Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

67896325 .. 67896924

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCTGATGCTTTTCTCTCTAATAATTTGCCGTCTTTGACCCGAGCAAGTACTGGTGCCAACACATTCCCAAGGGCACTATGTTGGATTCCTCAGAATGTGGTATCCCATAGTCTTGCAGAGTATAGGGTGATTCTCAAAGACCTCACGTTTGAACAGATTAATTCCTCACCCTGGGGTCCGGGTGAGAAACTTCCATCTTATTGTGTATCTAGCCTGTCGTCGAATAAGAAGAGAATCTTGTTAGAGTCTCGCTGGCAGAGCATGGTATTTGGGCGAAAGGGTCTCCGTACAAAGCATGGGAACAGATCACCATTTAGTCCCCAAAGCTCCCCTGGAGACCATGTTCAGCAACAATGTGATCTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

9.85

Isoelectric Point (pI)

75.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	52, 292
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	173, 334
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	3 cut(s)	255, 290, 333
Ama87I	CYCGRG	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	142, 162, 197, 303
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	56
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	175, 336
BciVI	GTATCC	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	255, 290, 333
BfaI	CTAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	175, 183, 336
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	58, 180
BmrFI	CCNGG	3 cut(s)	175, 183, 336
BpmI	CTGGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	183
BsaI	GGTCTC	2 cut(s)	290, 333
BsaJI	CCNNGG	4 cut(s)	71, 173, 174, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	2 cut(s)	175, 336
BseDI	CCNNGG	4 cut(s)	71, 173, 174, 334
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	58
BseSI	GKGCMC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	3 cut(s)	255, 290, 333
BsmFI	GGGAC	1 cut(s)	306
Bso31I	GGTCTC	2 cut(s)	290, 333
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	308, 361
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	58, 180
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	290, 333
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	71, 173, 174, 334
BssMI	GATC	2 cut(s)	308, 361
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	175, 336
Bst6I	CTCTTC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	93, 365
BstKTI	GATC	2 cut(s)	311, 364
BstMAI	GTCTC	3 cut(s)	255, 290, 333
BstMBI	GATC	2 cut(s)	308, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	175, 336
BstSCI	CCNGG	3 cut(s)	173, 181, 334
BstSLI	GKGCMC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	51, 291
CviAII	CATG	3 cut(s)	265, 299, 344
CviJI	RGCY	2 cut(s)	216, 330
CviKI_1	RGCY	2 cut(s)	216, 330
CviQI	GTAC	2 cut(s)	51, 291
DdeI	CTNAG	2 cut(s)	93, 365
DpnI	GATC	2 cut(s)	310, 363
DpnII	GATC	2 cut(s)	308, 361
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	71
Eco31I	GGTCTC	2 cut(s)	290, 333
Eco47I	GGWCC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	173, 334
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	3 cut(s)	268, 302, 347
FaiI	YATR	6 cut(s)	82, 111, 126, 266, 300, 345
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	3 cut(s)	264, 298, 343
FspBI	CTAG	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	357
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	268, 302, 347
HinfI	GANTC	4 cut(s)	88, 133, 237, 248
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	4 cut(s)	142, 162, 197, 303
Hpy188I	TCNGA	3 cut(s)	7, 96, 368
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	2 cut(s)	93, 365
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	268, 302, 347
Kzo9I	GATC	2 cut(s)	308, 361
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	8 cut(s)	39, 160, 187, 195, 230, 241, 321, 348
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	149
MalI	GATC	2 cut(s)	310, 363
MboI	GATC	2 cut(s)	308, 361
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	25, 163
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	102, 155, 178
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	175, 183, 336
MvaI	CCWGG	2 cut(s)	175, 336
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	308, 361
NlaIII	CATG	3 cut(s)	268, 302, 347
NlaIV	GGNNCC	2 cut(s)	58, 180
PasI	CCCWGGG	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	88, 133, 237
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	173, 334
PspGI	CCWGG	2 cut(s)	173, 334
PspN4I	GGNNCC	2 cut(s)	58, 180
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	52, 292
RsaNI	GTAC	2 cut(s)	51, 291
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	308, 361
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	175, 183, 336
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	3 cut(s)	147, 152, 332
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	25, 163
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	173, 181, 334
StyI	CCWWGG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	25, 163
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	88, 133, 237
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.