Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

67861901 .. 67862527

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCATAAGGAGGACGGTGAGCAAAGAGAGGAGAATAAGCATATCAAGCGCTTTCATAAGGAGGATGTTGACAACATTGTTATTGTACTGAGTAATGATGATGACGAAGAGGAGGAGGAGAAAGATGCTAAAGAACATGATGGTAATGATGATGGAGATGATGATGATGAGGGGACGGAGTCCGAGGATGATCATAAAGAAAATGAGGACAAGGATATTAGAGAACATGGGCATGGCGATGATGAGGCTGATGAGGAGAGTCACGAAAATGGTGAGGAAAGTGAGGAGGAGGAAGATGACAGTTCTGATGAGGAATCAGATTCATGTTCCGCGCTGGAAAAGAAGCGCAAGAAATGTGAAGATCCTACCTACCAAGGAAATTATCCTAAAAGGGCAAAGACTCCTTTCTTTTTTGGTGCCCCTGGACCGAGAAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.87

Weight (kDa)

4.28

Isoelectric Point (pI)

73.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	421
AlwI	GGATC	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	51, 334, 348
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	29, 284
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	416
BccI	CCATC	2 cut(s)	134, 146
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	183, 373, 421
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	183, 373, 421
BseGI	GGATG	2 cut(s)	70, 193
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	7 cut(s)	44, 125, 128, 131, 269, 299, 302
BseSI	GKGCMC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	190, 361
BspACI	CCGC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	416
BssECI	CCNNGG	3 cut(s)	183, 373, 421
BssMI	GATC	2 cut(s)	190, 361
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	17, 302
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	70, 193
BstFNI	CGCG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	3 cut(s)	51, 334, 348
BstKTI	GATC	2 cut(s)	193, 364
BstMBI	GATC	2 cut(s)	190, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	70, 193
CfoI	GCGC	3 cut(s)	51, 334, 348
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	137, 227, 233, 324
CviJI	RGCY	1 cut(s)	248
CviKI_1	RGCY	1 cut(s)	248
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	2 cut(s)	192, 363
DpnII	GATC	2 cut(s)	190, 361
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	425
Eco47III	AGCGCT	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	140, 230, 236, 327
FaiI	YATR	8 cut(s)	6, 42, 57, 138, 195, 228, 234, 325
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	4 cut(s)	136, 226, 232, 323
FbaI	TGATCA	1 cut(s)	190
FokI	GGATG	2 cut(s)	77, 200
GlaI	GCGC	3 cut(s)	50, 333, 347
HaeII	RGCGCY	1 cut(s)	52
HhaI	GCGC	3 cut(s)	51, 334, 348
Hin1II	CATG	4 cut(s)	140, 230, 236, 327
Hin6I	GCGC	3 cut(s)	49, 332, 346
HinP1I	GCGC	3 cut(s)	49, 332, 346
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	5 cut(s)	179, 259, 314, 320, 400
HphI	GGTGA	2 cut(s)	29, 284
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	184, 307, 319
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	17, 302
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	140, 230, 236, 327
HspAI	GCGC	3 cut(s)	49, 332, 346
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	190, 361
LpnPI	CCDG	3 cut(s)	320, 408, 435
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	2 cut(s)	192, 363
MboI	GATC	2 cut(s)	190, 361
MboII	GAAGA	3 cut(s)	119, 305, 371
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	3 cut(s)	188, 268, 394
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	3 cut(s)	231, 237, 267
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	190, 361
NlaIII	CATG	4 cut(s)	140, 230, 236, 327
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	314, 320
PflFI	GACNNNGTC	1 cut(s)	178
PleI	GAGTC	3 cut(s)	187, 267, 394
PpsI	GAGTC	3 cut(s)	187, 267, 394
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	178
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	3 cut(s)	231, 237, 267
SaqAI	TTAA	1 cut(s)	439
Sau3AI	GATC	2 cut(s)	190, 361
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	3 cut(s)	188, 268, 394
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	3 cut(s)	231, 237, 267
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	17, 302
TasI	AATT	1 cut(s)	379
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	314, 320
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	44, 312
TspGWI	ACGGA	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.