Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Forward (+)

21738301 .. 21743151

Gene Structure 4851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCCGGAAGAAGTCAAAAATAGCGTGCCGACAACCCGTAAACGAATCCTACTTGAGGGACTAGCTGGTTCAGCCTGGTTTTTGGGAGAGCAAGTTGCAATGCAAAGTTTAGGCACCACAGAACCTCAAGTACCCAATATTCCACCGAGGACAATGCTTTCTGATTATAAGCTGACTGATGAGTCAGAAGTCAGGGAAGCACTGAATGGGTACCCCTCTTCGGAATGGCTGGCAAATTCATCCGACTATGCCCACTACAGATATGAGTACATAAGGTACCGCCACTATGAGGACTTACGTGAAGCGGAAGGACAAGATCGAAATCTCGAAGGGGCCAATATAAGGGTAGGAAACATCTCTCCTCAGCCATGGTCAGTGCGAATACCATGCTGGGCAGCTGAAAATGGAAGTAAACTTGTGCGGATACCTCGTGGGCAAGATAGTCTTGATCTACCATTACCTGCTGGTGTGACACATGTAACTGCTGAAGCTACAACCGAGATTTTGGAGCTGAATGCTGGGTTGAATGCCGTACTATTTTCAACTTCACTGGAAGCAAGCATAGAGATCAGGCGCCTACGGCAAGAGATTGAGATATTGAAGAACACCTCGGGAACAACCATTGCAAGTTCGGGTATTGGTGAAGACGTCTTAGCTGATGATGCAGAACATGAGTTTCGCACAAAATTTAAAGATGACATAGGTAGAAAAGGAAAGACCAAAATTGTGATACTAGAAGAGCATGAAGAAGATGAGGAAGAGGAAGAAGAAGAGGAAGATGAAGATGAAGAGGAAGATGAAGAGGAGGATGACGACGATGCTTGGATCGAAGAGAAAGAGGTTGGGGATGAGGACGAGGTTGGGGATGAGGATGAGGAAGCCGATGAGGACGGGGCCGTAACTAAGGGTAATCCGGATGCAGAACAACACTCCACAGACCAAAAACGCAAAGTTGAGAAAATTCTTCGTTCACGTACCCCAAAGAGAAACAAAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.67

Weight (kDa)

