Rh6CG003300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002281
Physical Location & Seq
Forward (+)
506931 .. 510422
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG003300.1

Sequence Viewer

Length: 1422 bp
ATGAAAATTTACAATAAACCCAACAAGATGAAAACGTTGGTTGGGGAGCCACTGGCAAACTTGGGAAAGAAAAGAGTGACTTATCCCTGGATACAGTACTTGTATCAAAACTATGAATGTTCTACCGCTAAAGAAGAGGAAATTTTAACACGAGTATTCATCCTCGTGCTTCTTGGGTCAACAATTTTTCGCGATAAAGGTTATAGGGTTTACTTGTATTATCTCCCGAGTTTGAAGAAGATCAGCAGTATTGCTAAATATAATTGGGGAGGAAGTGCCCTTGCTTTTCTGTATTGCAATATGGATGCCCTTTGTCGAGGCTTGACTAAAAGTTCCGGCGGATACTCTAAAGCGTGGGAGATCTGGGCATGCGAATACATACCGTCTTTGACCCGAGCAAGTACTGGTGCCAACACATTCCCAAGGGCACTATGTTGGACTCCACAGAATGTGGTATCCCATAGTCTTGCAGAGTATAGGGTGATTCTCAAAGACCTCAAGTTTGAACAGATTAATTTCTCACCCTGGGGTCCGGATGAGGAACTTCCATCTTATTGTGTATCTAGCCTGTTGTCGAATAAGAAGAGAATCTTGTTAGAGAGTCTCGCTGGCAGAGCATGCAACAATGTGCCCTCAGATGAAGAAATTAAACTTGGATTTGATGGATTTGATGCAACTCAATACTTAGATGACAAGGCTGCAATGACTTACCAAGATTTTCGGGAGCAGTTTCTGTCATACAACTACTCCACCGAGCAAGAGGCAAGCAGATGTGGTGGTGGTGATGAAGATAATCTTCTACAGCTCCCTAATGATGATCAGGTTGTGGGTGTTCGACTTCCAGCTGACATTGATTCAGTGAGTGCATCTACAGCAGCCATGTTCTTGCAAGCGTTTGGTGATACTATGAACCTTCTGAAAAAAAAGTTACAAAAGGACGTTGCTGGATACGATGACGATGAAGACTACGAAGAAGAGGATGTTGGCAATCAACAAAGAGGAGAATTGAATAAGCAAATCAAGAGCTTTCATAAGGAGGATGTTGACAACATTGTTATTGTACTGAGTGATGATGATGACGAGGAGGAGGAGGAGGAGAAGGATGCTAAAGAACATGATGATAATGATGATGGTGATGATGATGATGAGGGGAAGGAGTCCCAGGATGGTCATCAAGAAAATGAGGACAAGGATATTAGCGAACATCAGGGGCATGGCGATGATGAGGCTGACGAGGAGACTCACGAAAATGGTGAGGAAAGTGAGGAGGAGGAAGATGACAGTTCTGATGAGGAATCAGATTCTTGTTCCGCGCTGGAAAAGAAGCGCAAGAAATGTGAAGATCCTCCCTACCAAGGAAATGATCCTAAAAGGGCAAAGACTCCTTTCTTTTTTGGTGCCCCTGGACCGAGAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

473

Amino Acids

53.61

Weight (kDa)

