Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002281

Physical Location & Seq

Genomic Coordinates Reverse (-)

27961045 .. 27963380

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0254000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAAACCTCCAGCGTTTCACATGCTTGGGTTGATAGAATTCAGGATTGGAGCCTTTACTTGACAGCACAGATAGATGACTGTGGCAGGTATGCAATATGTGGTGCATATGGTAGCTGCAACATTAACAACTCCCCTTCTTGTGGATGCTTGAAAGGTTTTGCGCCAAAGTCCCCCCTAGACTGGGAGATGGCCGATTGGTCACATGGCTGTGTCATGCTAATTTGGATATTAGAGGAGAAGGAAGTGGCCGGGTGCATACTCTGGCTTGGAGAACTGATTGATACTCAAGAATTCTCTGATGCTGGGCAGGACATAGATATAAGGATGGCTGCCTCTGAGCTAGTGACATACAGAAGCTTGAAGGGAAAGACAAAAGTTGAGGTCATAGTTCTATCTGTATTAGCTGTGGGGATAATTCTTCTAGGCCTATGCTTGATACTACATTTATACAAGAGGAAGAAGAAGAAGAAGCAGATTAAAAGAAAAGGAAATATGTTGCATACTCCAGAGCAAGACAGCAACAACGAATGCCAAGATGAACATCTAGAGCTACCATTATTTGGTTTTAGTACTATAGCAGATGCCACAAATAATTGTTCTGGGTGCATGAAAATTGTGAATAATAACAAGAATAACATCCTACAGGGAAAACTGATGGAGGGGCAAGAAATAGGGGTGAAAAGGCTTTCAAGAAGTTCGATACAAGGAATCAAAGAGTTCAAGAATGAACACCGCAACCTTGTGAAGCTTCTGGGATGTTGCACTGAAGCCCGAGAGAGTAATTATTTTTCAAAAACAGCCTTATCCTTCAAAACTTGGGTTGATGAACAGCAAAGTATAACTCTGGATTGGCCTAGGCATTTCCACATTATCAATGGGATAGCTAGATGGCTACTTTATCTTCATCAAGATTCCAGACTGAGGATAATCCATCGCGATCTAAAAGCTAGCAATGTCTTACTAGACTATGAACTGAATCCAAAATTTTCAGATTTTGGCATTGCTAGGAGTTTCGGAGGAGATGAAACTGAAGCAAATACGAAGAGAGTGGTTGGAACATACGGTTACATGTCTCAGGAATATGCAATTGATGGTGTCTTCTCGGTGAATTCTGATGTTTTTTGCTTTGGTGTTTTGGTACTTGAGATAGTGAGTGGAAAGAAGAACAGAGGATATTTTCACCCAGGCCACAAGCTTAACCTTCTTGGACATGCCTGGAGGCTCTTCAAAGAAGGCAAGCCATTTCAAATGATGCATACATCTATAAAGCACAAAGACACAAGCAGTATGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

48.93

Weight (kDa)

