Prupe.5G238200_v2.0.a1

Protein TIC 40, chloroplastic-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
18002435 .. 18004190
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G238200.1

Sequence Viewer

Length: 1275 bp
ATGCACGAGATGGTGAAAGCAAAGGTCCAAGAGGCCGGCTTTTTGCCCTTTTTGTCGATATTGGGCCATGGAAAGAAGGGGGATAGGCCCTTACTTGTGGCCTTAGCTGAGAGGTGGTGGGACACTACCCACACATTCCACTTCGATGAAGTTGGAGAGATGACAATGACCCCGACGGACTTCTCGGCAATCACAGGATTGCGTGTTGGTGGGAAGCGTTTACAGTACGACTTCGAGATGTACAAAAATAAGAACAAGGTGGTCAAATTGTTTGGGAAACCCATTGCTGACCTACTCGCAGGCGAGAGGAGAGTGCCGTATGACAGCCTTTGCACCCCGTACTGGAACAAGCATCCGAAGGATGATAAAGAAGCTGATCAAATTGCACGGGCTTTTATATTGTGCTTGATTGGCTCATCTTTCCTAAATGATAAGAGCCACTACGTGAGTATGCACTACGCCCCCAGTTTGGAAAAAGTGTCCGACATTGGTAATTATGACTGGGGCGGGGCGGCTTTGGCGTGCTTGTACAGATCGATGGATTCTTGTTCGAGGGGCAGGTCAGCAAGCATGGGCGGGTATTGGAGGGCATGGGAGGTATGGGCTTGTGAGTATCTAAAGCCATTTGCTTTATCAAGCCCAAGTGGGAGTGTGAACACGTGGCCCCGAACTTTGAGGTGGGTTGGTATAAAGTCTTCACTCTTGAACCGTTTGCTTTATTACCATAAACATGTAAATTGGAACCCTTGGGGGACCAATGACTCCGAGCTGCCGGAAGAAGTAAAAAAAACCGTGCCGGCAACTCGGAAACGAATCCTCCTTGAGGGACCAGCTGGTTCAGCATGGTTTTTGGGCGAGCGCGTAACAATGCAAAGTTTAGGCACCCCATCACCTCAAGTACCCAAAATTCCACCGAGGACAATGCTTGCCGATTATAAGCTCAGTAATGAGTCAGAAGTGGAGGAAGCAGTAAATGGGTATCCAGCTTCCGAATGGGTTGCTCCTCGTTCATCCGACTATGCTGACTACAGAGATGAGTACATACGTTACCGCCACTACGACGACTTGCGTGATGCGCATGAAATTCATATAATTTTGCCTAACTCTAAAATGATACCTGAATTGCACAGGAACCACAACATAGTCACTGCTGAAGCTGCAACAGAGCTTTTGGAGCTGAATGCTGGGTTGAATGCCGTACTATTTTCAACTGCATTGGAAGCAAGCACAGAGATCAGGCGCCTACGGGAAGAGATTGTGAGTCACTTCAGCTGA

Protein Analysis

425

Amino Acids

48.26

Weight (kDa)

