Rh6DG199700

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002281
Physical Location & Seq
Reverse (-)
35606907 .. 35607302
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG199700.1

Sequence Viewer

Length: 396 bp
ATGACGCCCAAGGATTTCAGTGCAATAATAGGAATTCCTGTTAGTGGAAAACCACTTGAGTATGACATGGATGCACACAGGAAGAAGGCACATCTTTTGCAGTTATGTGGAAAAAGACTTGCTGACCTTGCAAACCAATCTGTAAAGTACACGCAGGTACGCGATGCTCATTTGGACTGGGTGTTAAAAACCCCGGGTGACGAGGATAAGATGGTCAGAGTCTTCCTTCTATGTTTGTTGGGTTCAACTTTGTTTGCCGGAAGGACAAACACCATCAATCTTTGGTTCCTTCCTAGTTTGAAGGTCATTAGTGAAATTGGGACGTACAATTGGGGTGGGCAAGCACTGTCCTCTCTCTACCTCCATATGGATTCACTTAGTCGTGCAAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

131

Amino Acids

14.67

Weight (kDa)

9.17

Isoelectric Point (pI)

23.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 3 - 128 4.4e-12 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccII CGCG 1 cut(s) 162
AcsI RAATTY 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 149, 159, 326
AfiI CCNNNNNNNGG 2 cut(s) 44, 367
AgsI TTSAA 2 cut(s) 246, 301
Ama87I CYCGRG 1 cut(s) 193
ApoI RAATTY 1 cut(s) 33
AsuC2I CCSGG 2 cut(s) 194, 195
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 214
BccI CCATC 2 cut(s) 205, 281
BcnI CCSGG 2 cut(s) 194, 195
BfaI CTAG 2 cut(s) 294, 394
BfuAI ACCTGC 1 cut(s) 145
BglII AGATCT 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 194, 195
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 194, 195
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 61, 154
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 194, 195
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 9, 192, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 367
Bse1I ACTGG 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 9, 192, 193
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 44, 367
BseNI ACTGG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 194, 258
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 44, 367
BsmFI GGGAC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 1 cut(s) 390
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 287
BspMI ACCTGC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 9, 192, 193
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 393
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 192, 193
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 25, 344
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 342
Cfr9I CCCGGG 1 cut(s) 193
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 148, 158, 325
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 1 cut(s) 67
CviQI GTAC 3 cut(s) 148, 158, 325
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 63, 68, 106, 232, 366, 368
FaqI GGGAC 1 cut(s) 334
FatI CATG 1 cut(s) 66
FauNDI CATATG 1 cut(s) 366
FokI GGATG 1 cut(s) 83
FspBI CTAG 2 cut(s) 294, 394
HapII CCGG 2 cut(s) 194, 258
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 70
HinfI GANTC 2 cut(s) 219, 371
HpaII CCGG 2 cut(s) 194, 258
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 5 cut(s) 79, 236, 255, 295, 299
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 5 cut(s) 23, 74, 100, 131, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 390
LpnPI CCDG 6 cut(s) 51, 64, 140, 163, 207, 271
LweI GCATC 2 cut(s) 61, 154
MaeI CTAG 2 cut(s) 294, 394
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 2 cut(s) 94, 214
MfeI CAATTG 1 cut(s) 328
MflI RGATCY 1 cut(s) 390
MluCI AATT 3 cut(s) 33, 315, 328
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 3 cut(s) 196, 361, 371
MseI TTAA 1 cut(s) 185
MspI CCGG 2 cut(s) 194, 258
MspR9I CCNGG 2 cut(s) 194, 195
MunI CAATTG 1 cut(s) 328
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 2 cut(s) 194, 195
NdeI CATATG 1 cut(s) 366
NdeII GATC 1 cut(s) 390
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 371
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 3 cut(s) 149, 159, 326
RsaNI GTAC 3 cut(s) 148, 158, 325
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 390
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 194, 195
SetI ASST 5 cut(s) 129, 159, 306, 326, 363
SfaNI GCATC 2 cut(s) 61, 154
SmaI CCCGGG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 3 cut(s) 33, 315, 328
SspMI CTAG 2 cut(s) 294, 394
StyD4I CCNGG 2 cut(s) 192, 193
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 326
TasI AATT 3 cut(s) 33, 315, 328
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 2 cut(s) 25, 351
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspMI CCCGGG 1 cut(s) 193
TspRI CASTG 2 cut(s) 25, 351
XapI RAATTY 1 cut(s) 33
XmaI CCCGGG 1 cut(s) 193
XspI CTAG 2 cut(s) 294, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.