4.42

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AasI	GACNNNNNNGTC	1 cut(s)	181
AatII	GACGTC	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	469
Acc65I	GGTACC	2 cut(s)	210, 276
AccB1I	GGYRCC	4 cut(s)	113, 210, 276, 573
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	3 cut(s)	280, 305, 421
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	235, 686, 960
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	2 cut(s)	574, 648
AfaI	GTAC	6 cut(s)	132, 212, 269, 278, 534, 976
AfiI	CCNNNNNNNGG	4 cut(s)	55, 220, 289, 342
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	3 cut(s)	526, 543, 601
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	6 cut(s)	65, 172, 398, 491, 511, 656
AluI	AGCT	6 cut(s)	65, 172, 398, 491, 511, 656
AlwI	GGATC	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	2 cut(s)	333, 894
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	3 cut(s)	235, 686, 960
Asp718I	GGTACC	2 cut(s)	210, 276
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	333, 894
AsuHPI	GGTGA	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	610
BanI	GGYRCC	4 cut(s)	113, 210, 276, 573
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	407
BceAI	ACGGC	3 cut(s)	515, 596, 881
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 369, 403
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	417
BfaI	CTAG	2 cut(s)	62, 734
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	333, 894
BmiI	GGNNCC	6 cut(s)	115, 212, 278, 334, 575, 895
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	3 cut(s)	652, 808, 907
BpiI	GAAGAC	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	74, 111
BsaAI	YACGTR	2 cut(s)	299, 974
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	2 cut(s)	574, 648
BsaJI	CCNNGG	3 cut(s)	146, 368, 609
BsaWI	WCCGGW	1 cut(s)	913
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 220, 289, 342
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	2 cut(s)	105, 621
Bse8I	GATNNNNATC	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	146, 368, 609
BseGI	GGATG	6 cut(s)	239, 814, 853, 871, 877, 922
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	4 cut(s)	55, 220, 289, 342
BseMI	GCAATG	2 cut(s)	105, 621
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	351, 818
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	2 cut(s)	390, 518
BshFI	GGCC	2 cut(s)	335, 896
BshNI	GGYRCC	4 cut(s)	113, 210, 276, 573
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	5, 914
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	55, 220, 289, 342
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	520, 532
BsnI	GGCC	2 cut(s)	335, 896
BsoBI	CYCGRG	1 cut(s)	610
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	316, 448, 567, 825
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	3 cut(s)	280, 305, 421
BspANI	GGCC	2 cut(s)	335, 896
BspCNI	CTCAG	1 cut(s)	376
BspEI	TCCGGA	1 cut(s)	913
BspLI	GGNNCC	6 cut(s)	115, 212, 278, 334, 575, 895
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	732
BspT107I	GGYRCC	4 cut(s)	113, 210, 276, 573
BsrDI	GCAATG	2 cut(s)	105, 621
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	3 cut(s)	146, 368, 609
BssMI	GATC	4 cut(s)	316, 448, 567, 825
BssNI	GRCGYC	2 cut(s)	574, 648
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	7 cut(s)	223, 732, 753, 765, 783, 795, 825
BstACI	GRCGYC	2 cut(s)	574, 648
BstBAI	YACGTR	2 cut(s)	299, 974
BstC8I	GCNNGC	3 cut(s)	26, 231, 559
BstDEI	CTNAG	3 cut(s)	363, 652, 903
BstDSI	CCRYGG	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	6 cut(s)	239, 814, 853, 871, 877, 922
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	4 cut(s)	319, 451, 570, 828
BstMBI	GATC	4 cut(s)	316, 448, 567, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 580, 662
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	335, 896
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	6 cut(s)	239, 814, 853, 871, 877, 922
BtsIMutI	CAGTG	3 cut(s)	200, 381, 548
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	3 cut(s)	26, 231, 559
CfoI	GCGC	1 cut(s)	576
Cfr13I	GGNCC	2 cut(s)	333, 894
Csp6I	GTAC	6 cut(s)	131, 211, 268, 277, 533, 975
CviAII	CATG	5 cut(s)	369, 387, 476, 671, 743
CviQI	GTAC	6 cut(s)	131, 211, 268, 277, 533, 975
DdeI	CTNAG	3 cut(s)	363, 652, 903
DinI	GGCGCC	1 cut(s)	575
DpnI	GATC	4 cut(s)	318, 450, 569, 827
DpnII	GATC	4 cut(s)	316, 448, 567, 825
DraI	TTTAAA	1 cut(s)	691
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eam1104I	CTCTTC	7 cut(s)	223, 732, 753, 765, 783, 795, 825
EarI	CTCTTC	7 cut(s)	223, 732, 753, 765, 783, 795, 825
Eco130I	CCWWGG	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	610
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	368
EgeI	GGCGCC	1 cut(s)	575
EheI	GGCGCC	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	5 cut(s)	372, 390, 479, 674, 746
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	5 cut(s)	368, 386, 475, 670, 742
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	6 cut(s)	226, 821, 860, 878, 884, 929
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	62, 734
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	2 cut(s)	394, 522
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	335, 896
HapII	CCGG	2 cut(s)	5, 914
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	2 cut(s)	574, 648
Hin1II	CATG	5 cut(s)	372, 390, 479, 674, 746
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HinfI	GANTC	2 cut(s)	45, 182
HpaII	CCGG	2 cut(s)	5, 914
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	3 cut(s)	41, 413, 971
Hpy188I	TCNGA	4 cut(s)	163, 187, 223, 244
Hpy188III	TCNNGA	4 cut(s)	326, 446, 612, 914
Hpy8I	GTNNAC	3 cut(s)	41, 413, 971
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	2 cut(s)	302, 323
HpyCH4IV	ACGT	3 cut(s)	298, 648, 973
HpyCH4V	TGCA	5 cut(s)	98, 103, 626, 665, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 580, 662
HpyF3I	CTNAG	3 cut(s)	363, 652, 903
HpySE526I	ACGT	3 cut(s)	298, 648, 973
Hsp92I	GRCGYC	2 cut(s)	574, 648
Hsp92II	CATG	5 cut(s)	372, 390, 479, 674, 746
HspAI	GCGC	1 cut(s)	574
KasI	GGCGCC	1 cut(s)	573
Kpn2I	TCCGGA	1 cut(s)	913
KpnI	GGTACC	2 cut(s)	214, 280
Kzo9I	GATC	4 cut(s)	316, 448, 567, 825
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	3 cut(s)	652, 808, 907
MaeI	CTAG	2 cut(s)	62, 734
MaeII	ACGT	3 cut(s)	298, 648, 973
MaeIII	GTNAC	3 cut(s)	469, 478, 898
MalI	GATC	4 cut(s)	318, 450, 569, 827
MboI	GATC	4 cut(s)	316, 448, 567, 825
MluCI	AATT	4 cut(s)	235, 686, 723, 960
Mly113I	GGCGCC	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	913
MseI	TTAA	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	5, 914
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	2 cut(s)	520, 532
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	71, 580, 662
NarI	GGCGCC	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	316, 448, 567, 825
NlaIII	CATG	5 cut(s)	372, 390, 479, 674, 746
NlaIV	GGNNCC	6 cut(s)	115, 212, 278, 334, 575, 895
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	479
PciI	ACATGT	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	732
PctI	GAATGC	2 cut(s)	520, 532
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	190
PluTI	GGCGCC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	2 cut(s)	299, 974
PscI	ACATGT	1 cut(s)	475
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	74
PspFI	CCCAGC	2 cut(s)	390, 518
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	6 cut(s)	115, 212, 278, 334, 575, 895
PspPI	GGNCC	2 cut(s)	333, 894
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	6 cut(s)	132, 212, 269, 278, 534, 976
RsaNI	GTAC	6 cut(s)	131, 211, 268, 277, 533, 975
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	316, 448, 567, 825
Sau96I	GGNCC	2 cut(s)	333, 894
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	76
SfaNI	GCATC	3 cut(s)	652, 808, 907
SfcI	CTRYAG	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	53, 126
SmoI	CTYRAG	2 cut(s)	53, 126
Sse9I	AATT	4 cut(s)	235, 686, 723, 960
SsiI	CCGC	3 cut(s)	280, 305, 421
SspDI	GGCGCC	1 cut(s)	573
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	62, 734
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	368
TaiI	ACGT	3 cut(s)	301, 651, 976
TaqI	TCGA	3 cut(s)	319, 327, 828
TasI	AATT	4 cut(s)	235, 686, 723, 960
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	3 cut(s)	207, 381, 555
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	5 cut(s)	228, 759, 795, 801, 813
TspRI	CASTG	3 cut(s)	207, 381, 555
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	3 cut(s)	235, 686, 960
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	2 cut(s)	62, 734
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.