Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

21365104 .. 21366595

Gene Structure 1492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCGGAAGAAGTCAAAAATAGTGTCCCGGTAACCCGTAAACGAATCCTACTTGAGGGACCAGATGGTTCAACCTGGTTTTTGGGAAAGCGAGTCATAATGCAAAGTTTAGGCACCACAGAACCTCAAGTAACCAAAATTCCACCGAGGACAATGTTTTTTGATTATAAGCTCATTGATGAGTCAGAAGTCAAGGAAGCACTGAATGGGTACCCCGCTTCAAAATGGTTTGCAAATTCATCCGACTATGTCCAGTACAGAGATGAGTACATAAGGTACCGCCACTATGAGGACTTAAGTGAAGCGGTAACTGCTGAAGCTGCAACCAAGATTTTGGAGCTGAATGCTGGGTTGAATGCCGTACTATTTTCAACTTCATTGGAAGCAAGCATAGAGATCAGGCGCCTACGGCAAGAGATTGAGACATTGAAGAACACCTCGGGAACAACCATTGCAAGTTCAGGAATTGGTCAGGACGTCTTAGCTGATGATGCAGAACATGAGTTTCGCACAAAATTTAAACATGACATGGGTAGAAAAGGAAAGACCAAAATTGTGATACCAAAAGAGCATGAAGAAGATGAGGAAGAAGAAGAAGAACAGGAAGAAAAACAGGAAGATGAAGAGGAAGATGAAGAGGAAAATGAAGACGAAGCTTGGATTGAAGAGAAAGAGGTTAGGGATGAGGATGAGGAAGCCGATGAGGACGGGGCCGCAACTAAGGGTAATCCGGATGCAGAACAACACTCCACAGACCAAAATGCAAACTTGAGAAAAGTCTTCGTTCACTTTCCCCAAAGAGAAAGAAAACCAAGTGAATTATGGATACGATTCAATTTTTCGAATCATTGGTCCGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

33.23

Weight (kDa)

