Protein TIC 40, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1 |
| rosa_laevigata | RLG00000008586 RLG00000008587 RLG00000015554 |
| rosa_multiflora | Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029 |
| rosa_roxburghii | Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420 |
| rosa_rugosa | Rorug05G0254000 |
| rosa_samantha | Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800 |
| rosa_wichuraiana | Rw2G031720 Rw6G000470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 936 |
| Acc16I | TGCGCA | 1 cut(s) | 1077 |
| Acc36I | ACCTGC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 2 cut(s) | 881, 1239 |
| AccII | CGCG | 1 cut(s) | 861 |
| AciI | CCGC | 4 cut(s) | 507, 512, 576, 1051 |
| AcsI | RAATTY | 2 cut(s) | 906, 1083 |
| AcuI | CTGAAG | 2 cut(s) | 1173, 1252 |
| AcvI | CACGTG | 1 cut(s) | 660 |
| AcyI | GRCGYC | 1 cut(s) | 1240 |
| AdeI | CACNNNGTG | 1 cut(s) | 445 |
| AfaI | GTAC | 7 cut(s) | 227, 242, 341, 530, 900, 1040, 1200 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 342, 469, 823 |
| AflIII | ACRYGT | 2 cut(s) | 657, 730 |
| AgsI | TTSAA | 3 cut(s) | 706, 1192, 1209 |
| AoxI | GGCC | 5 cut(s) | 33, 64, 86, 99, 662 |
| ApeKI | GCWGC | 2 cut(s) | 769, 1157 |
| ApoI | RAATTY | 2 cut(s) | 906, 1083 |
| AspLEI | GCGC | 3 cut(s) | 861, 1078, 1242 |
| AspS9I | GGNCC | 6 cut(s) | 25, 64, 87, 663, 753, 827 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 882 |
| AvaII | GGWCC | 3 cut(s) | 25, 753, 827 |
| BanI | GGYRCC | 2 cut(s) | 881, 1239 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 679, 711 |
| BauI | CACGAG | 1 cut(s) | 5 |
| BbrPI | CACGTG | 1 cut(s) | 660 |
| BbsI | GAAGAC | 1 cut(s) | 687 |
| BbvI | GCAGC | 2 cut(s) | 756, 1144 |
| BccI | CCATC | 3 cut(s) | 4, 532, 895 |
| BceAI | ACGGC | 2 cut(s) | 301, 1181 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 904, 938, 980, 1014 |
| BciVI | GTATCC | 1 cut(s) | 990 |
| BclI | TGATCA | 1 cut(s) | 376 |
| BfmI | CTRYAG | 1 cut(s) | 1027 |
| BfoI | RGCGCY | 1 cut(s) | 1243 |
| BfuAI | ACCTGC | 1 cut(s) | 549 |
| BfuI | GTATCC | 1 cut(s) | 990 |
| BisI | GCNGC | 3 cut(s) | 513, 770, 1158 |
| BlsI | GCNGC | 3 cut(s) | 514, 771, 1159 |
| Bme18I | GGWCC | 3 cut(s) | 25, 753, 827 |
| BmgT120I | GGNCC | 6 cut(s) | 25, 64, 87, 663, 753, 827 |
| BmiI | GGNNCC | 7 cut(s) | 665, 743, 754, 828, 883, 1133, 1241 |
| BmrI | ACTGGG | 2 cut(s) | 459, 511 |
| BmsI | GCATC | 2 cut(s) | 361, 1063 |
| BmuI | ACTGGG | 2 cut(s) | 459, 511 |
| BpiI | GAAGAC | 1 cut(s) | 687 |
| Bpu10I | CCTNAGC | 1 cut(s) | 103 |
| BpuEI | CTTGAG | 2 cut(s) | 842, 879 |
| Bsa29I | ATCGAT | 1 cut(s) | 536 |
| BsaAI | YACGTR | 2 cut(s) | 445, 660 |
