RLG00000015554

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002281
Physical Location & Seq
Reverse (-)
67811702 .. 67815474
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015554

Sequence Viewer

Length: 1617 bp
ATGGAGTATCGAAATGCAAGTAACAAATACTTGCTTGCAGCTCTAGCTGAGAAATGGTGGGACACGACCCACACTTTTCATTTAGATAATATTGGAGAATTAACCCTAACTCCTAAAGATTTCAGTGCAATTACTGGATTGCAAGTCAACGGCAGACGACTAAAATATGACATGAAAATTTACAATAAGCCCAACAAGATGAAAACATTGGTTGGGGAGCCACTGGCAAACTTGGGAAAGAAAAGAGTTACGTATCCATGGATACACTACCAATATCAAAACTATGAATGTTCTACGGCTAAAGAAGAGGAAATTTTAACACGAGTATTCATCCTCGTGCTTCTTGGGTCAACAATTTTTCGCGATAAAGGTAATAGGGTTTACTTGTATTTTCTCCCGAGTTTGAAGAAGATCAGCAGTATTGCTAAATATAATTGGGGAGGAAGTGCCCTTGCTTTTCTGTATTGCAATATGGATGCCCTTTGTCGAGGCTTGACTAAAAGCTCCGGCGGATACTCTAAAGCATGGGAGATCTGGGCATGCGAATACATACCGTCTTTGACCCGAGCAAGTAATGGTGCCAACACATTCCCAAGGGCACTATGTTGGACTCCACAGAATGTGGTATCCAATAGTCTTGCAGACCTGTCGTTGAATAAGAAGAGAATCTTGTTAGAGAGTCTCGCTGGCAGAGCATGGTATTTGGGCGAAAGCGTGTCCGTACAAAGCATGGGAACAGATCACCTTTTAGTCCCCAAAGCTCCCCCGGAGACCATGTTCAGCAACAATGTGATCTCAGATGAAGAAATTAAACTTGGATTTGATGGATTTGATGCAACTCAATACTTAGATGACAAGGCTGCAATGACTTACCAAAATTTTCGGGAGCAGTTTCTGTCATACAACTACTCCACCGAACAAGAGGCAAGCAGATGTGGTGGTGGTGATGAAGAGTCACGCCCAAGTTCTACGGCTGATGAAATTAATATACCCCCTTGGACACTAATAGTACCAAAGTTGGAAGAAAACAGTAATCTTCTACAGCTCCCTAATGATGATCAGGTTGTGGGTGTTCGACTTCTAGCTGACATTGATTCAAAGTTACAAAAGGACGTTGCTGGATACGATGACGATGAAGACTACGAAGAAGAGGATGTTGGCAATCAACAATTACTGTTACACGATATGCATAATGAGGACGGTGAGCAAAGAGAGGAGAATAAGCATATCAAGAGCTTTCATAAGGAGGATGTTGACAACATTGTTATTGTACTAAGTGATGATGATGACGAAGAGGAGGAGGCTAAAGAACATGATGGTAATGATGATGGTGATGATGATGATGAGGGGAAGGAGTCCCAGGATGATCATAAAGAAAATGAGGACAAGGATATTAGCGAACATGGGCATGGCGATGATGAGGCTGATGAGGAGAGTCACGAAAATGGTGAGGAAAGTGAGGAGGAGGAAGATGACAGTTCTGATGAGGAATCAGATTCTTGTTCCGCGCTGGAAAAGAAGCGCAAGAAATGTGAAGATCCTACCTATCAAGGAAATGATCCTAAAAGGGCAAAGACTCCTTTCTTTTTTGGTGCCCCTGGACCGAGAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

539

Amino Acids

61.06

Weight (kDa)