6.74

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
Acc16I TGCGCA 1 cut(s) 1077
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 881, 1239
AccII CGCG 1 cut(s) 861
AciI CCGC 4 cut(s) 507, 512, 576, 1051
AcsI RAATTY 2 cut(s) 906, 1083
AcuI CTGAAG 2 cut(s) 1173, 1252
AcvI CACGTG 1 cut(s) 660
AcyI GRCGYC 1 cut(s) 1240
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 7 cut(s) 227, 242, 341, 530, 900, 1040, 1200
AfiI CCNNNNNNNGG 3 cut(s) 342, 469, 823
AflIII ACRYGT 2 cut(s) 657, 730
AgsI TTSAA 3 cut(s) 706, 1192, 1209
AoxI GGCC 5 cut(s) 33, 64, 86, 99, 662
ApeKI GCWGC 2 cut(s) 769, 1157
ApoI RAATTY 2 cut(s) 906, 1083
AspLEI GCGC 3 cut(s) 861, 1078, 1242
AspS9I GGNCC 6 cut(s) 25, 64, 87, 663, 753, 827
AsuHPI GGTGA 2 cut(s) 25, 882
AvaII GGWCC 3 cut(s) 25, 753, 827
BanI GGYRCC 2 cut(s) 881, 1239
BarI GAAGNNNNNNTAC 2 cut(s) 679, 711
BauI CACGAG 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 756, 1144
BccI CCATC 3 cut(s) 4, 532, 895
BceAI ACGGC 2 cut(s) 301, 1181
BcgI CGANNNNNNTGC 4 cut(s) 904, 938, 980, 1014
BciVI GTATCC 1 cut(s) 990
BclI TGATCA 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 1027
BfoI RGCGCY 1 cut(s) 1243
BfuAI ACCTGC 1 cut(s) 549
BfuI GTATCC 1 cut(s) 990
BisI GCNGC 3 cut(s) 513, 770, 1158
BlsI GCNGC 3 cut(s) 514, 771, 1159
Bme18I GGWCC 3 cut(s) 25, 753, 827
BmgT120I GGNCC 6 cut(s) 25, 64, 87, 663, 753, 827
BmiI GGNNCC 7 cut(s) 665, 743, 754, 828, 883, 1133, 1241
BmrI ACTGGG 2 cut(s) 459, 511
BmsI GCATC 2 cut(s) 361, 1063
BmuI ACTGGG 2 cut(s) 459, 511
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 842, 879
Bsa29I ATCGAT 1 cut(s) 536
BsaAI YACGTR 2 cut(s) 445, 660
BsaHI GRCGYC 1 cut(s) 1240
BsaJI CCNNGG 3 cut(s) 67, 746, 914
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 469, 823
Bse118I RCCGGY 2 cut(s) 35, 796
Bse1I ACTGG 3 cut(s) 347, 465, 506
Bse3DI GCAATG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 3 cut(s) 67, 746, 914
BseGI GGATG 3 cut(s) 352, 367, 1010
BseLI CCNNNNNNNGG 3 cut(s) 342, 469, 823
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 99, 955
BseNI ACTGG 3 cut(s) 347, 465, 506
BseRI GAGGAG 2 cut(s) 322, 993
BseXI GCAGC 2 cut(s) 756, 1144
BseYI CCCAGC 1 cut(s) 1184
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 5 cut(s) 35, 66, 88, 101, 664
BshNI GGYRCC 2 cut(s) 881, 1239
BshVI ATCGAT 1 cut(s) 536
BsiSI CCGG 3 cut(s) 36, 773, 797
BslFI GGGAC 3 cut(s) 134, 766, 840
BslI CCNNNNNNNGG 3 cut(s) 342, 469, 823
BsmFI GGGAC 3 cut(s) 134, 766, 840
BsmI GAATGC 2 cut(s) 1186, 1198
BsnI GGCC 5 cut(s) 35, 66, 88, 101, 664
Bsp1407I TGTACA 2 cut(s) 240, 528
Bsp143I GATC 3 cut(s) 376, 533, 1233
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 4 cut(s) 507, 512, 576, 1051
BspANI GGCC 5 cut(s) 35, 66, 88, 101, 664
BspCNI CTCAG 2 cut(s) 100, 954
BspDI ATCGAT 1 cut(s) 536
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 7 cut(s) 665, 743, 754, 828, 883, 1133, 1241
BspMI ACCTGC 1 cut(s) 549
BspT107I GGYRCC 2 cut(s) 881, 1239
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 2 cut(s) 35, 796
BsrGI TGTACA 2 cut(s) 240, 528
BsrI ACTGG 3 cut(s) 347, 465, 506
BssAI RCCGGY 2 cut(s) 35, 796
BssECI CCNNGG 3 cut(s) 67, 746, 914
BssMI GATC 3 cut(s) 376, 533, 1233
BssNI GRCGYC 1 cut(s) 1240
BssSI CACGAG 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 67, 746
