Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

55945170 .. 55948565

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG394600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTCCGAGTCTTCCTTCTGTGTTTGTTGGGTTCAACTTTGTTTACCGGAAGGACAAACACCATCAATCTTTGGTTCCTTCCTAGTTTGAAGGTGATTAGTGAAATTGGGACGTACAATTGGGGTGGGCCAGCACTGTCCTCTCTCTACCTCTATATGGATTCACTTAGTCATGGAAAGACCGAGAGCATTGCTGGATTCTGGCGAGCTTGTGAGATATGGGCTTGCGAGTACTTGAAACCGTTGGCTCTGTTACATCCTTTGGGTGGAGATGACCGGTGGCCTTGGGCAACTCGTTGGTTTGGTGCAAAGGATGTCCGAGAGTGCGCTCACAGCTTGAACAATTTCAGAGTCACTCTTAGGTCCCTTACCACTGATCAGGTAGAGTACTGGTGGTTGATCAATTTTGTTATAGGGTCTAGATTGGAAAAGACAAGGAATAGAGAGGAAGCCAAAAATAAGATAAAAGAAAACTTTGGACTTGTGTGGAGATTAGAGAAAGGCCAAGGAGTTGAGTCAATTTTGCTGTACTTGCCGATTACCTCTGAGTTCGTCACATCAAGGCAGTTGGTTATCACTGGCACAGTGGAGTTTATAGTCGATACAGTCTCAGGCCAATTTTATTTCATCGAGATGAATACCCGTCTTCAGGTTGAGCATCCTGGTAAAACTGAAGGATTGCTTGACAAAGTTTCAGGCATATCTCATTGTAGAGTTTCAGGTTTGGTATCCATCTCTGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

PMD

Protein Analysis

248

Amino Acids

28.28

Weight (kDa)