4.45

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 21 - 185 4.6e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 407, 1397
AccII CGCG 2 cut(s) 192, 1313
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 3 cut(s) 126, 339, 1311
AclI AACGTT 1 cut(s) 35
AclWI GGATC 2 cut(s) 1337, 1358
AcsI RAATTY 2 cut(s) 6, 141
AfaI GTAC 3 cut(s) 98, 403, 1062
AfiI CCNNNNNNNGG 1 cut(s) 1355
AgsI TTSAA 3 cut(s) 235, 506, 1009
AjnI CCWGG 4 cut(s) 86, 524, 1161, 1402
AjuI GAANNNNNNNTTGG 4 cut(s) 636, 668, 966, 998
AluBI AGCT 3 cut(s) 805, 845, 1026
AluI AGCT 3 cut(s) 805, 845, 1026
Alw26I GTCTC 2 cut(s) 608, 1232
AlwI GGATC 2 cut(s) 1337, 1358
AlwNI CAGNNNCTG 1 cut(s) 733
Ama87I CYCGRG 2 cut(s) 226, 393
Aor13HI TCCGGA 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 698, 875
ApoI RAATTY 2 cut(s) 6, 141
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 2 cut(s) 1315, 1329
AspS9I GGNCC 2 cut(s) 530, 1406
AsuHPI GGTGA 6 cut(s) 493, 513, 794, 911, 1145, 1265
AvaI CYCGRG 2 cut(s) 226, 393
AvaII GGWCC 2 cut(s) 530, 1406
BaeGI GKGCMC 4 cut(s) 280, 430, 633, 1402
BanI GGYRCC 2 cut(s) 407, 1397
BauI CACGAG 2 cut(s) 150, 164
BbsI GAAGAC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 685, 887
BccI CCATC 4 cut(s) 556, 656, 1124, 1160
BciT130I CCWGG 4 cut(s) 88, 526, 1163, 1404
BciVI GTATCC 4 cut(s) 84, 335, 466, 941
BclI TGATCA 1 cut(s) 817
BcoDI GTCTC 2 cut(s) 608, 1232
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 2 cut(s) 800, 870
BfuI GTATCC 4 cut(s) 84, 335, 466, 941
BglII AGATCT 1 cut(s) 360
BisI GCNGC 2 cut(s) 699, 876
BlsI GCNGC 2 cut(s) 700, 877
BmcAI AGTACT 2 cut(s) 98, 403
Bme1390I CCNGG 4 cut(s) 88, 526, 1163, 1404
Bme18I GGWCC 2 cut(s) 530, 1406
BmeT110I CYCGRG 2 cut(s) 226, 393
BmgT120I GGNCC 2 cut(s) 530, 1406
BmiI GGNNCC 4 cut(s) 48, 409, 531, 1399
BmrFI CCNGG 4 cut(s) 88, 526, 1163, 1404
BmsI GCATC 4 cut(s) 295, 661, 875, 1093
BpiI GAAGAC 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 1170
BsaJI CCNNGG 7 cut(s) 86, 422, 524, 525, 1161, 1354, 1402
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 1355
Bse1I ACTGG 2 cut(s) 57, 409
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 1170
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 4 cut(s) 88, 526, 1163, 1404
BseDI CCNNGG 7 cut(s) 86, 422, 524, 525, 1161, 1354, 1402
BseGI GGATG 7 cut(s) 159, 310, 541, 985, 1045, 1108, 1171
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 1 cut(s) 1355
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 2 cut(s) 648, 1055
BseNI ACTGG 2 cut(s) 57, 409
BseRI GAGGAG 9 cut(s) 1014, 1097, 1100, 1103, 1106, 1109, 1250, 1280, 1283
BseSI GKGCMC 4 cut(s) 280, 430, 633, 1402
BseXI GCAGC 2 cut(s) 685, 887
Bsh1236I CGCG 2 cut(s) 192, 1313
BshNI GGYRCC 2 cut(s) 407, 1397
BsiHKCI CYCGRG 2 cut(s) 226, 393
BsiSI CCGG 2 cut(s) 336, 533
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 1 cut(s) 1355
BsmAI GTCTC 2 cut(s) 608, 1232
BsmFI GGGAC 1 cut(s) 1144
BsoBI CYCGRG 2 cut(s) 226, 393
Bsp1286I GDGCHC 4 cut(s) 280, 430, 633, 1402
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 5 cut(s) 240, 360, 817, 1342, 1363
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 3 cut(s) 126, 339, 1311
BspCNI CTCAG 2 cut(s) 647, 1056
BspEI TCCGGA 1 cut(s) 532
BspFNI CGCG 2 cut(s) 192, 1313
BspLI GGNNCC 4 cut(s) 48, 409, 531, 1399
BspPI GGATC 2 cut(s) 1337, 1358
BspT107I GGYRCC 2 cut(s) 407, 1397
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 2 cut(s) 57, 409