Bst2BI CACGAG 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 225, 710, 793
Bst6I CTCTTC 1 cut(s) 1245
BstACI GRCGYC 1 cut(s) 1240
BstAUI TGTACA 2 cut(s) 240, 528
BstBAI YACGTR 2 cut(s) 445, 660
BstC8I GCNNGC 8 cut(s) 37, 301, 523, 568, 798, 857, 927, 1225
BstDEI CTNAG 3 cut(s) 103, 108, 941
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 3 cut(s) 352, 367, 1010
BstFNI CGCG 1 cut(s) 861
BstH2I RGCGCY 1 cut(s) 1243
BstHHI GCGC 3 cut(s) 861, 1078, 1242
BstKTI GATC 3 cut(s) 379, 536, 1236
BstMBI GATC 3 cut(s) 376, 533, 1233
BstMWI GCNNNNNNNGC 7 cut(s) 411, 518, 839, 1075, 1157, 1174, 1220
BstNSI RCATGY 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 1027
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 756, 1144
BstV2I GAAGAC 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 536
BsuI GTATCC 1 cut(s) 990
BsuRI GGCC 5 cut(s) 35, 66, 88, 101, 664
BsuTUI ATCGAT 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 352, 367, 1010
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 1 cut(s) 1146
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 8 cut(s) 37, 301, 523, 568, 798, 857, 927, 1225
CfoI GCGC 3 cut(s) 861, 1078, 1242
Cfr10I RCCGGY 2 cut(s) 35, 796
Cfr13I GGNCC 6 cut(s) 25, 64, 87, 663, 753, 827
ClaI ATCGAT 1 cut(s) 536
Csp6I GTAC 7 cut(s) 226, 241, 340, 529, 899, 1039, 1199
CviAII CATG 6 cut(s) 68, 571, 591, 731, 843, 1079
CviQI GTAC 7 cut(s) 226, 241, 340, 529, 899, 1039, 1199
DdeI CTNAG 3 cut(s) 103, 108, 941
DinI GGCGCC 1 cut(s) 1241
DpnI GATC 3 cut(s) 378, 535, 1235
DpnII GATC 3 cut(s) 376, 533, 1233
DraIII CACNNNGTG 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 1245
EarI CTCTTC 1 cut(s) 1245
Eco130I CCWWGG 2 cut(s) 67, 746
Eco47I GGWCC 3 cut(s) 25, 753, 827
Eco57I CTGAAG 2 cut(s) 1173, 1252
Eco72I CACGTG 1 cut(s) 660
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 67, 746
EgeI GGCGCC 1 cut(s) 1241
EheI GGCGCC 1 cut(s) 1241
ErhI CCWWGG 2 cut(s) 67, 746
FaeI CATG 6 cut(s) 71, 574, 594, 734, 846, 1082
FaqI GGGAC 3 cut(s) 134, 766, 840
FatI CATG 6 cut(s) 67, 570, 590, 730, 842, 1078
FauI CCCGC 2 cut(s) 500, 569
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 513, 770, 1158
FokI GGATG 3 cut(s) 339, 374, 997
Fsp4HI GCNGC 3 cut(s) 513, 770, 1158
FspAI RTGCGCAY 1 cut(s) 1077
FspI TGCGCA 1 cut(s) 1077
GlaI GCGC 3 cut(s) 860, 1077, 1241
GluI GCNGC 3 cut(s) 513, 770, 1158
GsaI CCCAGC 1 cut(s) 1188
HaeII RGCGCY 1 cut(s) 1243
HaeIII GGCC 5 cut(s) 35, 66, 88, 101, 664
HapII CCGG 3 cut(s) 36, 773, 797
HhaI GCGC 3 cut(s) 861, 1078, 1242
Hin1I GRCGYC 1 cut(s) 1240
Hin1II CATG 6 cut(s) 71, 574, 594, 734, 846, 1082
Hin6I GCGC 3 cut(s) 859, 1076, 1240
HinP1I GCGC 3 cut(s) 859, 1076, 1240
HinfI GANTC 5 cut(s) 542, 761, 813, 950, 1261
HpaII CCGG 3 cut(s) 36, 773, 797
HphI GGTGA 2 cut(s) 25, 882
Hpy166II GTNNAC 2 cut(s) 221, 655
Hpy188I TCNGA 7 cut(s) 357, 484, 766, 807, 955, 991, 1015
Hpy188III TCNNGA 2 cut(s) 235, 703
Hpy8I GTNNAC 2 cut(s) 221, 655
Hpy99I CGWCG 2 cut(s) 178, 1064
HpyAV CCTTC 2 cut(s) 70, 352
HpyCH4III ACNGT 3 cut(s) 225, 710, 793
HpyCH4IV ACGT 3 cut(s) 444, 659, 1045
HpyCH4V TGCA 8 cut(s) 4, 333, 386, 454, 871, 1126, 1160, 1214
HpyF10VI GCNNNNNNNGC 7 cut(s) 411, 518, 839, 1075, 1157, 1174, 1220
HpyF3I CTNAG 3 cut(s) 103, 108, 941
HpySE526I ACGT 3 cut(s) 444, 659, 1045