7.62

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	3 - 130	6.9e-13	Plant mobile domain
CPSase_L_D2	PF02786	190 - 221	1.8e-08	Carbamoyl-phosphate synthase L chain, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	632, 693
AfaI	GTAC	4 cut(s)	116, 233, 389, 530
AfiI	CCNNNNNNNGG	3 cut(s)	157, 266, 649
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	36, 91, 238, 340
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	2 cut(s)	209, 336
AluI	AGCT	2 cut(s)	209, 336
Alw26I	GTCTC	1 cut(s)	613
AoxI	GGCC	4 cut(s)	128, 281, 502, 613
AsiGI	ACCGGT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	4, 128, 363
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	4, 363
BbsI	GAAGAC	2 cut(s)	4, 638
BccI	CCATC	2 cut(s)	71, 740
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	739
BclI	TGATCA	2 cut(s)	376, 399
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	84, 420
BfuI	GTATCC	1 cut(s)	739
BmcAI	AGTACT	2 cut(s)	233, 389
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	2 cut(s)	4, 363
BmgT120I	GGNCC	3 cut(s)	4, 128, 363
BmiI	GGNNCC	2 cut(s)	77, 365
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	2 cut(s)	4, 638
BsaJI	CCNNGG	2 cut(s)	284, 505
BsaWI	WCCGGW	2 cut(s)	47, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 266, 649
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	395, 583
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	284, 505
BseGI	GGATG	3 cut(s)	256, 319, 658
BseLI	CCNNNNNNNGG	3 cut(s)	157, 266, 649
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	537, 624, 729
BseNI	ACTGG	2 cut(s)	395, 583
BshFI	GGCC	4 cut(s)	130, 283, 504, 615
BshTI	ACCGGT	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	48, 277
BslFI	GGGAC	2 cut(s)	124, 349
BslI	CCNNNNNNNGG	3 cut(s)	157, 266, 649
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	2 cut(s)	124, 349
BsnI	GGCC	4 cut(s)	130, 283, 504, 615
Bsp143I	GATC	2 cut(s)	376, 399
BspANI	GGCC	4 cut(s)	130, 283, 504, 615
BspCNI	CTCAG	3 cut(s)	538, 623, 730
BspLI	GGNNCC	2 cut(s)	77, 365
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	395, 583
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	284, 505
BssMI	GATC	2 cut(s)	376, 399
BssT1I	CCWWGG	2 cut(s)	284, 505
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	4 cut(s)	138, 243, 586, 607
BstC8I	GCNNGC	3 cut(s)	132, 207, 226
BstDEI	CTNAG	5 cut(s)	167, 359, 546, 610, 738
BstF5I	GGATG	3 cut(s)	256, 319, 658
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	379, 402
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	2 cut(s)	376, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 532
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstV2I	GAAGAC	2 cut(s)	4, 638
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	4 cut(s)	130, 283, 504, 615
BtsCI	GGATG	3 cut(s)	256, 319, 658
BtsIMutI	CAGTG	4 cut(s)	134, 372, 576, 591
Cac8I	GCNNGC	3 cut(s)	132, 207, 226
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	3 cut(s)	4, 128, 363
Csp6I	GTAC	4 cut(s)	115, 232, 388, 529
CspAI	ACCGGT	1 cut(s)	276
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	130, 209, 224, 248, 283, 336, 452, 504, 615
CviKI_1	RGCY	9 cut(s)	130, 209, 224, 248, 283, 336, 452, 504, 615
CviQI	GTAC	4 cut(s)	115, 232, 388, 529
DdeI	CTNAG	5 cut(s)	167, 359, 546, 610, 738
DpnI	GATC	2 cut(s)	378, 401
DpnII	GATC	2 cut(s)	376, 399
Eco130I	CCWWGG	2 cut(s)	284, 505
Eco47I	GGWCC	2 cut(s)	4, 363
Eco57I	CTGAAG	2 cut(s)	632, 693
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	284, 505
ErhI	CCWWGG	2 cut(s)	284, 505
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	156, 158, 174, 220, 413, 596, 701
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	2 cut(s)	124, 349
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	376, 399
FokI	GGATG	3 cut(s)	243, 326, 645
FspBI	CTAG	2 cut(s)	84, 420
GlaI	GCGC	1 cut(s)	328
HaeIII	GGCC	4 cut(s)	130, 283, 504, 615
HapII	CCGG	2 cut(s)	48, 277
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	5 cut(s)	9, 161, 198, 351, 515
HpaII	CCGG	2 cut(s)	48, 277
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	5 cut(s)	8, 320, 350, 547, 739
Hpy188III	TCNNGA	2 cut(s)	420, 631
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	5 cut(s)	26, 45, 85, 89, 668
HpyCH4III	ACNGT	4 cut(s)	138, 243, 586, 607
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 532
HpyF3I	CTNAG	5 cut(s)	167, 359, 546, 610, 738
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	2 cut(s)	376, 399
Kzo9I	GATC	2 cut(s)	376, 399
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	2 cut(s)	84, 420
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	252, 352, 553
MalI	GATC	2 cut(s)	378, 401
MboI	GATC	2 cut(s)	376, 399
MboII	GAAGA	2 cut(s)	4, 638
MfeI	CAATTG	1 cut(s)	118
MluCI	AATT	6 cut(s)	105, 118, 343, 403, 519, 617
MlyI	GAGTC	3 cut(s)	18, 360, 524
MnlI	CCTC	4 cut(s)	151, 161, 439, 553
MroXI	GAANNNNTTC	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	2 cut(s)	48, 277
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	333, 532
NdeII	GATC	2 cut(s)	376, 399
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	77, 365
NmuCI	GTSAC	2 cut(s)	352, 553
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	161, 198
PinAI	ACCGGT	1 cut(s)	276
PleI	GAGTC	3 cut(s)	17, 359, 523
PpsI	GAGTC	3 cut(s)	17, 359, 523
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	77, 365
PspPI	GGNCC	3 cut(s)	4, 128, 363
PspPPI	RGGWCCY	1 cut(s)	363
RsaI	GTAC	4 cut(s)	116, 233, 389, 530
RsaNI	GTAC	4 cut(s)	115, 232, 388, 529
RseI	CAYNNNNRTG	1 cut(s)	632
Sau3AI	GATC	2 cut(s)	376, 399
Sau96I	GGNCC	3 cut(s)	4, 128, 363
ScaI	AGTACT	2 cut(s)	233, 389
SchI	GAGTC	3 cut(s)	18, 360, 524
ScrFI	CCNGG	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	667
SinI	GGWCC	2 cut(s)	4, 363
SmiMI	CAYNNNNRTG	1 cut(s)	632
Sse9I	AATT	6 cut(s)	105, 118, 343, 403, 519, 617
SspMI	CTAG	2 cut(s)	84, 420
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	2 cut(s)	284, 505
TaaI	ACNGT	4 cut(s)	138, 243, 586, 607
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	600, 630
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	105, 118, 343, 403, 519, 617
TatI	WGTACW	3 cut(s)	231, 387, 528
TfiI	GAWTC	2 cut(s)	161, 198
TscAI	CASTG	4 cut(s)	141, 379, 583, 591
TseFI	GTSAC	2 cut(s)	352, 553
Tsp45I	GTSAC	2 cut(s)	352, 553
TspDTI	ATGAA	2 cut(s)	616, 650
TspRI	CASTG	4 cut(s)	141, 379, 583, 591
VpaK11BI	GGWCC	2 cut(s)	4, 363
XbaI	TCTAGA	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	84, 420
ZrmI	AGTACT	2 cut(s)	233, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.