4.55

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 7 - 208 3.2e-24 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 578, 1592
AccII CGCG 2 cut(s) 363, 1508
AciI CCGC 2 cut(s) 510, 1506
AclWI GGATC 2 cut(s) 1532, 1553
AcsI RAATTY 3 cut(s) 177, 312, 877
AfaI GTAC 3 cut(s) 723, 1011, 1272
AgsI TTSAA 3 cut(s) 406, 655, 1098
AjnI CCWGG 2 cut(s) 1359, 1597
AjuI GAANNNNNNNTTGG 4 cut(s) 798, 830, 1140, 1172
AloI GAACNNNNNNTCC 2 cut(s) 761, 793
AluBI AGCT 7 cut(s) 41, 47, 504, 761, 1045, 1085, 1236
AluI AGCT 7 cut(s) 41, 47, 504, 761, 1045, 1085, 1236
Alw26I GTCTC 2 cut(s) 686, 764
AlwI GGATC 2 cut(s) 1532, 1553
AlwNI CAGNNNCTG 1 cut(s) 895
Ama87I CYCGRG 2 cut(s) 397, 564
ApeKI GCWGC 2 cut(s) 38, 860
ApoI RAATTY 3 cut(s) 177, 312, 877
AseI ATTAAT 1 cut(s) 984
AspLEI GCGC 2 cut(s) 1510, 1524
AspS9I GGNCC 1 cut(s) 1601
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 5 cut(s) 734, 956, 1214, 1343, 1460
AvaI CYCGRG 2 cut(s) 397, 564
AvaII GGWCC 1 cut(s) 1601
BaeGI GKGCMC 3 cut(s) 451, 601, 1597
BanI GGYRCC 2 cut(s) 578, 1592
BauI CACGAG 2 cut(s) 321, 335
BbsI GAAGAC 1 cut(s) 1143
BbvI GCAGC 2 cut(s) 50, 847
BccI CCATC 3 cut(s) 818, 1310, 1322
BceAI ACGGC 3 cut(s) 166, 312, 987
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 2 cut(s) 1361, 1599
BciVI GTATCC 5 cut(s) 255, 264, 506, 637, 1115
BclI TGATCA 2 cut(s) 1057, 1366
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 686, 764
BfaI CTAG 2 cut(s) 44, 1082
BfmI CTRYAG 1 cut(s) 1040
BfuI GTATCC 5 cut(s) 255, 264, 506, 637, 1115
BglII AGATCT 1 cut(s) 531
BisI GCNGC 2 cut(s) 39, 861
BlsI GCNGC 2 cut(s) 40, 862
Bme1390I CCNGG 3 cut(s) 767, 1361, 1599
Bme18I GGWCC 1 cut(s) 1601
BmeT110I CYCGRG 2 cut(s) 397, 564
BmgT120I GGNCC 1 cut(s) 1601
BmiI GGNNCC 3 cut(s) 219, 580, 1594
BmrFI CCNGG 3 cut(s) 767, 1361, 1599
BmsI GCATC 2 cut(s) 466, 823
BpiI GAAGAC 1 cut(s) 1143
BpuMI CCSGG 1 cut(s) 767
BsaAI YACGTR 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 764
BsaJI CCNNGG 6 cut(s) 257, 593, 765, 995, 1359, 1597
BsaXI ACNNNNNCTCC 6 cut(s) 94, 124, 761, 791, 893, 923
Bse1I ACTGG 2 cut(s) 139, 228
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 2 cut(s) 1361, 1599
BseDI CCNNGG 6 cut(s) 257, 593, 765, 995, 1359, 1597
BseGI GGATG 5 cut(s) 330, 481, 1159, 1255, 1369
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 2 cut(s) 39, 810
BseNI ACTGG 2 cut(s) 139, 228
BseRI GAGGAG 6 cut(s) 1229, 1310, 1313, 1445, 1475, 1478
BseSI GKGCMC 3 cut(s) 451, 601, 1597
BseXI GCAGC 2 cut(s) 50, 847
Bsh1236I CGCG 2 cut(s) 363, 1508
BshNI GGYRCC 2 cut(s) 578, 1592
BsiHKCI CYCGRG 2 cut(s) 397, 564
BsiSI CCGG 2 cut(s) 507, 767
BslFI GGGAC 3 cut(s) 74, 737, 1342
BsmAI GTCTC 2 cut(s) 686, 764
BsmFI GGGAC 3 cut(s) 74, 737, 1342
Bso31I GGTCTC 1 cut(s) 764
BsoBI CYCGRG 2 cut(s) 397, 564
Bsp1286I GDGCHC 3 cut(s) 451, 601, 1597
Bsp143I GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
Bsp19I CCATGG 1 cut(s) 257
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 2 cut(s) 510, 1506
BspCNI CTCAG 2 cut(s) 40, 809
BspFNI CGCG 2 cut(s) 363, 1508
BspLI GGNNCC 3 cut(s) 219, 580, 1594
BspPI GGATC 2 cut(s) 1532, 1553
BspT107I GGYRCC 2 cut(s) 578, 1592
BspTNI GGTCTC 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 2 cut(s) 139, 228
