
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	835
XspI	CTAG	2 cut(s)	503, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.