Rh1DG053800

Serine threonine-protein phosphatase 7 long form homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
8594679 .. 8595248
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG053800.1

Sequence Viewer

Length: 570 bp
ATGAGCGGTGGTGGGACACAACTCACACTTTTCACTTTTGATTTTATCGGGGAGCTAACAATAACACCGACGGACTTCAGTGCCATTACTGGTCTGAATTGTTCTGGGAAGAACCTTAAGTATGACACCAAGTTCCGGGACAACTTAGAGAAGGTAACCAGAACATATGGTGAACCCATGGCAACCATTCTAGAAGGAGGAAAGGTTGATTGTAAGAAACTGAGAAGGGCATATGAGAATTGGCAATGCACCGACAAAGTCAAGACGGAACAGCTGACAAGAGTATTTATTCTATTCTTGATAGGGTCTGCCTTGATGCCAAACAAAGTAAACTCAGTTTATTTGCACTATTCCCCCAATTTGATTGATGTTGAGAAAATTGGAAGTTGCAATTGGGGGATACCAGCATTGGCAGTTCTCTACCGGAACCTAGATTTTGTAAGCAGAAAAGGAAAAAGCATGGGGGGTTTATGGAGGGTCGTAGAGGTTTGTGTCGTTGCTATATTAATTTTGTATTTGTGTTGCATAATTGGTTTGCATTTAATTGTTTTCCAGACCCTAAGACATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.25

Weight (kDa)

8.96

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 15 - 153 3.9e-13 Plant mobile domain
DUF1985 PF09331 24 - 142 7.4e-07 Domain of unknown function (DUF1985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 135
AflII CTTAAG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 2 cut(s) 55, 274
AluI AGCT 2 cut(s) 55, 274
AseI ATTAAT 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 182
BciVI GTATCC 1 cut(s) 393
BcnI CCSGG 1 cut(s) 137
BfaI CTAG 2 cut(s) 191, 431
BfrI CTTAAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 212, 348
BseNI ACTGG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 136, 424
BslFI GGGAC 2 cut(s) 28, 152
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 28, 152
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 213, 347
BspLI GGNNCC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 145, 221, 334, 560
BstDSI CCRYGG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 154
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 85
CviAII CATG 2 cut(s) 178, 460
CviJI RGCY 2 cut(s) 55, 274
CviKI_1 RGCY 2 cut(s) 55, 274
DdeI CTNAG 4 cut(s) 145, 221, 334, 560
Eco130I CCWWGG 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 181, 463
FaqI GGGAC 2 cut(s) 28, 152
FatI CATG 2 cut(s) 177, 459
FauNDI CATATG 2 cut(s) 166, 232
FspBI CTAG 2 cut(s) 191, 431
HapII CCGG 2 cut(s) 136, 424
Hin1II CATG 2 cut(s) 181, 463
HpaII CCGG 2 cut(s) 136, 424
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 173, 331
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 4 cut(s) 191, 262, 298, 553
Hpy8I GTNNAC 2 cut(s) 173, 331
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 145, 188, 219
HpyCH4V TGCA 5 cut(s) 249, 346, 390, 525, 538
HpyF3I CTNAG 4 cut(s) 145, 221, 334, 560
Hsp92II CATG 2 cut(s) 181, 463
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 7 cut(s) 75, 90, 149, 172, 417, 437, 566
LweI GCATC 1 cut(s) 306
MaeI CTAG 2 cut(s) 191, 431
MaeIII GTNAC 1 cut(s) 154
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 1 cut(s) 121
MfeI CAATTG 1 cut(s) 391
MluCI AATT 8 cut(s) 97, 238, 358, 378, 391, 507, 528, 543
MnlI CCTC 3 cut(s) 191, 468, 478
MseI TTAA 4 cut(s) 117, 506, 542, 568
MspA1I CMGCKG 1 cut(s) 274
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 2 cut(s) 136, 424
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 391
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 2 cut(s) 166, 232
NlaIII CATG 2 cut(s) 181, 463
NlaIV GGNNCC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 506
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 274
SaqAI TTAA 4 cut(s) 117, 506, 542, 568
ScrFI CCNGG 1 cut(s) 137
SetI ASST 7 cut(s) 57, 117, 156, 207, 276, 432, 489
SfaNI GCATC 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 8 cut(s) 97, 238, 358, 378, 391, 507, 528, 543
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 191, 431
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 177
TasI AATT 8 cut(s) 97, 238, 358, 378, 391, 507, 528, 543
Tru1I TTAA 4 cut(s) 117, 506, 542, 568
Tru9I TTAA 4 cut(s) 117, 506, 542, 568
TscAI CASTG 1 cut(s) 85
TspGWI ACGGA 2 cut(s) 86, 281
TspRI CASTG 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 116
VspI ATTAAT 1 cut(s) 506
XbaI TCTAGA 1 cut(s) 190
XspI CTAG 2 cut(s) 191, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.