Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

35605057 .. 35606293

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTGTGTGATTATCGCCCTCGTACTGAAGATATTTCTCTTGGTGTCATTGGTTGGGATGCAAATCAATTCTTACTGGATGAGGATGCTGACTATGACAAATACCGGAATGACTATCTGGTTTATAAGCACCATACCATCCGTACCGATGAGGTGCATGCATCACAAGCGTTCGAGTTGCTGGACATAATAGCTGGTCAAACATCCCTTATATTCAAGTTGTGCATGGATGGCAATCGCGAGTACCAAAGAACCTTGGAGGAGCAAATTGCTGCCAGCAATATCATTGCTCCCGAGCATCGGACCGCTGGTCGTTCCTCCGTTTCTTTAAGCCCCCTTCGGCTTGATGATGCGGATGACATAGGTGATGTCCATGCAACTAACACCGAAGAGTGTCAGCATGAGGCTGATGGTGCAAATTTAAGTCCGACCGATAACACTCAACCTCGCAAAAAACCAAGGACGGTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

4.78

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	306, 353
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	3 cut(s)	25, 145, 245
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	309
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	146, 224, 404
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	303
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	303
BmsI	GCATC	5 cut(s)	49, 76, 170, 307, 340
BsaBI	GATNNNNATC	2 cut(s)	63, 234
BsaJI	CCNNGG	2 cut(s)	255, 458
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	2 cut(s)	63, 234
BseDI	CCNNGG	2 cut(s)	255, 458
BseGI	GGATG	7 cut(s)	64, 85, 91, 138, 203, 235, 361
BseJI	GATNNNNATC	2 cut(s)	63, 234
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	293
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	2 cut(s)	306, 353
BspFNI	CGCG	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	255, 458
BssT1I	CCWWGG	2 cut(s)	255, 458
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	159, 277
BstF5I	GGATG	7 cut(s)	64, 85, 91, 138, 203, 235, 361
BstFNI	CGCG	1 cut(s)	240
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 231, 413
BstNSI	RCATGY	1 cut(s)	161
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	259
BtsCI	GGATG	7 cut(s)	64, 85, 91, 138, 203, 235, 361
BtuMI	TCGCGA	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	159, 277
Cfr13I	GGNCC	1 cut(s)	303
CpoI	CGGWCCG	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	24, 144, 244
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	4 cut(s)	158, 226, 374, 401
CviJI	RGCY	4 cut(s)	194, 333, 343, 407
CviKI_1	RGCY	4 cut(s)	194, 333, 343, 407
CviQI	GTAC	3 cut(s)	24, 144, 244
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	384
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	255, 458
Eco47I	GGWCC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	255, 458
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	255, 458
FaeI	CATG	4 cut(s)	161, 229, 377, 404
FatI	CATG	4 cut(s)	157, 225, 373, 400
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	7 cut(s)	71, 92, 98, 125, 190, 242, 368
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	4 cut(s)	161, 229, 377, 404
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	303, 429
Hpy188III	TCNNGA	2 cut(s)	239, 293
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	6 cut(s)	62, 157, 161, 225, 377, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 231, 413
Hsp92II	CATG	4 cut(s)	161, 229, 377, 404
LmnI	GCTCC	2 cut(s)	262, 295
LpnPI	CCDG	7 cut(s)	62, 104, 119, 167, 180, 289, 294
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	5 cut(s)	49, 76, 170, 307, 340
MboII	GAAGA	2 cut(s)	41, 401
MluCI	AATT	3 cut(s)	68, 267, 418
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	30, 76, 145, 253, 328, 397, 456
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	2 cut(s)	329, 422
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	167, 231, 413
NlaIII	CATG	4 cut(s)	161, 229, 377, 404
NruI	TCGCGA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	303
RruI	TCGCGA	1 cut(s)	240
RsaI	GTAC	3 cut(s)	25, 145, 245
RsaNI	GTAC	3 cut(s)	24, 144, 244
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	329, 422
SatI	GCNGC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	303
SetI	ASST	5 cut(s)	156, 196, 257, 367, 448
SfaNI	GCATC	5 cut(s)	49, 76, 170, 307, 340
SinI	GGWCC	1 cut(s)	303
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	68, 267, 418
SsiI	CCGC	2 cut(s)	306, 353
StyI	CCWWGG	2 cut(s)	255, 458
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	3 cut(s)	68, 267, 418
Tru1I	TTAA	2 cut(s)	329, 422
Tru9I	TTAA	2 cut(s)	329, 422
TseI	GCWGC	1 cut(s)	272
TspGWI	ACGGA	2 cut(s)	131, 310
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.