Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

51969223 .. 51970860

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCGAGACGTAAGCAAAAAGCTCAACGTATTCGCAGTTCGACCTCAGGTGCGACTGGTCAAAACACTGGAGGTCGAAGCTGTGTTGGAAGACACCAAAGCATACCCGTCATACCACCAATAACCCGCCCGGCGGATTCACTCAGTCATGGTGTCAAAGCTAACAAGCCAGAGCACATGAATCCTTTGGTACTTATTGTGCATGTTGATCCTGATATCCATTTGTCATTGAAGGAGTTTTCTGGTGAAGTAAAGGGATGTGGAAGCAATAGGATTTGTGCGCATTGGTATGCTAGGTTGCCTCAAAATGTGAAGGATAAGATTGTGGCAGCTGGTTTTGGAGAATTTGTGAAATGCCCAGTATCAACCGGAAGGCGTGACCGTAAATTGCTGATTTCGTTGGCGGAGAGATGGACAAACACCATCAATCTTTGGTTCCTTCCTAGTTTGAAGATATGGGCTTGCGAGTACTTGAAACCGTTGGCTCTGTTACATCCTTTGGGTGGAGATGACCGGTGGCCTTGGGCAACTCGTTGGTTTGGTGCAAAGGATGTCCGAGAGTGCGCTCACAGCTTGAACAATTTCAGAGTCACTCTTAGGTCCCTTACCACCGATCAGAGACCCTTGGGTGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

10.08

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AciI	CCGC	3 cut(s)	127, 134, 404
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	2 cut(s)	192, 470
AfiI	CCNNNNNNNGG	2 cut(s)	133, 503
AgeI	ACCGGT	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	232, 451, 475, 577
AluBI	AGCT	5 cut(s)	23, 81, 161, 332, 573
AluI	AGCT	5 cut(s)	23, 81, 161, 332, 573
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	344
AsiGI	ACCGGT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	283, 566
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	600
AxyI	CCTNAGG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	2 cut(s)	405, 431
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	294, 444
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	2 cut(s)	437, 602
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	521, 624
BsaWI	WCCGGW	2 cut(s)	368, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 503
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	3 cut(s)	61, 73, 359
Bse21I	CCTNAGG	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	521, 624
BseGI	GGATG	3 cut(s)	263, 493, 556
BseLI	CCNNNNNNNGG	2 cut(s)	133, 503
BseMII	CTCAG	2 cut(s)	60, 157
BseNI	ACTGG	3 cut(s)	61, 73, 359
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	520
BshTI	ACCGGT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	131, 369, 514
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	133, 503
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	208, 613
BspACI	CCGC	3 cut(s)	127, 134, 404
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	2 cut(s)	59, 156
BspLI	GGNNCC	2 cut(s)	437, 602
BspPI	GGATC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	61, 73, 359
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	521, 624
BssMI	GATC	2 cut(s)	208, 613
BssT1I	CCWWGG	2 cut(s)	521, 624
Bst4CI	ACNGT	2 cut(s)	383, 480
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	46, 143, 596
BstEII	GGTNACC	1 cut(s)	629
BstF5I	GGATG	3 cut(s)	263, 493, 556
BstHHI	GCGC	2 cut(s)	283, 566
BstKTI	GATC	2 cut(s)	211, 616
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	2 cut(s)	208, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	97
Bsu36I	CCTNAGG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	263, 493, 556
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	463
CfoI	GCGC	2 cut(s)	283, 566
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	191, 469
CspAI	ACCGGT	1 cut(s)	513
CviAII	CATG	3 cut(s)	149, 178, 203
CviJI	RGCY	9 cut(s)	23, 81, 161, 169, 332, 461, 485, 520, 573
CviKI_1	RGCY	9 cut(s)	23, 81, 161, 169, 332, 461, 485, 520, 573
CviQI	GTAC	2 cut(s)	191, 469
DdeI	CTNAG	3 cut(s)	46, 143, 596
DpnI	GATC	2 cut(s)	210, 615
DpnII	GATC	2 cut(s)	208, 613
EciI	GGCGGA	2 cut(s)	149, 419
Eco130I	CCWWGG	2 cut(s)	521, 624
Eco31I	GGTCTC	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	600
Eco81I	CCTNAGG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	600
EcoO65I	GGTNACC	1 cut(s)	629
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	521, 624
ErhI	CCWWGG	2 cut(s)	521, 624
FaeI	CATG	3 cut(s)	152, 181, 206
FaiI	YATR	7 cut(s)	104, 113, 150, 179, 204, 291, 457
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	3 cut(s)	148, 177, 202
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	270, 480, 563
Fsp4HI	GCNGC	1 cut(s)	330
FspAI	RTGCGCAY	1 cut(s)	282
FspBI	CTAG	2 cut(s)	294, 444
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	2 cut(s)	282, 565
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	3 cut(s)	131, 369, 514
HhaI	GCGC	2 cut(s)	283, 566
Hin1II	CATG	3 cut(s)	152, 181, 206
Hin6I	GCGC	2 cut(s)	281, 564
HinP1I	GCGC	2 cut(s)	281, 564
HinfI	GANTC	3 cut(s)	137, 181, 588
HpaII	CCGG	3 cut(s)	131, 369, 514
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	557, 587, 618, 638
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	226, 307, 366, 449
HpyCH4III	ACNGT	2 cut(s)	383, 480
HpyCH4IV	ACGT	2 cut(s)	10, 28
HpyCH4V	TGCA	2 cut(s)	202, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	3 cut(s)	46, 143, 596
HpySE526I	ACGT	2 cut(s)	10, 28
Hsp92II	CATG	3 cut(s)	152, 181, 206
HspAI	GCGC	2 cut(s)	281, 564
Kzo9I	GATC	2 cut(s)	208, 613
Lsp1109I	GCAGC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	294, 444
MaeII	ACGT	2 cut(s)	10, 28
MaeIII	GTNAC	4 cut(s)	377, 489, 589, 629
MalI	GATC	2 cut(s)	210, 615
MboI	GATC	2 cut(s)	208, 613
MboII	GAAGA	2 cut(s)	102, 463
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	344, 386, 580
MlyI	GAGTC	1 cut(s)	597
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	55, 65, 312
MroXI	GAANNNNTTC	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	131, 369, 514
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	570
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	208, 613
NlaIII	CATG	3 cut(s)	152, 181, 206
NlaIV	GGNNCC	2 cut(s)	437, 602
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	3 cut(s)	377, 589, 629
NsbI	TGCGCA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	137, 181
PinAI	ACCGGT	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	437, 602
PspPI	GGNCC	1 cut(s)	600
PspPPI	RGGWCCY	1 cut(s)	600
PsrI	GAACNNNNNNTAC	2 cut(s)	22, 54
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	192, 470
RsaNI	GTAC	2 cut(s)	191, 469
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	208, 613
Sau96I	GGNCC	1 cut(s)	600
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	344, 386, 580
SsiI	CCGC	3 cut(s)	127, 134, 404
SspMI	CTAG	2 cut(s)	294, 444
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	521, 624
TaaI	ACNGT	2 cut(s)	383, 480
TaiI	ACGT	2 cut(s)	13, 31
TaqI	TCGA	2 cut(s)	41, 76
TasI	AATT	3 cut(s)	344, 386, 580
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	137, 181
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	3 cut(s)	377, 589, 629
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	3 cut(s)	377, 589, 629
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	2 cut(s)	294, 444
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.