Rh2DG323200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002281
Physical Location & Seq
Forward (+)
40568743 .. 40569177
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG323200.1

Sequence Viewer

Length: 435 bp
ATGAGGCTAATGGGAGACTTCAGTGAATGTGCTAAATGTCTTGCTCTCCTCCCCAAAGAGATCCAGCAATACGTAAGAAATGCTGGGTTTGGACGGTTCATGGATGTCGTGATTGCCCAAAGAGAGCAGTGTCAAGAAAAAGCGCTTTTAAGGGCTTTGTATGAGCAGTGGTGGGACACGACTCACACTTTTCACTTTGATTTTATCGGGGAGCTAACAATAACACCGACGGACTTCAGTGCCATTACTGGTCTGAATTGTTCTGGGAAGAACCTCAAGTTTGACACCAAGTTCTGGGATAACTTAGAGAAGGTAACCAGAACATATGGTGAACCCATGGCAACCATTCTAGAAGGAGGAAAGGTTGATTGTAAGAAACAAAAAGAGCATATGAGAATTGGCAATGCACTGACAAAGTCAAGACTATACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.63

Weight (kDa)

8.27

Isoelectric Point (pI)

19.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 34 - 93 3.5e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 4, 220
AfeI AGCGCT 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 214, 432
AluI AGCT 2 cut(s) 214, 432
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 144
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 409
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 336
BspPI GGATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 60
BstPI GGTNACC 1 cut(s) 313
BstSNI TACGTA 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 134, 173
BtsIMutI CAGTG 5 cut(s) 28, 134, 173, 244, 407
CfoI GCGC 1 cut(s) 145
CviAII CATG 2 cut(s) 100, 337
CviJI RGCY 4 cut(s) 7, 155, 214, 432
CviKI_1 RGCY 4 cut(s) 7, 155, 214, 432
DdeI CTNAG 1 cut(s) 304
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 336
Eco47III AGCGCT 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 4, 220
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 103, 340
FaiI YATR 8 cut(s) 101, 162, 325, 327, 338, 390, 392, 427
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 99, 336
FauNDI CATATG 2 cut(s) 325, 390
FokI GGATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 146
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 103, 340
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 181
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 109, 134, 350, 420
Hpy8I GTNNAC 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 304, 347
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 304
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 103, 340
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 69, 77, 234, 249, 280, 331
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 60
MluCI AATT 2 cut(s) 256, 396
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 3 cut(s) 59, 284, 350
MseI TTAA 1 cut(s) 149
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 2 cut(s) 325, 390
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 103, 340
PflFI GACNNNGTC 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 294
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 175
SetI ASST 6 cut(s) 75, 216, 276, 315, 366, 434
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SnaBI TACGTA 1 cut(s) 73
Sse9I AATT 2 cut(s) 256, 396
SspMI CTAG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 75
TasI AATT 2 cut(s) 256, 396
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 5 cut(s) 28, 134, 173, 244, 414
TspDTI ATGAA 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 5 cut(s) 28, 134, 173, 244, 414
Tth111I GACNNNGTC 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 294
XbaI TCTAGA 1 cut(s) 349
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.