8.11

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	7 - 58	3.7e-14	S-locus glycoprotein domain
Pkinase	PF00069	201 - 389	1.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	239 - 390	2.3e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002281)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G070400_v2.0.a1 Prupe.3G160200_v2.0.a1 Prupe.4G269000_v2.0.a1 Prupe.4G270200_v2.0.a1 Prupe.5G238200_v2.0.a1 Prupe.7G047500_v2.0.a1
rosa_laevigata	RLG00000008586 RLG00000008587 RLG00000015554
rosa_multiflora	Rmu_co8197244.1_g000001 Rmu_sc0000317.1_g000008 Rmu_sc0005789.1_g000029
rosa_roxburghii	Rroxscaffold_3G00230640 Rroxscaffold_7G00217400 Rroxscaffold_7G00217420
rosa_rugosa	Rorug05G0254000
rosa_samantha	Rh1CG049500 Rh1DG053800 Rh2AG299300 Rh2AG311800 Rh2BG320000 Rh2BG320100 Rh2BG394600 Rh2BG394700 Rh2CG298800 Rh2CG298900 Rh2DG323200 Rh2DG336100 Rh2DG336200 Rh3BG265200 Rh4AG135900 Rh4AG149400 Rh4AG149500 Rh4CG144100 Rh5CG364900 Rh6BG005800 Rh6CG003300 Rh6DG003100 Rh6DG199600 Rh6DG199700 Rh6DG199800
rosa_wichuraiana	Rw2G031720 Rw6G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccII	CGCG	1 cut(s)	939
AciI	CCGC	1 cut(s)	736
AcoI	YGGCCR	2 cut(s)	192, 249
AcsI	RAATTY	4 cut(s)	39, 293, 986, 1111
AcuI	CTGAAG	2 cut(s)	789, 1053
AfaI	GTAC	2 cut(s)	574, 1143
AfiI	CCNNNNNNNGG	5 cut(s)	143, 183, 184, 563, 924
AflIII	ACRYGT	1 cut(s)	1071
AgsI	TTSAA	8 cut(s)	154, 364, 693, 724, 795, 814, 1231, 1250
AjnI	CCWGG	2 cut(s)	1186, 1217
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	9 cut(s)	117, 343, 360, 407, 553, 751, 887, 950, 1198
AluI	AGCT	9 cut(s)	117, 343, 360, 407, 553, 751, 887, 950, 1198
Alw26I	GTCTC	1 cut(s)	1080
Ama87I	CYCGRG	1 cut(s)	774
AoxI	GGCC	5 cut(s)	192, 249, 427, 854, 1189
ApeKI	GCWGC	2 cut(s)	117, 332
ApoI	RAATTY	4 cut(s)	39, 293, 986, 1111
AspA2I	CCTAGG	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	691, 1120, 1175
AsuNHI	GCTAGC	1 cut(s)	950
AvaI	CYCGRG	1 cut(s)	774
AvrII	CCTAGG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	1093
BbvI	GCAGC	2 cut(s)	104, 319
BccI	CCATC	6 cut(s)	184, 322, 652, 885, 942, 1088
BciT130I	CCWGG	2 cut(s)	1188, 1219
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	1080
BfmI	CTRYAG	2 cut(s)	576, 644
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	118, 333
BlnI	CCTAGG	1 cut(s)	857
BlsI	GCNGC	2 cut(s)	119, 334
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	3 cut(s)	253, 1188, 1219
BmeT110I	CYCGRG	1 cut(s)	774
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	253, 1188, 1219
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	137, 292, 574, 1245
BmtI	GCTAGC	1 cut(s)	954
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	1093
BpmI	CTGGAG	2 cut(s)	492, 1240
BpuEI	CTTGAG	2 cut(s)	273, 1166
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	857, 1186
Bsc4I	CCNNNNNNNGG	5 cut(s)	143, 183, 184, 563, 924
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	961, 1002
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	1188, 1219
BseDI	CCNNGG	2 cut(s)	857, 1186
BseGI	GGATG	4 cut(s)	152, 333, 639, 764
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	5 cut(s)	143, 183, 184, 563, 924
BseMI	GCAATG	2 cut(s)	961, 1002
BseMII	CTCAG	3 cut(s)	330, 914, 1091
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	251, 1035
BseXI	GCAGC	2 cut(s)	104, 319
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	5 cut(s)	194, 251, 429, 856, 1191
BsiHKCI	CYCGRG	1 cut(s)	774
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	5 cut(s)	143, 183, 184, 563, 924
BsmAI	GTCTC	1 cut(s)	1080
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	5 cut(s)	194, 251, 429, 856, 1191
BsoBI	CYCGRG	1 cut(s)	774
Bsp143I	GATC	1 cut(s)	940
Bsp68I	TCGCGA	1 cut(s)	939
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	5 cut(s)	194, 251, 429, 856, 1191
BspCNI	CTCAG	3 cut(s)	331, 915, 1090
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	954
BspQI	GCTCTTC	1 cut(s)	1232
BsrDI	GCAATG	2 cut(s)	961, 1002
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	857, 1186
BssMI	GATC	1 cut(s)	940
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	1188, 1219
Bst4CI	ACNGT	2 cut(s)	83, 1067
Bst6I	CTCTTC	2 cut(s)	1040, 1232
BstC8I	GCNNGC	2 cut(s)	952, 1241
BstDEI	CTNAG	3 cut(s)	339, 923, 1077
BstF5I	GGATG	4 cut(s)	152, 333, 639, 764
BstFNI	CGCG	1 cut(s)	939
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	943
BstMAI	GTCTC	1 cut(s)	1080
BstMBI	GATC	1 cut(s)	940
BstNI	CCWGG	2 cut(s)	1188, 1219
BstNSI	RCATGY	3 cut(s)	26, 1075, 1217
BstSCI	CCNGG	3 cut(s)	251, 1186, 1217
BstSFI	CTRYAG	2 cut(s)	576, 644