4.6

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AatII	GACGTC	1 cut(s)	480
Acc65I	GGTACC	2 cut(s)	210, 276
AccB1I	GGYRCC	4 cut(s)	113, 210, 276, 402
AccIII	TCCGGA	1 cut(s)	730
AciI	CCGC	4 cut(s)	216, 280, 305, 714
AcsI	RAATTY	3 cut(s)	138, 235, 515
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	2 cut(s)	403, 477
AfaI	GTAC	5 cut(s)	212, 257, 269, 278, 363
AfiI	CCNNNNNNNGG	2 cut(s)	55, 289
AflII	CTTAAG	1 cut(s)	295
AgsI	TTSAA	7 cut(s)	72, 222, 355, 372, 430, 665, 835
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	5 cut(s)	172, 320, 340, 485, 656
AluI	AGCT	5 cut(s)	172, 320, 340, 485, 656
Alw26I	GTCTC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	439
Aor13HI	TCCGGA	1 cut(s)	730
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	3 cut(s)	138, 235, 515
ArsI	GACNNNNNNTTYG	3 cut(s)	9, 41, 836
Asp718I	GGTACC	2 cut(s)	210, 276
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	3 cut(s)	59, 711, 852
AsuC2I	CCSGG	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	842
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	59, 852
BanI	GGYRCC	4 cut(s)	113, 210, 276, 402
BbsI	GAAGAC	2 cut(s)	654, 772
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	2 cut(s)	344, 425
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	819
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	406
BfrI	CTTAAG	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	2 cut(s)	321, 714
BlsI	GCNGC	2 cut(s)	322, 715
Bme1390I	CCNGG	2 cut(s)	29, 76
Bme18I	GGWCC	2 cut(s)	59, 852
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	59, 711, 852
BmiI	GGNNCC	6 cut(s)	60, 115, 212, 278, 404, 712
BmrFI	CCNGG	2 cut(s)	29, 76
BmsI	GCATC	2 cut(s)	481, 724
BpiI	GAAGAC	2 cut(s)	654, 772
Bpu14I	TTCGAA	1 cut(s)	842
BpuEI	CTTGAG	3 cut(s)	74, 111, 790
BpuMI	CCSGG	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	403, 477
BsaJI	CCNNGG	2 cut(s)	146, 438
BsaWI	WCCGGW	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 289
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	730
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	146, 438
BseGI	GGATG	4 cut(s)	239, 688, 694, 739
BseLI	CCNNNNNNNGG	2 cut(s)	55, 289
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	1 cut(s)	713
BshNI	GGYRCC	4 cut(s)	113, 210, 276, 402
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	5, 29, 731
BslFI	GGGAC	2 cut(s)	11, 72
BslI	CCNNNNNNNGG	2 cut(s)	55, 289
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	11, 72
BsmI	GAATGC	2 cut(s)	349, 361
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	842
Bsp13I	TCCGGA	1 cut(s)	730
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	216, 280, 305, 714
BspANI	GGCC	1 cut(s)	713
BspEI	TCCGGA	1 cut(s)	730
BspLI	GGNNCC	6 cut(s)	60, 115, 212, 278, 404, 712
BspT104I	TTCGAA	1 cut(s)	842
BspT107I	GGYRCC	4 cut(s)	113, 210, 276, 402
BspTI	CTTAAG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	146, 438
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	2 cut(s)	403, 477
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	3 cut(s)	618, 630, 660
BstACI	GRCGYC	2 cut(s)	403, 477
BstAFI	CTTAAG	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	481, 720
BstEII	GGTNACC	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	239, 688, 694, 739
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 320, 409, 491
BstNI	CCWGG	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	27, 74
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	2 cut(s)	654, 772
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	4 cut(s)	239, 688, 694, 739
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	59, 711, 852
CsiI	ACCWGGT	1 cut(s)	74
Csp6I	GTAC	5 cut(s)	211, 256, 268, 277, 362
CviAII	CATG	4 cut(s)	500, 524, 529, 572
CviJI	RGCY	7 cut(s)	172, 320, 340, 485, 656, 698, 713
CviKI_1	RGCY	7 cut(s)	172, 320, 340, 485, 656, 698, 713
CviQI	GTAC	5 cut(s)	211, 256, 268, 277, 362
DdeI	CTNAG	2 cut(s)	481, 720
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
DraI	TTTAAA	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	618, 630, 660
EarI	CTCTTC	3 cut(s)	618, 630, 660
Eco47I	GGWCC	2 cut(s)	59, 852
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	74
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
FaeI	CATG	4 cut(s)	503, 527, 532, 575
FaqI	GGGAC	2 cut(s)	11, 72
FatI	CATG	4 cut(s)	499, 523, 528, 571
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	321, 714
FokI	GGATG	4 cut(s)	226, 695, 701, 746
Fsp4HI	GCNGC	2 cut(s)	321, 714
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	2 cut(s)	321, 714
GsaI	CCCAGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	3 cut(s)	5, 29, 731
HhaI	GCGC	1 cut(s)	405
Hin1I	GRCGYC	2 cut(s)	403, 477
Hin1II	CATG	4 cut(s)	503, 527, 532, 575
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	5 cut(s)	45, 93, 182, 831, 844
HpaII	CCGG	3 cut(s)	5, 29, 731
Hpy166II	GTNNAC	2 cut(s)	41, 787
Hpy188I	TCNGA	2 cut(s)	187, 244
Hpy188III	TCNNGA	4 cut(s)	441, 462, 473, 731
Hpy8I	GTNNAC	2 cut(s)	41, 787
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	7 cut(s)	103, 233, 323, 455, 494, 737, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 320, 409, 491
HpyF3I	CTNAG	2 cut(s)	481, 720
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	2 cut(s)	403, 477
Hsp92II	CATG	4 cut(s)	503, 527, 532, 575
HspAI	GCGC	1 cut(s)	403
KasI	GGCGCC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	730
KpnI	GGTACC	2 cut(s)	214, 280
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	481, 724
MabI	ACCWGGT	1 cut(s)	74
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	31, 130, 307
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MluCI	AATT	7 cut(s)	138, 235, 465, 515, 552, 818, 835
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	102, 191
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	730
MseI	TTAA	2 cut(s)	296, 519
MspCI	CTTAAG	1 cut(s)	295
MspI	CCGG	3 cut(s)	5, 29, 731
MspR9I	CCNGG	2 cut(s)	29, 76
Mva1269I	GAATGC	2 cut(s)	349, 361
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	311, 320, 409, 491
NarI	GGCGCC	1 cut(s)	403
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	4 cut(s)	503, 527, 532, 575
NlaIV	GGNNCC	6 cut(s)	60, 115, 212, 278, 404, 712
NspV	TTCGAA	1 cut(s)	842
PctI	GAATGC	2 cut(s)	349, 361
PfeI	GAWTC	3 cut(s)	45, 831, 844
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	322, 715
PleI	GAGTC	2 cut(s)	101, 190
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	2 cut(s)	101, 190
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	6 cut(s)	60, 115, 212, 278, 404, 712
PspPI	GGNCC	3 cut(s)	59, 711, 852
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	5 cut(s)	212, 257, 269, 278, 363
RsaNI	GTAC	5 cut(s)	211, 256, 268, 277, 362
SaqAI	TTAA	2 cut(s)	296, 519
SatI	GCNGC	2 cut(s)	321, 714
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	3 cut(s)	59, 711, 852
SchI	GAGTC	2 cut(s)	102, 191
ScrFI	CCNGG	2 cut(s)	29, 76
SexAI	ACCWGGT	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	481, 724
SfoI	GGCGCC	1 cut(s)	404
SfuI	TTCGAA	1 cut(s)	842
SinI	GGWCC	2 cut(s)	59, 852
SmlI	CTYRAG	4 cut(s)	53, 126, 295, 769
SmoI	CTYRAG	4 cut(s)	53, 126, 295, 769
Sse9I	AATT	7 cut(s)	138, 235, 465, 515, 552, 818, 835
SsiI	CCGC	4 cut(s)	216, 280, 305, 714
SspDI	GGCGCC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	27, 74
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	842
TasI	AATT	7 cut(s)	138, 235, 465, 515, 552, 818, 835
TatI	WGTACW	2 cut(s)	255, 267
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	45, 831, 844
Tru1I	TTAA	2 cut(s)	296, 519
Tru9I	TTAA	2 cut(s)	296, 519
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	6 cut(s)	228, 366, 588, 636, 648, 660
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	59, 852
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	3 cut(s)	138, 235, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.