Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

39780593 .. 39781835

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGCGTGATTATCGCCCCCTTCCTGAAGATATTTCTCTTGGTGTCATTAGTTGGGTTGCAAATCAATTCTTAATGGACAAGGATGCCGACTACAGAAAATACCGGAATGACCATCTGGTTTATAAGCATCAAACAATTTGTACCGATGAGGTCCAAAACCAAGAACACCAGCCCAATGAAGAATCCATGGAGAACTGTAACCGTTCTATGCCTCATGAAGATGGAAGTTCAGACGCAATCAGTAGCATTACAATGCCTCCACGCACCATAACTGTTGTCGGGTGGGAGAGTGGAGATTGCGAAGTTTTGGAGATTCCTAGGGGATTGAAAACCCCTACCCTTCCCTTGCCATCATTAGCTAAATATAGGTTGACGTACCCTTCATTTGTTTTGCAAGAGCAAATTGCTGCTAGCAATATCCTTCCTCCCGAGCATCGGATCGCTGGTCGTTCCTCCGTTTTTTTAAGCCCCCTTCAAAATGATGATGCGGATGACATTGGTGATGTGCATGCAACTAACACTGATGAGTGTCGGCATGAGGTTGATGGTGCAAATTTAAGTCTGACCGATAACACTCAACCTCTCAAAAAACCAAGCATGGTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.92

Weight (kDa)

4.85

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	145, 380
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	331, 479
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
AlwI	GGATC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	556
AspA2I	CCTAGG	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	515
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	4 cut(s)	123, 218, 361, 542
BfaI	CTAG	2 cut(s)	321, 414
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	1 cut(s)	411
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	154
BmsI	GCATC	4 cut(s)	76, 139, 445, 478
BmtI	GCTAGC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	189, 320
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	189, 320
BseGI	GGATG	2 cut(s)	91, 499
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	491
BspHI	TCATGA	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	189, 320
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	189, 320
Bst4CI	ACNGT	3 cut(s)	200, 206, 277
BstC8I	GCNNGC	2 cut(s)	415, 513
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	91, 499
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	91, 499
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	415, 513
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	144, 379
CviAII	CATG	5 cut(s)	190, 218, 512, 539, 601
CviJI	RGCY	3 cut(s)	175, 362, 471
CviKI_1	RGCY	3 cut(s)	175, 362, 471
CviQI	GTAC	2 cut(s)	144, 379
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	189, 320
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	189, 320
ErhI	CCWWGG	2 cut(s)	189, 320
FaeI	CATG	5 cut(s)	193, 221, 515, 542, 604
FaiI	YATR	9 cut(s)	126, 191, 212, 219, 272, 369, 513, 540, 602
FatI	CATG	5 cut(s)	189, 217, 511, 538, 600
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	2 cut(s)	98, 506
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	2 cut(s)	321, 414
GluI	GCNGC	1 cut(s)	411
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	193, 221, 515, 542, 604
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	185, 316
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	3 cut(s)	235, 441, 567
Hpy188III	TCNNGA	3 cut(s)	26, 218, 431
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	5 cut(s)	32, 353, 393, 434, 485
HpyCH4III	ACNGT	3 cut(s)	200, 206, 277
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	5 cut(s)	62, 397, 511, 515, 554
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	193, 221, 515, 542, 604
Kzo9I	GATC	1 cut(s)	441
LpnPI	CCDG	5 cut(s)	39, 104, 119, 185, 432
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	4 cut(s)	76, 139, 445, 478
MaeI	CTAG	2 cut(s)	321, 414
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	3 cut(s)	41, 194, 233
MluCI	AATT	4 cut(s)	68, 138, 405, 556
MnlI	CCTC	7 cut(s)	145, 225, 270, 438, 466, 535, 594
MseI	TTAA	3 cut(s)	74, 467, 560
MslI	CAYNNNNRTG	2 cut(s)	222, 254
MspI	CCGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	441
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	193, 221, 515, 542, 604
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	185, 316
PkrI	GCNGC	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	145, 380
RsaNI	GTAC	2 cut(s)	144, 379
RseI	CAYNNNNRTG	2 cut(s)	222, 254
SaqAI	TTAA	3 cut(s)	74, 467, 560
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	6 cut(s)	156, 364, 374, 380, 546, 586
SfaNI	GCATC	4 cut(s)	76, 139, 445, 478
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	222, 254
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	4 cut(s)	68, 138, 405, 556
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	321, 414
StyI	CCWWGG	2 cut(s)	189, 320
TaaI	ACNGT	3 cut(s)	200, 206, 277
TaiI	ACGT	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	4 cut(s)	68, 138, 405, 556
TfiI	GAWTC	2 cut(s)	185, 316
Tru1I	TTAA	3 cut(s)	74, 467, 560
Tru9I	TTAA	3 cut(s)	74, 467, 560
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	195, 234, 375
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	1 cut(s)	515
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	321, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.