| BsaHI | GRCGYC | 1 cut(s) | 1240 |
| BsaJI | CCNNGG | 3 cut(s) | 67, 746, 914 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 801, 831 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 342, 469, 823 |
| Bse118I | RCCGGY | 2 cut(s) | 35, 796 |
| Bse1I | ACTGG | 3 cut(s) | 347, 465, 506 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| BseCI | ATCGAT | 1 cut(s) | 536 |
| BseDI | CCNNGG | 3 cut(s) | 67, 746, 914 |
| BseGI | GGATG | 3 cut(s) | 352, 367, 1010 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 342, 469, 823 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 2 cut(s) | 99, 955 |
| BseNI | ACTGG | 3 cut(s) | 347, 465, 506 |
| BseRI | GAGGAG | 2 cut(s) | 322, 993 |
| BseXI | GCAGC | 2 cut(s) | 756, 1144 |
| BseYI | CCCAGC | 1 cut(s) | 1184 |
| Bsh1236I | CGCG | 1 cut(s) | 861 |
| BshFI | GGCC | 5 cut(s) | 35, 66, 88, 101, 664 |
| BshNI | GGYRCC | 2 cut(s) | 881, 1239 |
| BshVI | ATCGAT | 1 cut(s) | 536 |
| BsiSI | CCGG | 3 cut(s) | 36, 773, 797 |
| BslFI | GGGAC | 3 cut(s) | 134, 766, 840 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 342, 469, 823 |
| BsmFI | GGGAC | 3 cut(s) | 134, 766, 840 |
| BsmI | GAATGC | 2 cut(s) | 1186, 1198 |
| BsnI | GGCC | 5 cut(s) | 35, 66, 88, 101, 664 |
| Bsp1407I | TGTACA | 2 cut(s) | 240, 528 |
| Bsp143I | GATC | 3 cut(s) | 376, 533, 1233 |
| Bsp19I | CCATGG | 1 cut(s) | 67 |
| BspACI | CCGC | 4 cut(s) | 507, 512, 576, 1051 |
| BspANI | GGCC | 5 cut(s) | 35, 66, 88, 101, 664 |
| BspCNI | CTCAG | 2 cut(s) | 100, 954 |
| BspDI | ATCGAT | 1 cut(s) | 536 |
| BspFNI | CGCG | 1 cut(s) | 861 |
| BspLI | GGNNCC | 7 cut(s) | 665, 743, 754, 828, 883, 1133, 1241 |
| BspMI | ACCTGC | 1 cut(s) | 549 |
| BspT107I | GGYRCC | 2 cut(s) | 881, 1239 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 2 cut(s) | 35, 796 |
| BsrGI | TGTACA | 2 cut(s) | 240, 528 |
| BsrI | ACTGG | 3 cut(s) | 347, 465, 506 |
| BssAI | RCCGGY | 2 cut(s) | 35, 796 |
| BssECI | CCNNGG | 3 cut(s) | 67, 746, 914 |
| BssMI | GATC | 3 cut(s) | 376, 533, 1233 |
| BssNI | GRCGYC | 1 cut(s) | 1240 |
| BssSI | CACGAG | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 2 cut(s) | 67, 746 |
| Bst2BI | CACGAG | 1 cut(s) | 5 |
| Bst4CI | ACNGT | 3 cut(s) | 225, 710, 793 |
| Bst6I | CTCTTC | 1 cut(s) | 1245 |
| BstACI | GRCGYC | 1 cut(s) | 1240 |
| BstAUI | TGTACA | 2 cut(s) | 240, 528 |
| BstBAI | YACGTR | 2 cut(s) | 445, 660 |
| BstC8I | GCNNGC | 8 cut(s) | 37, 301, 523, 568, 798, 857, 927, 1225 |
| BstDEI | CTNAG | 3 cut(s) | 103, 108, 941 |
| BstDSI | CCRYGG | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 821 |
| BstF5I | GGATG | 3 cut(s) | 352, 367, 1010 |
