Rh4AG135900

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002281
Physical Location & Seq
Reverse (-)
29854118 .. 29856093
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG135900.1

Sequence Viewer

Length: 951 bp
ATGGTCCGAGTCTTCCTTCTGTGTTTCTTGGGTTCAACTCTGTTTGCCGAAAGGACAAACACCATCAATCTTTGGTTCCTTCCTAGTTTGAAGGTGATTAGTGAAATTGGGACATACAATTGGAGTGGACCAGCACTGTCCTCTCTCTACCTCCATATGGATTCACCAAGTCGTGGAAAGATCAAGAGCATTGCTGGATTCTGGAGAGCTTGGGAAATATGGGCTTGCGAGTACTTGAAACAGTTGGCTCTGTTACATCCTTTGAGCGGAGATGACCACTGGCCTCAGGCAACTTGTTGGTTTGGTGGAAAGGATATGGTCAGAGACTCTTGGGTGACCACTGACCCATCTACTTCGCATTACGTTCTATCTAGCATTCAAGCAACGAAGCTAAGGATTTTACTAGAAGAGCCAGCTGGTTACGCTTGGTACTTGGGGGAAAGAGTTTCCGTTCAGAGCCTTAACACCACTTCCCCCCGTGTACCAAGACTACCACCTAGATCTATGCTGCGTGATTATCGCCCCCTTCCTGAAGATATTTCTCTTAGTGTCATTGGTTGGGATGCAAATCAATTCTTAATGGATGAGGATGCTGACTACGACAAATATCAGAATGAGTATCTGATTCAAAACCAGGAACACCACCCCAATGAAGAATCCATGGAGAACTGTAACCATTCTATGCCTCATGAAGATGGAAGTTCAGACGCCATCAGTAGCATTACAATGCCTCCACGCACCATAATTGTTGTAGGCAATATCCTTCCTCCCGAGCATCGGACCGCTGGTTGTTCCTCCGTTTCTTTAAGCCCCCTTCAGCATGATGATGCGGATGACATAGGTGATGTGCATGCAACTAACACCGATGAGTGTCAGCATGAGGTTGATGGTGAAAATTTAAGTCCGACCGATAACACTCAACCTCCCAAAAAATCAAGGAGGGTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
PMD

Protein Analysis

316

Amino Acids

35.77

Weight (kDa)