BssECI CCNNGG 7 cut(s) 86, 422, 524, 525, 1161, 1354, 1402
BssMI GATC 5 cut(s) 240, 360, 817, 1342, 1363
BssSI CACGAG 2 cut(s) 150, 164
BssT1I CCWWGG 2 cut(s) 422, 1354
Bst2BI CACGAG 2 cut(s) 150, 164
Bst2UI CCWGG 4 cut(s) 88, 526, 1163, 1404
Bst4CI ACNGT 3 cut(s) 96, 384, 1283
Bst6I CTCTTC 3 cut(s) 129, 578, 969
BstAPI GCANNNNNTGC 1 cut(s) 618
BstC8I GCNNGC 5 cut(s) 370, 610, 619, 766, 891
BstDEI CTNAG 3 cut(s) 634, 685, 1064
BstF5I GGATG 7 cut(s) 159, 310, 541, 985, 1045, 1108, 1171
BstFNI CGCG 2 cut(s) 192, 1313
BstHHI GCGC 2 cut(s) 1315, 1329
BstKTI GATC 5 cut(s) 243, 363, 820, 1345, 1366
BstMAI GTCTC 2 cut(s) 608, 1232
BstMBI GATC 5 cut(s) 240, 360, 817, 1342, 1363
BstMWI GCNNNNNNNGC 3 cut(s) 614, 618, 872
BstNI CCWGG 4 cut(s) 88, 526, 1163, 1404
BstNSI RCATGY 2 cut(s) 372, 621
BstSCI CCNGG 4 cut(s) 86, 524, 1161, 1402
BstSFI CTRYAG 2 cut(s) 800, 870
BstSLI GKGCMC 4 cut(s) 280, 430, 633, 1402
BstUI CGCG 2 cut(s) 192, 1313
BstV1I GCAGC 2 cut(s) 685, 887
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 2 cut(s) 360, 1342
BstYI RGATCY 2 cut(s) 360, 1342
BsuI GTATCC 4 cut(s) 84, 335, 466, 941
BtgZI GCGATG 1 cut(s) 1233
BtsCI GGATG 7 cut(s) 159, 310, 541, 985, 1045, 1108, 1171
BtsIMutI CAGTG 2 cut(s) 50, 864
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 5 cut(s) 370, 610, 619, 766, 891
CaiI CAGNNNCTG 1 cut(s) 733
CfoI GCGC 2 cut(s) 1315, 1329
Cfr13I GGNCC 2 cut(s) 530, 1406
Csp6I GTAC 3 cut(s) 97, 402, 1061
CviAII CATG 5 cut(s) 369, 618, 880, 1115, 1214
CviJI RGCY 9 cut(s) 49, 321, 567, 698, 805, 845, 878, 1026, 1229
CviKI_1 RGCY 9 cut(s) 49, 321, 567, 698, 805, 845, 878, 1026, 1229
CviQI GTAC 3 cut(s) 97, 402, 1061
DdeI CTNAG 3 cut(s) 634, 685, 1064
DpnI GATC 5 cut(s) 242, 362, 819, 1344, 1365
DpnII GATC 5 cut(s) 240, 360, 817, 1342, 1363
Eam1104I CTCTTC 3 cut(s) 129, 578, 969
EarI CTCTTC 3 cut(s) 129, 578, 969
EciI GGCGGA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 422, 1354
Eco47I GGWCC 2 cut(s) 530, 1406
Eco88I CYCGRG 2 cut(s) 226, 393
EcoRII CCWGG 4 cut(s) 86, 524, 1161, 1402
EcoT14I CCWWGG 2 cut(s) 422, 1354
ErhI CCWWGG 2 cut(s) 422, 1354
FaeI CATG 5 cut(s) 372, 621, 883, 1118, 1217
FalI AAGNNNNNCTT 6 cut(s) 64, 96, 575, 607, 780, 812
FaqI GGGAC 1 cut(s) 1144
FatI CATG 5 cut(s) 368, 617, 879, 1114, 1213
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 2 cut(s) 699, 876
FokI GGATG 7 cut(s) 146, 317, 548, 992, 1052, 1115, 1178
Fsp4HI GCNGC 2 cut(s) 699, 876
FspBI CTAG 1 cut(s) 564
GlaI GCGC 2 cut(s) 1314, 1328
GluI GCNGC 2 cut(s) 699, 876
HapII CCGG 2 cut(s) 336, 533
HhaI GCGC 2 cut(s) 1315, 1329
Hin1II CATG 5 cut(s) 372, 621, 883, 1118, 1217
Hin6I GCGC 2 cut(s) 1313, 1327
HinP1I GCGC 2 cut(s) 1313, 1327
HincII GTYRAC 2 cut(s) 180, 1045
HindII GTYRAC 2 cut(s) 180, 1045
HpaII CCGG 2 cut(s) 336, 533
HphI GGTGA 6 cut(s) 493, 513, 794, 911, 1145, 1265
Hpy166II GTNNAC 3 cut(s) 180, 211, 1045
Hpy188I TCNGA 4 cut(s) 637, 918, 1288, 1300
Hpy188III TCNNGA 7 cut(s) 191, 226, 533, 722, 1021, 1175, 1244
Hpy8I GTNNAC 3 cut(s) 180, 211, 1045
HpyAV CCTTC 3 cut(s) 923, 1093, 1147
HpyCH4III ACNGT 3 cut(s) 96, 384, 1283
HpyCH4IV ACGT 2 cut(s) 35, 939
HpyCH4V TGCA 7 cut(s) 297, 470, 621, 674, 701, 866, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 614, 618, 872
HpyF3I CTNAG 3 cut(s) 634, 685, 1064
HpySE526I ACGT 2 cut(s) 35, 939
Hsp92II CATG 5 cut(s) 372, 621, 883, 1118, 1217
HspAI GCGC 2 cut(s) 1313, 1327
