Rh2BG320100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002281
Physical Location & Seq
Reverse (-)
38237716 .. 38238557
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG320100.1

Sequence Viewer

Length: 342 bp
ATGACGCCCAAGGATTTCAGTGCAATAACTGGAATTCCTGTTAGTGGAAAACCACTTGAGTATGACATGGATTCTCACACAAAGAAGGCACAGCTTTTGCAGTTATGTGGAAAAAGACTTGCCGACCTTGCAAACCAAGCTGTAACGTACACGCAAATATGGGCTGGTGAGTATTTGAAATCGTTGCCTCTCTTACATCCTTTGGGTGGAGATGACCGCTGGCCTCTGGCAACTCGTTGGTTTGGTGCAAAGGATGTCCGCGAATGGGCTCACAGCTTGAACAATTTCAGAGTCACACTTAGGTCCCTTACTTCTGATCAAATTGTCAGAGACCTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

8.82

Isoelectric Point (pI)

19.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 217, 259
AcsI RAATTY 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 44, 206, 265
AgsI TTSAA 2 cut(s) 178, 280
AluBI AGCT 3 cut(s) 94, 140, 276
AluI AGCT 3 cut(s) 94, 140, 276
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 271
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 9, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 206, 265
Bse1I ACTGG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 9, 334
BseGI GGATG 2 cut(s) 196, 259
BseLI CCNNNNNNNGG 3 cut(s) 44, 206, 265
BseNI ACTGG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 44, 206, 265
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 217, 259
BspANI GGCC 1 cut(s) 223
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 9, 334
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 9, 334
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 196, 259
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 128, 137
BstUI CGCG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 196, 259
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 94, 140, 164, 223, 269, 276
CviKI_1 RGCY 6 cut(s) 94, 140, 164, 223, 269, 276
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 299
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 9, 334
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 9, 334
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 2 cut(s) 9, 334
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 63, 68, 106, 160
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 316
FokI GGATG 2 cut(s) 183, 266
FriOI GRGCYC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 70
HinfI GANTC 2 cut(s) 71, 291
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 290, 316, 329
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 23, 100, 131, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 137
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 15, 51, 150, 205, 212
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 142, 292
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 33, 283, 321
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 2 cut(s) 198, 234
MroXI GAANNNNTTC 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 219
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 128, 137
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 71
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 303
PspPPI RGGWCCY 1 cut(s) 303
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 300
SduI GDGCHC 1 cut(s) 271
SetI ASST 7 cut(s) 96, 129, 142, 149, 278, 305, 336
SinI GGWCC 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 3 cut(s) 33, 283, 321
SsiI CCGC 2 cut(s) 217, 259
StyI CCWWGG 2 cut(s) 9, 334
TaiI ACGT 1 cut(s) 149
TasI AATT 3 cut(s) 33, 283, 321
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.