| BstFNI | CGCG | 1 cut(s) | 861 |
| BstH2I | RGCGCY | 1 cut(s) | 1243 |
| BstHHI | GCGC | 3 cut(s) | 861, 1078, 1242 |
| BstKTI | GATC | 3 cut(s) | 379, 536, 1236 |
| BstMBI | GATC | 3 cut(s) | 376, 533, 1233 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 411, 518, 839, 1075, 1157, 1174, 1220 |
| BstNSI | RCATGY | 1 cut(s) | 734 |
| BstSFI | CTRYAG | 1 cut(s) | 1027 |
| BstUI | CGCG | 1 cut(s) | 861 |
| BstV1I | GCAGC | 2 cut(s) | 756, 1144 |
| BstV2I | GAAGAC | 1 cut(s) | 687 |
| Bsu15I | ATCGAT | 1 cut(s) | 536 |
| BsuI | GTATCC | 1 cut(s) | 990 |
| BsuRI | GGCC | 5 cut(s) | 35, 66, 88, 101, 664 |
| BsuTUI | ATCGAT | 1 cut(s) | 536 |
| BtgI | CCRYGG | 1 cut(s) | 67 |
| BtsCI | GGATG | 3 cut(s) | 352, 367, 1010 |
| BtsI | GCAGTG | 1 cut(s) | 1146 |
| BtsIMutI | CAGTG | 1 cut(s) | 1146 |
| BveI | ACCTGC | 1 cut(s) | 549 |
| Cac8I | GCNNGC | 8 cut(s) | 37, 301, 523, 568, 798, 857, 927, 1225 |
| CfoI | GCGC | 3 cut(s) | 861, 1078, 1242 |
| Cfr10I | RCCGGY | 2 cut(s) | 35, 796 |
| Cfr13I | GGNCC | 6 cut(s) | 25, 64, 87, 663, 753, 827 |
| ClaI | ATCGAT | 1 cut(s) | 536 |
| Csp6I | GTAC | 7 cut(s) | 226, 241, 340, 529, 899, 1039, 1199 |
| CviAII | CATG | 6 cut(s) | 68, 571, 591, 731, 843, 1079 |
| CviQI | GTAC | 7 cut(s) | 226, 241, 340, 529, 899, 1039, 1199 |
| DdeI | CTNAG | 3 cut(s) | 103, 108, 941 |
| DinI | GGCGCC | 1 cut(s) | 1241 |
| DpnI | GATC | 3 cut(s) | 378, 535, 1235 |
| DpnII | GATC | 3 cut(s) | 376, 533, 1233 |
| DraIII | CACNNNGTG | 1 cut(s) | 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 1245 |
| EarI | CTCTTC | 1 cut(s) | 1245 |
| Eco130I | CCWWGG | 2 cut(s) | 67, 746 |
| Eco47I | GGWCC | 3 cut(s) | 25, 753, 827 |
| Eco57I | CTGAAG | 2 cut(s) | 1173, 1252 |
| Eco72I | CACGTG | 1 cut(s) | 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 821 |
| EcoO109I | RGGNCCY | 1 cut(s) | 87 |
| EcoT14I | CCWWGG | 2 cut(s) | 67, 746 |
| EgeI | GGCGCC | 1 cut(s) | 1241 |
| EheI | GGCGCC | 1 cut(s) | 1241 |
| ErhI | CCWWGG | 2 cut(s) | 67, 746 |
| FaeI | CATG | 6 cut(s) | 71, 574, 594, 734, 846, 1082 |
| FaqI | GGGAC | 3 cut(s) | 134, 766, 840 |
| FatI | CATG | 6 cut(s) | 67, 570, 590, 730, 842, 1078 |
| FauI | CCCGC | 2 cut(s) | 500, 569 |
| FbaI | TGATCA | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 3 cut(s) | 513, 770, 1158 |
| FokI | GGATG | 3 cut(s) | 339, 374, 997 |
| Fsp4HI | GCNGC | 3 cut(s) | 513, 770, 1158 |
| FspAI | RTGCGCAY | 1 cut(s) | 1077 |
| FspI | TGCGCA | 1 cut(s) | 1077 |
| GlaI | GCGC | 3 cut(s) | 860, 1077, 1241 |
| GluI | GCNGC | 3 cut(s) | 513, 770, 1158 |
| GsaI | CCCAGC | 1 cut(s) | 1188 |
| HaeII | RGCGCY | 1 cut(s) | 1243 |
| HaeIII | GGCC | 5 cut(s) | 35, 66, 88, 101, 664 |