BssECI CCNNGG 6 cut(s) 257, 593, 765, 995, 1359, 1597
BssMI GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
BssSI CACGAG 2 cut(s) 321, 335
BssT1I CCWWGG 3 cut(s) 257, 593, 995
Bst2BI CACGAG 2 cut(s) 321, 335
Bst2UI CCWGG 2 cut(s) 1361, 1599
Bst4CI ACNGT 5 cut(s) 555, 1031, 1176, 1202, 1478
Bst6I CTCTTC 5 cut(s) 300, 656, 945, 1143, 1287
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 36, 541, 688, 928
BstDEI CTNAG 4 cut(s) 48, 796, 847, 1274
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 5 cut(s) 330, 481, 1159, 1255, 1369
BstFNI CGCG 2 cut(s) 363, 1508
BstHHI GCGC 2 cut(s) 1510, 1524
BstKTI GATC 8 cut(s) 414, 534, 742, 795, 1060, 1369, 1540, 1561
BstMAI GTCTC 2 cut(s) 686, 764
BstMBI GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
BstMWI GCNNNNNNNGC 2 cut(s) 44, 692
BstNI CCWGG 2 cut(s) 1361, 1599
BstNSI RCATGY 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 765, 1359, 1597
BstSFI CTRYAG 1 cut(s) 1040
BstSLI GKGCMC 3 cut(s) 451, 601, 1597
BstSNI TACGTA 1 cut(s) 252
BstUI CGCG 2 cut(s) 363, 1508
BstV1I GCAGC 2 cut(s) 50, 847
BstV2I GAAGAC 1 cut(s) 1143
BstX2I RGATCY 2 cut(s) 531, 1537
BstYI RGATCY 2 cut(s) 531, 1537
BsuI GTATCC 5 cut(s) 255, 264, 506, 637, 1115
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 1428
BtsCI GGATG 5 cut(s) 330, 481, 1159, 1255, 1369
BtsIMutI CAGTG 2 cut(s) 130, 221
BtuMI TCGCGA 1 cut(s) 363
Cac8I GCNNGC 4 cut(s) 36, 541, 688, 928
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 2 cut(s) 1510, 1524
Cfr13I GGNCC 1 cut(s) 1601
Csp6I GTAC 3 cut(s) 722, 1010, 1271
CviQI GTAC 3 cut(s) 722, 1010, 1271
DdeI CTNAG 4 cut(s) 48, 796, 847, 1274
DpnI GATC 8 cut(s) 413, 533, 741, 794, 1059, 1368, 1539, 1560
DpnII GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
Eam1104I CTCTTC 5 cut(s) 300, 656, 945, 1143, 1287
EarI CTCTTC 5 cut(s) 300, 656, 945, 1143, 1287
EciI GGCGGA 1 cut(s) 525
Eco105I TACGTA 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 257, 593, 995
Eco31I GGTCTC 1 cut(s) 764
Eco47I GGWCC 1 cut(s) 1601
Eco88I CYCGRG 2 cut(s) 397, 564
EcoRII CCWGG 2 cut(s) 1359, 1597
EcoT14I CCWWGG 3 cut(s) 257, 593, 995
EcoT22I ATGCAT 1 cut(s) 1191
ErhI CCWWGG 3 cut(s) 257, 593, 995
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 3 cut(s) 74, 737, 1342
FbaI TGATCA 2 cut(s) 1057, 1366
Fnu4HI GCNGC 2 cut(s) 39, 861
FokI GGATG 5 cut(s) 317, 488, 1166, 1262, 1376
Fsp4HI GCNGC 2 cut(s) 39, 861
FspBI CTAG 2 cut(s) 44, 1082
GlaI GCGC 2 cut(s) 1509, 1523
GluI GCNGC 2 cut(s) 39, 861
HapII CCGG 2 cut(s) 507, 767
HhaI GCGC 2 cut(s) 1510, 1524
Hin6I GCGC 2 cut(s) 1508, 1522
HinP1I GCGC 2 cut(s) 1508, 1522
HincII GTYRAC 3 cut(s) 148, 351, 1255
HindII GTYRAC 3 cut(s) 148, 351, 1255
HpaII CCGG 2 cut(s) 507, 767
HphI GGTGA 5 cut(s) 734, 956, 1214, 1343, 1460
Hpy166II GTNNAC 4 cut(s) 148, 351, 382, 1255
Hpy188I TCNGA 3 cut(s) 799, 1483, 1495
Hpy188III TCNNGA 5 cut(s) 362, 397, 884, 1231, 1439
Hpy8I GTNNAC 4 cut(s) 148, 351, 382, 1255
HpyAV CCTTC 1 cut(s) 1345
HpyCH4III ACNGT 5 cut(s) 555, 1031, 1176, 1202, 1478
HpyCH4IV ACGT 2 cut(s) 251, 1113
HpyCH4V TGCA 9 cut(s) 17, 38, 128, 142, 468, 641, 836, 863, 1189
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 692