Kpn2I TCCGGA 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 5 cut(s) 240, 360, 817, 1342, 1363
LmnI GCTCC 3 cut(s) 46, 724, 810
Lsp1109I GCAGC 2 cut(s) 685, 887
LweI GCATC 4 cut(s) 295, 661, 875, 1093
MaeI CTAG 1 cut(s) 564
MaeII ACGT 2 cut(s) 35, 939
MaeIII GTNAC 2 cut(s) 76, 927
MalI GATC 5 cut(s) 242, 362, 819, 1344, 1365
MboI GATC 5 cut(s) 240, 360, 817, 1342, 1363
MflI RGATCY 2 cut(s) 360, 1342
MhlI GDGCHC 4 cut(s) 280, 430, 633, 1402
MluCI AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 1004
MlyI GAGTC 5 cut(s) 433, 610, 1166, 1234, 1375
MmeI TCCRAC 1 cut(s) 416
MroI TCCGGA 1 cut(s) 532
MseI TTAA 4 cut(s) 146, 513, 648, 1420
MslI CAYNNNNRTG 3 cut(s) 164, 1218, 1248
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 336, 533
MspR9I CCNGG 4 cut(s) 88, 526, 1163, 1404
MvaI CCWGG 4 cut(s) 88, 526, 1163, 1404
MvnI CGCG 2 cut(s) 192, 1313
MwoI GCNNNNNNNGC 3 cut(s) 614, 618, 872
NdeII GATC 5 cut(s) 240, 360, 817, 1342, 1363
NlaIII CATG 5 cut(s) 372, 621, 883, 1118, 1217
NlaIV GGNNCC 4 cut(s) 48, 409, 531, 1399
NmuCI GTSAC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 192
NspI RCATGY 2 cut(s) 372, 621
PaeI GCATGC 2 cut(s) 372, 621
PasI CCCWGGG 1 cut(s) 525
PfeI GAWTC 5 cut(s) 484, 588, 854, 1295, 1301
PkrI GCNGC 2 cut(s) 700, 877
PleI GAGTC 5 cut(s) 433, 609, 1165, 1234, 1375
PpsI GAGTC 5 cut(s) 433, 609, 1165, 1234, 1375
PshBI ATTAAT 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 35
Psp6I CCWGG 4 cut(s) 86, 524, 1161, 1402
PspGI CCWGG 4 cut(s) 86, 524, 1161, 1402
PspN4I GGNNCC 4 cut(s) 48, 409, 531, 1399
PspPI GGNCC 2 cut(s) 530, 1406
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 360, 1342
PvuII CAGCTG 1 cut(s) 845
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 3 cut(s) 98, 403, 1062
RsaNI GTAC 3 cut(s) 97, 402, 1061
RseI CAYNNNNRTG 3 cut(s) 164, 1218, 1248
SaqAI TTAA 4 cut(s) 146, 513, 648, 1420
SatI GCNGC 2 cut(s) 699, 876
Sau3AI GATC 5 cut(s) 240, 360, 817, 1342, 1363
Sau96I GGNCC 2 cut(s) 530, 1406
ScaI AGTACT 2 cut(s) 98, 403
SchI GAGTC 5 cut(s) 433, 610, 1166, 1234, 1375
ScrFI CCNGG 4 cut(s) 88, 526, 1163, 1404
SduI GDGCHC 4 cut(s) 280, 430, 633, 1402
SetI ASST 9 cut(s) 38, 202, 498, 807, 825, 847, 915, 942, 1028
SfaNI GCATC 4 cut(s) 295, 661, 875, 1093
SfcI CTRYAG 2 cut(s) 800, 870
SinI GGWCC 2 cut(s) 530, 1406
SmiMI CAYNNNNRTG 3 cut(s) 164, 1218, 1248
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SphI GCATGC 2 cut(s) 372, 621
Sse9I AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 1004
SsiI CCGC 3 cut(s) 126, 339, 1311
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 4 cut(s) 86, 524, 1161, 1402
StyI CCWWGG 2 cut(s) 422, 1354
TaaI ACNGT 3 cut(s) 96, 384, 1283
TaiI ACGT 2 cut(s) 38, 942
TaqI TCGA 3 cut(s) 316, 575, 835
TasI AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 1004
TatI WGTACW 3 cut(s) 96, 401, 1060
TfiI GAWTC 5 cut(s) 484, 588, 854, 1295, 1301
Tru1I TTAA 4 cut(s) 146, 513, 648, 1420
Tru9I TTAA 4 cut(s) 146, 513, 648, 1420
TscAI CASTG 2 cut(s) 57, 864
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 698, 875
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 9 cut(s) 17, 44, 129, 148, 654, 801, 923, 975, 1019
TspRI CASTG 2 cut(s) 57, 864
VpaK11BI GGWCC 2 cut(s) 530, 1406
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 2 cut(s) 6, 141
XceI RCATGY 2 cut(s) 372, 621
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 2 cut(s) 98, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.