| HapII | CCGG | 3 cut(s) | 36, 773, 797 |
| HhaI | GCGC | 3 cut(s) | 861, 1078, 1242 |
| Hin1I | GRCGYC | 1 cut(s) | 1240 |
| Hin1II | CATG | 6 cut(s) | 71, 574, 594, 734, 846, 1082 |
| Hin6I | GCGC | 3 cut(s) | 859, 1076, 1240 |
| HinP1I | GCGC | 3 cut(s) | 859, 1076, 1240 |
| HinfI | GANTC | 5 cut(s) | 542, 761, 813, 950, 1261 |
| HpaII | CCGG | 3 cut(s) | 36, 773, 797 |
| HphI | GGTGA | 2 cut(s) | 25, 882 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 655 |
| Hpy188I | TCNGA | 7 cut(s) | 357, 484, 766, 807, 955, 991, 1015 |
| Hpy188III | TCNNGA | 2 cut(s) | 235, 703 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 655 |
| Hpy99I | CGWCG | 2 cut(s) | 178, 1064 |
| HpyAV | CCTTC | 2 cut(s) | 70, 352 |
| HpyCH4III | ACNGT | 3 cut(s) | 225, 710, 793 |
| HpyCH4IV | ACGT | 3 cut(s) | 444, 659, 1045 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 333, 386, 454, 871, 1126, 1160, 1214 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 411, 518, 839, 1075, 1157, 1174, 1220 |
| HpyF3I | CTNAG | 3 cut(s) | 103, 108, 941 |
| HpySE526I | ACGT | 3 cut(s) | 444, 659, 1045 |
| Hsp92I | GRCGYC | 1 cut(s) | 1240 |
| Hsp92II | CATG | 6 cut(s) | 71, 574, 594, 734, 846, 1082 |
| HspAI | GCGC | 3 cut(s) | 859, 1076, 1240 |
| KasI | GGCGCC | 1 cut(s) | 1239 |
| KroI | GCCGGC | 2 cut(s) | 35, 796 |
| KroNI | GCCGGC | 2 cut(s) | 37, 798 |
| Ksp22I | TGATCA | 1 cut(s) | 376 |
| Kzo9I | GATC | 3 cut(s) | 376, 533, 1233 |
| LmnI | GCTCC | 2 cut(s) | 1006, 1174 |
| Lsp1109I | GCAGC | 2 cut(s) | 756, 1144 |
| LweI | GCATC | 2 cut(s) | 361, 1063 |
| MaeII | ACGT | 3 cut(s) | 444, 659, 1045 |
| MaeIII | GTNAC | 4 cut(s) | 862, 1046, 1144, 1262 |
| MalI | GATC | 3 cut(s) | 378, 535, 1235 |
| MboI | GATC | 3 cut(s) | 376, 533, 1233 |
| MboII | GAAGA | 3 cut(s) | 687, 788, 1262 |
| MluCI | AATT | 8 cut(s) | 266, 381, 493, 736, 906, 1083, 1092, 1121 |
| Mly113I | GGCGCC | 1 cut(s) | 1240 |
| MlyI | GAGTC | 3 cut(s) | 755, 959, 1270 |
| MmeI | TCCRAC | 3 cut(s) | 133, 507, 1038 |
| MroNI | GCCGGC | 2 cut(s) | 35, 796 |
| MslI | CAYNNNNRTG | 2 cut(s) | 144, 729 |
| MspA1I | CMGCKG | 2 cut(s) | 833, 1272 |
| MspI | CCGG | 3 cut(s) | 36, 773, 797 |
| Mva1269I | GAATGC | 2 cut(s) | 1186, 1198 |
| MvnI | CGCG | 1 cut(s) | 861 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 411, 518, 839, 1075, 1157, 1174, 1220 |
| NaeI | GCCGGC | 2 cut(s) | 37, 798 |
| NarI | GGCGCC | 1 cut(s) | 1240 |
| NcoI | CCATGG | 1 cut(s) | 67 |
| NdeII | GATC | 3 cut(s) | 376, 533, 1233 |
| NgoMIV | GCCGGC | 2 cut(s) | 35, 796 |
| NlaIII | CATG | 6 cut(s) | 71, 574, 594, 734, 846, 1082 |