HpyF3I CTNAG 4 cut(s) 48, 796, 847, 1274
HpySE526I ACGT 2 cut(s) 251, 1113
HspAI GCGC 2 cut(s) 1508, 1522
Ksp22I TGATCA 2 cut(s) 1057, 1366
Kzo9I GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
LmnI GCTCC 5 cut(s) 217, 509, 766, 886, 1050
Lsp1109I GCAGC 2 cut(s) 50, 847
LweI GCATC 2 cut(s) 466, 823
MaeI CTAG 2 cut(s) 44, 1082
MaeII ACGT 2 cut(s) 251, 1113
MaeIII GTNAC 6 cut(s) 20, 247, 954, 1101, 1176, 1436
MalI GATC 8 cut(s) 413, 533, 741, 794, 1059, 1368, 1539, 1560
MboI GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
MflI RGATCY 2 cut(s) 531, 1537
MhlI GDGCHC 3 cut(s) 451, 601, 1597
MlyI GAGTC 6 cut(s) 604, 688, 962, 1364, 1444, 1570
MmeI TCCRAC 2 cut(s) 587, 999
Mph1103I ATGCAT 1 cut(s) 1191
MseI TTAA 5 cut(s) 101, 317, 810, 984, 1615
MslI CAYNNNNRTG 4 cut(s) 335, 1407, 1413, 1443
MspI CCGG 2 cut(s) 507, 767
MspR9I CCNGG 3 cut(s) 767, 1361, 1599
MvaI CCWGG 2 cut(s) 1361, 1599
MvnI CGCG 2 cut(s) 363, 1508
MwoI GCNNNNNNNGC 2 cut(s) 44, 692
NciI CCSGG 1 cut(s) 767
NcoI CCATGG 1 cut(s) 257
NdeII GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
NlaIV GGNNCC 3 cut(s) 219, 580, 1594
NmuCI GTSAC 2 cut(s) 954, 1436
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 1191
NspI RCATGY 1 cut(s) 543
PaeI GCATGC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 666, 1094, 1490, 1496
PkrI GCNGC 2 cut(s) 40, 862
PleI GAGTC 6 cut(s) 604, 687, 961, 1363, 1443, 1570
PpsI GAGTC 6 cut(s) 604, 687, 961, 1363, 1443, 1570
Ppu21I YACGTR 1 cut(s) 252
PshBI ATTAAT 1 cut(s) 984
Psp6I CCWGG 2 cut(s) 1359, 1597
PspGI CCWGG 2 cut(s) 1359, 1597
PspN4I GGNNCC 3 cut(s) 219, 580, 1594
PspPI GGNCC 1 cut(s) 1601
PstNI CAGNNNCTG 1 cut(s) 895
PsuI RGATCY 2 cut(s) 531, 1537
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 3 cut(s) 723, 1011, 1272
RsaNI GTAC 3 cut(s) 722, 1010, 1271
RseI CAYNNNNRTG 4 cut(s) 335, 1407, 1413, 1443
SaqAI TTAA 5 cut(s) 101, 317, 810, 984, 1615
SatI GCNGC 2 cut(s) 39, 861
Sau3AI GATC 8 cut(s) 411, 531, 739, 792, 1057, 1366, 1537, 1558
Sau96I GGNCC 1 cut(s) 1601
SchI GAGTC 6 cut(s) 604, 688, 962, 1364, 1444, 1570
ScrFI CCNGG 3 cut(s) 767, 1361, 1599
SduI GDGCHC 3 cut(s) 451, 601, 1597
SfaNI GCATC 2 cut(s) 466, 823
SfcI CTRYAG 1 cut(s) 1040
SinI GGWCC 1 cut(s) 1601
SmiMI CAYNNNNRTG 4 cut(s) 335, 1407, 1413, 1443
SnaBI TACGTA 1 cut(s) 252
SphI GCATGC 1 cut(s) 543
SsiI CCGC 2 cut(s) 510, 1506
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 44, 1082
StyD4I CCNGG 3 cut(s) 765, 1359, 1597
StyI CCWWGG 3 cut(s) 257, 593, 995
TaaI ACNGT 5 cut(s) 555, 1031, 1176, 1202, 1478
TaiI ACGT 2 cut(s) 254, 1116
TaqI TCGA 3 cut(s) 10, 487, 1075
TatI WGTACW 1 cut(s) 1270
TfiI GAWTC 4 cut(s) 666, 1094, 1490, 1496
Tru1I TTAA 5 cut(s) 101, 317, 810, 984, 1615
Tru9I TTAA 5 cut(s) 101, 317, 810, 984, 1615
TscAI CASTG 2 cut(s) 130, 228
TseFI GTSAC 2 cut(s) 954, 1436
TseI GCWGC 2 cut(s) 38, 860
Tsp45I GTSAC 2 cut(s) 954, 1436
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 2 cut(s) 130, 228
VpaK11BI GGWCC 1 cut(s) 1601
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 3 cut(s) 177, 312, 877
XceI RCATGY 1 cut(s) 543
XspI CTAG 2 cut(s) 44, 1082
Zsp2I ATGCAT 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.