Rh2BG394700

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002281
Physical Location & Seq
Reverse (-)
55948596 .. 55949021
426 bp
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UTR
Exon/CDS
Intron
Rh2BG394700.1

Sequence Viewer

Length: 426 bp
ATGTCCATTGTGATGCAGGAGTTTTATGGTGAAGTAAAGGGATGTGGAAGCAATAGGATTTGTGCGCATTGGTATGCTAGGTTGCCTCAAAATGTGAAGGATAAGATTGTGGCAGCTGGTTTTGGAGAATTTGTGAAATGCCCAGTATCAACCGGAAGGCGTGACCGTAAATTGCTAATTTCGTTGGCGGAGAGATGGTGGGATACGACTCACACCTTCCATTTTGACAACATAGGGGAAATGACCATGACGCCCAAGGATTTCAGTACAATAACAGGAATTCCTGTTAGTGGAAAACCACTTGAGTATAACATGGATGCACACAGGAAGAAGGCACAGCTTTTGCAGTTATGTGGAAAAAGACTTGCTGACCTTGCAAACCAATCTGTAACGTACACGCATGTACGTGATGCTCATTTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

8.95

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 40 - 131 1.2e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AciI CCGC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 128, 279
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 3 cut(s) 268, 395, 405
AfiI CCNNNNNNNGG 1 cut(s) 290
AluBI AGCT 2 cut(s) 116, 340
AluI AGCT 2 cut(s) 116, 340
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 128, 279
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 189
BciVI GTATCC 1 cut(s) 196
BfaI CTAG 2 cut(s) 78, 424
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 3, 307, 400
BmuI ACTGGG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 47, 322
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 290
BspACI CCGC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 407
BstF5I GGATG 2 cut(s) 47, 322
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 47, 322
CfoI GCGC 1 cut(s) 67
CseI GACGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 267, 394, 404
CviAII CATG 3 cut(s) 247, 313, 401
CviJI RGCY 2 cut(s) 116, 340
CviKI_1 RGCY 2 cut(s) 116, 340
CviQI GTAC 3 cut(s) 267, 394, 404
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 250, 316, 404
FaiI YATR 8 cut(s) 27, 75, 233, 248, 309, 314, 352, 402
FatI CATG 3 cut(s) 246, 312, 400
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 54, 329
Fsp4HI GCNGC 1 cut(s) 114
FspAI RTGCGCAY 1 cut(s) 66
FspBI CTAG 2 cut(s) 78, 424
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 114
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 3 cut(s) 250, 316, 404
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 396
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 4 cut(s) 91, 150, 226, 325
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 392, 406
HpyCH4V TGCA 4 cut(s) 16, 320, 346, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 392, 406
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 3 cut(s) 250, 316, 404
HspAI GCGC 1 cut(s) 65
LpnPI CCDG 7 cut(s) 2, 102, 156, 166, 261, 297, 310
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 3 cut(s) 3, 307, 400
MaeI CTAG 2 cut(s) 78, 424
MaeII ACGT 2 cut(s) 392, 406
MaeIII GTNAC 2 cut(s) 161, 388
MboII GAAGA 1 cut(s) 340
MluCI AATT 4 cut(s) 128, 170, 177, 279
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 1 cut(s) 96
MslI CAYNNNNRTG 3 cut(s) 11, 72, 405
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 374
NlaIII CATG 3 cut(s) 250, 316, 404
NmuCI GTSAC 1 cut(s) 161
NsbI TGCGCA 1 cut(s) 66
NspI RCATGY 1 cut(s) 404
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 268, 395, 405
RsaNI GTAC 3 cut(s) 267, 394, 404
RseI CAYNNNNRTG 3 cut(s) 11, 72, 405
SatI GCNGC 1 cut(s) 114
SchI GAGTC 1 cut(s) 202
SetI ASST 7 cut(s) 83, 118, 218, 342, 375, 395, 409
SfaNI GCATC 3 cut(s) 3, 307, 400
SmiMI CAYNNNNRTG 3 cut(s) 11, 72, 405
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 4 cut(s) 128, 170, 177, 279
SsiI CCGC 1 cut(s) 188
SspMI CTAG 2 cut(s) 78, 424
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 2 cut(s) 395, 409
TasI AATT 4 cut(s) 128, 170, 177, 279
TatI WGTACW 1 cut(s) 266
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 161
XapI RAATTY 2 cut(s) 128, 279
XceI RCATGY 1 cut(s) 404
XspI CTAG 2 cut(s) 78, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.