5.1

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 3 - 83 3.3e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 3 cut(s) 267, 783, 830
AcsI RAATTY 1 cut(s) 895
AcuI CTGAAG 2 cut(s) 552, 800
AcyI GRCGYC 1 cut(s) 708
AfaI GTAC 3 cut(s) 233, 431, 483
AfiI CCNNNNNNNGG 4 cut(s) 157, 173, 266, 777
AgsI TTSAA 5 cut(s) 36, 91, 238, 380, 629
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 3 cut(s) 209, 391, 416
AluI AGCT 3 cut(s) 209, 391, 416
Alw26I GTCTC 1 cut(s) 318
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 895
AspS9I GGNCC 3 cut(s) 4, 128, 780
AsuHPI GGTGA 5 cut(s) 106, 156, 346, 854, 902
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 3 cut(s) 4, 128, 780
AxyI CCTNAGG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 495
BccI CCATC 5 cut(s) 71, 355, 689, 719, 881
BciT130I CCWGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 4 cut(s) 84, 372, 404, 498
BglII AGATCT 1 cut(s) 500
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 3 cut(s) 4, 128, 780
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 3 cut(s) 4, 128, 780
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 4 cut(s) 553, 580, 784, 817
BpiI GAAGAC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 660
BsaXI ACNNNNNCTCC 4 cut(s) 715, 745, 907, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 173, 266, 777
Bse1I ACTGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 5 cut(s) 256, 568, 589, 595, 838
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 4 cut(s) 157, 173, 266, 777
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 495
Bsh1285I CGRYCG 1 cut(s) 909
BshFI GGCC 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 909
BsiHKCI CYCGRG 1 cut(s) 770
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 4 cut(s) 157, 173, 266, 777
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 770
Bsp143I GATC 2 cut(s) 180, 500
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 3 cut(s) 267, 783, 830
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 298
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 402
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 2 cut(s) 180, 500
BssNI GRCGYC 1 cut(s) 708
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 3 cut(s) 138, 243, 671
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 708
BstC8I GCNNGC 3 cut(s) 226, 414, 852
BstDEI CTNAG 3 cut(s) 285, 392, 545
BstDSI CCRYGG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 5 cut(s) 256, 568, 589, 595, 838
BstKTI GATC 2 cut(s) 183, 503
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 180, 500
BstMCI CGRYCG 1 cut(s) 909
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 854
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 5 cut(s) 256, 568, 589, 595, 838
BtsIMutI CAGTG 3 cut(s) 134, 277, 339
Cac8I GCNNGC 3 cut(s) 226, 414, 852
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 4, 128, 780
CpoI CGGWCCG 1 cut(s) 780
CseI GACGC 1 cut(s) 716
Csp6I GTAC 3 cut(s) 232, 430, 482
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CspI CGGWCCG 1 cut(s) 780
CviAII CATG 5 cut(s) 661, 689, 821, 851, 878
CviJI RGCY 9 cut(s) 209, 224, 248, 283, 391, 412, 416, 459, 810
CviKI_1 RGCY 9 cut(s) 209, 224, 248, 283, 391, 412, 416, 459, 810
CviQI GTAC 3 cut(s) 232, 430, 482
DdeI CTNAG 3 cut(s) 285, 392, 545
DpnI GATC 2 cut(s) 182, 502
DpnII GATC 2 cut(s) 180, 500
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 660
Eco47I GGWCC 3 cut(s) 4, 128, 780
Eco57I CTGAAG 2 cut(s) 552, 800
Eco81I CCTNAGG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 770
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 5 cut(s) 664, 692, 824, 854, 881
FaqI GGGAC 1 cut(s) 124
FatI CATG 5 cut(s) 660, 688, 820, 850, 877
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 5 cut(s) 243, 575, 596, 602, 845
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 4 cut(s) 84, 372, 404, 498
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 283
HgaI GACGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 708
Hin1II CATG 5 cut(s) 664, 692, 824, 854, 881
HinfI GANTC 6 cut(s) 9, 161, 198, 326, 625, 656
HphI GGTGA 5 cut(s) 106, 156, 346, 854, 902
Hpy166II GTNNAC 2 cut(s) 128, 482
Hpy188I TCNGA 8 cut(s) 8, 323, 456, 612, 624, 706, 780, 906
Hpy188III TCNNGA 5 cut(s) 184, 202, 530, 689, 770
Hpy8I GTNNAC 2 cut(s) 128, 482
HpyAV CCTTC 6 cut(s) 26, 85, 89, 536, 773, 824
HpyCH4III ACNGT 3 cut(s) 138, 243, 671
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 566, 850, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 285, 392, 545
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 708
Hsp92II CATG 5 cut(s) 664, 692, 824, 854, 881
Kzo9I GATC 2 cut(s) 180, 500
LguI GCTCTTC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 4 cut(s) 553, 580, 784, 817
MaeI CTAG 4 cut(s) 84, 372, 404, 498
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 4 cut(s) 252, 334, 419, 671
MalI GATC 2 cut(s) 182, 502
MbiI CCGCTC 1 cut(s) 267
MboI GATC 2 cut(s) 180, 500
MboII GAAGA 5 cut(s) 4, 419, 545, 665, 704
MfeI CAATTG 1 cut(s) 118
MflI RGATCY 1 cut(s) 500
MluCI AATT 5 cut(s) 105, 118, 572, 744, 895
MlyI GAGTC 2 cut(s) 18, 320
MmeI TCCRAC 1 cut(s) 929
MseI TTAA 4 cut(s) 462, 578, 806, 899
MslI CAYNNNNRTG 4 cut(s) 648, 693, 725, 825
MspA1I CMGCKG 2 cut(s) 416, 785
MspR9I CCNGG 1 cut(s) 635
MunI CAATTG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 422
NcoI CCATGG 1 cut(s) 660
NdeI CATATG 1 cut(s) 156
NdeII GATC 2 cut(s) 180, 500
NlaIII CATG 5 cut(s) 664, 692, 824, 854, 881
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 854
PaeI GCATGC 1 cut(s) 854
PagI TCATGA 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 4 cut(s) 161, 198, 625, 656
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 2 cut(s) 17, 320
PpsI GAGTC 2 cut(s) 17, 320
Psp6I CCWGG 1 cut(s) 633
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 3 cut(s) 4, 128, 780
PsuI RGATCY 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 233, 431, 483
RsaNI GTAC 3 cut(s) 232, 430, 482
RseI CAYNNNNRTG 4 cut(s) 648, 693, 725, 825
Rsr2I CGGWCCG 1 cut(s) 780
RsrII CGGWCCG 1 cut(s) 780
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 462, 578, 806, 899
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 2 cut(s) 180, 500
Sau96I GGNCC 3 cut(s) 4, 128, 780
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 2 cut(s) 18, 320
ScrFI CCNGG 1 cut(s) 635
SfaNI GCATC 4 cut(s) 553, 580, 784, 817
SinI GGWCC 3 cut(s) 4, 128, 780
SmiMI CAYNNNNRTG 4 cut(s) 648, 693, 725, 825
SphI GCATGC 1 cut(s) 854
Sse9I AATT 5 cut(s) 105, 118, 572, 744, 895
SsiI CCGC 3 cut(s) 267, 783, 830
SspMI CTAG 4 cut(s) 84, 372, 404, 498
StyD4I CCNGG 1 cut(s) 633
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 3 cut(s) 138, 243, 671
TaiI ACGT 1 cut(s) 366
TaqII GACCGA 1 cut(s) 923
TasI AATT 5 cut(s) 105, 118, 572, 744, 895
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 4 cut(s) 161, 198, 625, 656
Tru1I TTAA 4 cut(s) 462, 578, 806, 899
Tru9I TTAA 4 cut(s) 462, 578, 806, 899
TscAI CASTG 3 cut(s) 141, 284, 346
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 666, 705
TspGWI ACGGA 2 cut(s) 439, 787
TspRI CASTG 3 cut(s) 141, 284, 346
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 3 cut(s) 4, 128, 780
XapI RAATTY 1 cut(s) 895
XceI RCATGY 1 cut(s) 854
XspI CTAG 4 cut(s) 84, 372, 404, 498
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.