Hsp92I GRCGYC 1 cut(s) 1240
Hsp92II CATG 6 cut(s) 71, 574, 594, 734, 846, 1082
HspAI GCGC 3 cut(s) 859, 1076, 1240
KasI GGCGCC 1 cut(s) 1239
KroI GCCGGC 2 cut(s) 35, 796
KroNI GCCGGC 2 cut(s) 37, 798
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 376, 533, 1233
LmnI GCTCC 2 cut(s) 1006, 1174
Lsp1109I GCAGC 2 cut(s) 756, 1144
LweI GCATC 2 cut(s) 361, 1063
MaeII ACGT 3 cut(s) 444, 659, 1045
MaeIII GTNAC 4 cut(s) 862, 1046, 1144, 1262
MalI GATC 3 cut(s) 378, 535, 1235
MboI GATC 3 cut(s) 376, 533, 1233
MboII GAAGA 3 cut(s) 687, 788, 1262
MluCI AATT 8 cut(s) 266, 381, 493, 736, 906, 1083, 1092, 1121
Mly113I GGCGCC 1 cut(s) 1240
MlyI GAGTC 3 cut(s) 755, 959, 1270
MmeI TCCRAC 3 cut(s) 133, 507, 1038
MroNI GCCGGC 2 cut(s) 35, 796
MslI CAYNNNNRTG 2 cut(s) 144, 729
MspA1I CMGCKG 2 cut(s) 833, 1272
MspI CCGG 3 cut(s) 36, 773, 797
Mva1269I GAATGC 2 cut(s) 1186, 1198
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 7 cut(s) 411, 518, 839, 1075, 1157, 1174, 1220
NaeI GCCGGC 2 cut(s) 37, 798
NarI GGCGCC 1 cut(s) 1240
NcoI CCATGG 1 cut(s) 67
NdeII GATC 3 cut(s) 376, 533, 1233
NgoMIV GCCGGC 2 cut(s) 35, 796
NlaIII CATG 6 cut(s) 71, 574, 594, 734, 846, 1082
NlaIV GGNNCC 7 cut(s) 665, 743, 754, 828, 883, 1133, 1241
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 1144, 1262
NsbI TGCGCA 1 cut(s) 1077
NspI RCATGY 1 cut(s) 734
PciI ACATGT 1 cut(s) 730
PctI GAATGC 2 cut(s) 1186, 1198
PdiI GCCGGC 2 cut(s) 37, 798
PfeI GAWTC 2 cut(s) 542, 813
PkrI GCNGC 3 cut(s) 514, 771, 1159
PleI GAGTC 3 cut(s) 755, 958, 1269
PluTI GGCGCC 1 cut(s) 1243
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 3 cut(s) 755, 958, 1269
Ppu21I YACGTR 2 cut(s) 445, 660
PscI ACATGT 1 cut(s) 730
PsiI TTATAA 1 cut(s) 936
PspCI CACGTG 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 1184
PspN4I GGNNCC 7 cut(s) 665, 743, 754, 828, 883, 1133, 1241
PspPI GGNCC 6 cut(s) 25, 64, 87, 663, 753, 827
PvuII CAGCTG 2 cut(s) 833, 1272
RsaI GTAC 7 cut(s) 227, 242, 341, 530, 900, 1040, 1200
RsaNI GTAC 7 cut(s) 226, 241, 340, 529, 899, 1039, 1199
RseI CAYNNNNRTG 2 cut(s) 144, 729
SatI GCNGC 3 cut(s) 513, 770, 1158
Sau3AI GATC 3 cut(s) 376, 533, 1233
Sau96I GGNCC 6 cut(s) 25, 64, 87, 663, 753, 827
SchI GAGTC 3 cut(s) 755, 959, 1270
SfaNI GCATC 2 cut(s) 361, 1063
SfcI CTRYAG 1 cut(s) 1027
SfoI GGCGCC 1 cut(s) 1241
SinI GGWCC 3 cut(s) 25, 753, 827
SmiMI CAYNNNNRTG 2 cut(s) 144, 729
SmlI CTYRAG 2 cut(s) 821, 894
SmoI CTYRAG 2 cut(s) 821, 894
Sse9I AATT 8 cut(s) 266, 381, 493, 736, 906, 1083, 1092, 1121
SsiI CCGC 4 cut(s) 507, 512, 576, 1051
SspDI GGCGCC 1 cut(s) 1239
StyI CCWWGG 2 cut(s) 67, 746
TaaI ACNGT 3 cut(s) 225, 710, 793
TaiI ACGT 3 cut(s) 447, 662, 1048
TaqI TCGA 5 cut(s) 56, 144, 234, 536, 551
TasI AATT 8 cut(s) 266, 381, 493, 736, 906, 1083, 1092, 1121
TatI WGTACW 3 cut(s) 240, 528, 1038
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 2 cut(s) 542, 813
TscAI CASTG 1 cut(s) 1153
TseFI GTSAC 2 cut(s) 1144, 1262
TseI GCWGC 2 cut(s) 769, 1157
Tsp45I GTSAC 2 cut(s) 1144, 1262
TspDTI ATGAA 4 cut(s) 162, 999, 1076, 1095
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 1153
VpaK11BI GGWCC 3 cut(s) 25, 753, 827
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 2 cut(s) 906, 1083
XceI RCATGY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.