| NlaIV | GGNNCC | 7 cut(s) | 665, 743, 754, 828, 883, 1133, 1241 |
| NmeAIII | GCCGAG | 1 cut(s) | 164 |
| NmuCI | GTSAC | 2 cut(s) | 1144, 1262 |
| NsbI | TGCGCA | 1 cut(s) | 1077 |
| NspI | RCATGY | 1 cut(s) | 734 |
| PciI | ACATGT | 1 cut(s) | 730 |
| PctI | GAATGC | 2 cut(s) | 1186, 1198 |
| PdiI | GCCGGC | 2 cut(s) | 37, 798 |
| PfeI | GAWTC | 2 cut(s) | 542, 813 |
| PkrI | GCNGC | 3 cut(s) | 514, 771, 1159 |
| PleI | GAGTC | 3 cut(s) | 755, 958, 1269 |
| PluTI | GGCGCC | 1 cut(s) | 1243 |
| PmaCI | CACGTG | 1 cut(s) | 660 |
| PmlI | CACGTG | 1 cut(s) | 660 |
| PpsI | GAGTC | 3 cut(s) | 755, 958, 1269 |
| Ppu21I | YACGTR | 2 cut(s) | 445, 660 |
| PscI | ACATGT | 1 cut(s) | 730 |
| PsiI | TTATAA | 1 cut(s) | 936 |
| PspCI | CACGTG | 1 cut(s) | 660 |
| PspFI | CCCAGC | 1 cut(s) | 1184 |
| PspN4I | GGNNCC | 7 cut(s) | 665, 743, 754, 828, 883, 1133, 1241 |
| PspPI | GGNCC | 6 cut(s) | 25, 64, 87, 663, 753, 827 |
| PvuII | CAGCTG | 2 cut(s) | 833, 1272 |
| RsaI | GTAC | 7 cut(s) | 227, 242, 341, 530, 900, 1040, 1200 |
| RsaNI | GTAC | 7 cut(s) | 226, 241, 340, 529, 899, 1039, 1199 |
| RseI | CAYNNNNRTG | 2 cut(s) | 144, 729 |
| SatI | GCNGC | 3 cut(s) | 513, 770, 1158 |
| Sau3AI | GATC | 3 cut(s) | 376, 533, 1233 |
| Sau96I | GGNCC | 6 cut(s) | 25, 64, 87, 663, 753, 827 |
| SchI | GAGTC | 3 cut(s) | 755, 959, 1270 |
| SfaNI | GCATC | 2 cut(s) | 361, 1063 |
| SfcI | CTRYAG | 1 cut(s) | 1027 |
| SfoI | GGCGCC | 1 cut(s) | 1241 |
| SinI | GGWCC | 3 cut(s) | 25, 753, 827 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 144, 729 |
| SmlI | CTYRAG | 2 cut(s) | 821, 894 |
| SmoI | CTYRAG | 2 cut(s) | 821, 894 |
| Sse9I | AATT | 8 cut(s) | 266, 381, 493, 736, 906, 1083, 1092, 1121 |
| SsiI | CCGC | 4 cut(s) | 507, 512, 576, 1051 |
| SspDI | GGCGCC | 1 cut(s) | 1239 |
| StyI | CCWWGG | 2 cut(s) | 67, 746 |
| TaaI | ACNGT | 3 cut(s) | 225, 710, 793 |
| TaiI | ACGT | 3 cut(s) | 447, 662, 1048 |
| TaqI | TCGA | 5 cut(s) | 56, 144, 234, 536, 551 |
| TasI | AATT | 8 cut(s) | 266, 381, 493, 736, 906, 1083, 1092, 1121 |
| TatI | WGTACW | 3 cut(s) | 240, 528, 1038 |
| TauI | GCSGC | 1 cut(s) | 515 |
| TfiI | GAWTC | 2 cut(s) | 542, 813 |
| TscAI | CASTG | 1 cut(s) | 1153 |
| TseFI | GTSAC | 2 cut(s) | 1144, 1262 |
| TseI | GCWGC | 2 cut(s) | 769, 1157 |
| Tsp45I | GTSAC | 2 cut(s) | 1144, 1262 |
| TspDTI | ATGAA | 4 cut(s) | 162, 999, 1076, 1095 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 1 cut(s) | 1153 |
| VpaK11BI | GGWCC | 3 cut(s) | 25, 753, 827 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 821 |
| XapI | RAATTY | 2 cut(s) | 906, 1083 |
| XceI | RCATGY | 1 cut(s) | 734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 990 |