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	2 cut(s)	104, 319
BstV2I	GAAGAC	1 cut(s)	1093
BsuRI	GGCC	5 cut(s)	194, 251, 429, 856, 1191
BtgZI	GCGATG	1 cut(s)	920
BtsCI	GGATG	4 cut(s)	152, 333, 639, 764
BtsIMutI	CAGTG	1 cut(s)	765
BtuMI	TCGCGA	1 cut(s)	939
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	952, 1241
CfoI	GCGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	573, 1142
CviAII	CATG	6 cut(s)	23, 206, 217, 610, 1072, 1214
CviQI	GTAC	2 cut(s)	573, 1142
DdeI	CTNAG	3 cut(s)	339, 923, 1077
DpnI	GATC	1 cut(s)	942
DpnII	GATC	1 cut(s)	940
EaeI	YGGCCR	2 cut(s)	192, 249
Eam1104I	CTCTTC	2 cut(s)	1040, 1232
EarI	CTCTTC	2 cut(s)	1040, 1232
Eco130I	CCWWGG	1 cut(s)	857
Eco147I	AGGCCT	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	789, 1053
Eco88I	CYCGRG	1 cut(s)	774
EcoRI	GAATTC	3 cut(s)	39, 293, 1111
EcoRII	CCWGG	2 cut(s)	1186, 1217
EcoT14I	CCWWGG	1 cut(s)	857
EcoT22I	ATGCAT	1 cut(s)	1260
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	6 cut(s)	26, 209, 220, 613, 1075, 1217
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	6 cut(s)	22, 205, 216, 609, 1071, 1213
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	118, 333
FokI	GGATG	4 cut(s)	159, 340, 626, 771
Fsp4HI	GCNGC	2 cut(s)	118, 333
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	118, 333
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	492, 1240
HaeIII	GGCC	5 cut(s)	194, 251, 429, 856, 1191
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	26, 209, 220, 613, 1075, 1217
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	3 cut(s)	358, 749, 1196
HinfI	GANTC	3 cut(s)	711, 914, 979
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	3 cut(s)	691, 1120, 1175
Hpy188I	TCNGA	5 cut(s)	301, 340, 994, 1019, 1117
HpyAV	CCTTC	6 cut(s)	147, 235, 358, 820, 1214, 1229
HpyCH4III	ACNGT	2 cut(s)	83, 1067
HpyCH4V	TGCA	9 cut(s)	95, 107, 120, 258, 502, 609, 765, 1088, 1258
HpyF3I	CTNAG	3 cut(s)	339, 923, 1077
Hsp92II	CATG	6 cut(s)	26, 209, 220, 613, 1075, 1217
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	940
LguI	GCTCTTC	1 cut(s)	1232
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	2 cut(s)	104, 319
LweI	GCATC	4 cut(s)	137, 292, 574, 1245
MaeIII	GTNAC	3 cut(s)	201, 346, 1067
MalI	GATC	1 cut(s)	942
MboI	GATC	1 cut(s)	940
MfeI	CAATTG	1 cut(s)	1089
MmeI	TCCRAC	1 cut(s)	1036
Mph1103I	ATGCAT	1 cut(s)	1260
MseI	TTAA	3 cut(s)	126, 480, 1200
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	3 cut(s)	253, 1188, 1219
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	2 cut(s)	1188, 1219
MvnI	CGCG	1 cut(s)	939
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	940
NheI	GCTAGC	1 cut(s)	950
NlaIII	CATG	6 cut(s)	26, 209, 220, 613, 1075, 1217
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	201, 346
NruI	TCGCGA	1 cut(s)	939
NsiI	ATGCAT	1 cut(s)	1260
NspI	RCATGY	3 cut(s)	26, 1075, 1217
PceI	AGGCCT	1 cut(s)	429
PciI	ACATGT	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	1232
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	711, 914, 979
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	119, 334
PscI	ACATGT	1 cut(s)	1071
Psp6I	CCWGG	2 cut(s)	1186, 1217
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	1186, 1217
PspN4I	GGNNCC	1 cut(s)	53
RruI	TCGCGA	1 cut(s)	939
RsaI	GTAC	2 cut(s)	574, 1143
RsaNI	GTAC	2 cut(s)	573, 1142
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	1232
SaqAI	TTAA	3 cut(s)	126, 480, 1200
SatI	GCNGC	2 cut(s)	118, 333
Sau3AI	GATC	1 cut(s)	940
ScaI	AGTACT	1 cut(s)	574
ScrFI	CCNGG	3 cut(s)	253, 1188, 1219
SfaNI	GCATC	4 cut(s)	137, 292, 574, 1245
SfcI	CTRYAG	2 cut(s)	576, 644
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	288, 1145
SmoI	CTYRAG	2 cut(s)	288, 1145
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	736
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	251, 1186, 1217
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	2 cut(s)	83, 1067
TaqI	TCGA	1 cut(s)	701
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	711, 914, 979
Tru1I	TTAA	3 cut(s)	126, 480, 1200
Tru9I	TTAA	3 cut(s)	126, 480, 1200
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	2 cut(s)	201, 346
TseI	GCWGC	2 cut(s)	117, 332
Tsp45I	GTSAC	2 cut(s)	201, 346
TspDTI	ATGAA	7 cut(s)	555, 626, 744, 843, 896, 987, 1041
TspRI	CASTG	1 cut(s)	772
Van91I	CCANNNNNTGG	1 cut(s)	563
XapI	RAATTY	4 cut(s)	39, 293, 986, 1111
XbaI	TCTAGA	1 cut(s)	547
XceI	RCATGY	3 cut(s)	26, 1075, 1217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	875
XmaJI	CCTAGG	1 cut(s)	857
ZrmI	AGTACT	1 cut(s)	574
Zsp2I	ATGCAT	1 cut(s)	1260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.