Rh6DG199800

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002281
Physical Location & Seq
Reverse (-)
35607305 .. 35608256
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG199800.1

Sequence Viewer

Length: 627 bp
ATGCCGAGACGTAAGCAAAAAGCTCAACGTATTCGCAGTTCGACCTCAGGTCCGACTGGTCAAAACACTGGAGGTCGAAGCCGTGTTGGAAGACACCAAAGGATACCCGTCATACCACCAATAACCCGCCCGGCGGATTCACTCAGTCATGGTGTTAAAGCTCACAAGCCAGAGCACAGGAATCCTTCGGCACCTATTGTGCATGTTGATCCTGATATCCATTTGTCATCGAAGGAGTTTTCTGGTGAAGTAAAGGGATGTGGAAGTAATAGGTTTTGTGCGCATTGGTATGCTAGGTTGCCTCAAAATGTGAAGGATAAGATTGTGGCAGCTAGTTTTGGAGAATTTGTGAAATGCCTAGTATCAACCGGAAGGCGTGACCGTAAATTGCTGATTGCGTTGGCGGAGAAATGGTGGGATACGACTCACACCTTCCATTTTGACAACATAGGGGAAATGACCATGACGCCCAAGGATTTCAGTGCAATAATAGGAATTCCTGTTAGTGGAAAACCACTTGAGTATGACATGGATGCACACAGGAAGAAGGCACATCTTTTGCAGTTATGTGGAAAAAGACTTGCTGACCTTGCAAACCAATCTGTAAAGTACACGCAGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

208

Amino Acids

23.25

Weight (kDa)

10.13

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 116 - 198 2.5e-13 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 3 cut(s) 127, 134, 404
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 344, 495
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 2 cut(s) 133, 506
AhdI GACNNNNNGTC 1 cut(s) 48
AluBI AGCT 3 cut(s) 23, 161, 332
AluI AGCT 3 cut(s) 23, 161, 332
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 344, 495
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 66
BciVI GTATCC 2 cut(s) 96, 412
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 3 cut(s) 294, 333, 359
BfuI GTATCC 2 cut(s) 96, 412
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 4 cut(s) 333, 363, 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 506
Bse1I ACTGG 2 cut(s) 61, 73
Bse21I CCTNAGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 263, 538
BseLI CCNNNNNNNGG 2 cut(s) 133, 506
BseMII CTCAG 2 cut(s) 60, 157
BseNI ACTGG 2 cut(s) 61, 73
BseXI GCAGC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 2 cut(s) 131, 369
BslI CCNNNNNNNGG 2 cut(s) 133, 506
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 3 cut(s) 127, 134, 404
BspCNI CTCAG 2 cut(s) 59, 156
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 61, 73
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 467
BstDEI CTNAG 2 cut(s) 46, 143
BstF5I GGATG 2 cut(s) 263, 538
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 46
BsuI GTATCC 2 cut(s) 96, 412
BtsCI GGATG 2 cut(s) 263, 538
BtsIMutI CAGTG 2 cut(s) 66, 487
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 475
Csp6I GTAC 1 cut(s) 610
CviAII CATG 4 cut(s) 149, 203, 463, 529
CviJI RGCY 5 cut(s) 23, 81, 161, 169, 332
CviKI_1 RGCY 5 cut(s) 23, 81, 161, 169, 332
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 2 cut(s) 46, 143
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DriI GACNNNNNGTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 48
EciI GGCGGA 2 cut(s) 149, 419
Eco130I CCWWGG 1 cut(s) 471
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 495
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 4 cut(s) 152, 206, 466, 532
FaiI YATR 9 cut(s) 113, 150, 204, 291, 449, 464, 525, 530, 568
FatI CATG 4 cut(s) 148, 202, 462, 528
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 270, 545
Fsp4HI GCNGC 1 cut(s) 330
FspAI RTGCGCAY 1 cut(s) 282
FspBI CTAG 3 cut(s) 294, 333, 359
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 90
HapII CCGG 2 cut(s) 131, 369
HgaI GACGC 1 cut(s) 475
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 4 cut(s) 152, 206, 466, 532
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 3 cut(s) 137, 181, 424
HpaII CCGG 2 cut(s) 131, 369
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 6 cut(s) 195, 226, 307, 366, 442, 541
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 2 cut(s) 10, 28
HpyCH4V TGCA 5 cut(s) 202, 485, 536, 562, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 2 cut(s) 46, 143
HpySE526I ACGT 2 cut(s) 10, 28
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 4 cut(s) 152, 206, 466, 532
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 1 cut(s) 208
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 523
MaeI CTAG 3 cut(s) 294, 333, 359
MaeII ACGT 2 cut(s) 10, 28
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 102, 556
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 344, 386, 495
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 2 cut(s) 67, 77
MnlI CCTC 3 cut(s) 55, 65, 312
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 2 cut(s) 131, 369
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 590
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 208
NlaIII CATG 4 cut(s) 152, 206, 466, 532
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 377
NsbI TGCGCA 1 cut(s) 282
NspI RCATGY 1 cut(s) 206
PfeI GAWTC 2 cut(s) 137, 181
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 22, 54
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 1 cut(s) 523
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 3 cut(s) 344, 386, 495
SsiI CCGC 3 cut(s) 127, 134, 404
SspMI CTAG 3 cut(s) 294, 333, 359
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 2 cut(s) 13, 31
TaqI TCGA 3 cut(s) 41, 76, 230
TasI AATT 3 cut(s) 344, 386, 495
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 2 cut(s) 137, 181
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 73, 487
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 377
TspRI CASTG 2 cut(s) 73, 487
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 344, 495
XceI RCATGY 1 cut(s) 206
XspI CTAG 3 cut(s) 294, 333, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.