Rh6DG003100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002281
Physical Location & Seq
Forward (+)
419862 .. 423353
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG003100.1

Sequence Viewer

Length: 1362 bp
ATGAAAATTTACAATAAACCCAACAAGATGAAAACGTTGGTTGGGGAGCCACTGGCAAACTTGGGAAAGAAAAGAGTGACTTATCCCTGGATACAGTACTTGTATCAAAACTATGAATGTTCTACCGCTAAAGAAGAGGAAATTTTAACACGAGTATTCATCCTCGTGCTTCTTGGGTCAACAATTTTTCGCGATAAAGGTTATAGGGTTTACTTGTATTATCTCCCGAGTTTGAAGAAGATCAGCAGTATTGCTAAATATAATTGGGGAGGAAGTGCCCTTGCTTTTCTGTATTGCAATATGGATGCCCTTTGTCGAGGCTTGACTAAAAGTTCCGGCGGATACTCTAAAGCGTGGGAGATCTGGGCATGCGAATACATACCGTCTTTGACCCGAGCAAGTACTGGTGCCAACACATTCCCAAGGGCACTATGTTGGACTCCACAGAATGTGGTATCCCATAGTCTTGCAGAGTATAGGGTGATTCTCAAAGACCTCAAGTTTGAACAGATTAATTTCTCACCCTGGGGTCCGGATGAGGAACTTCCATCTTATTGTGTATCTAGCCTGTTGTCGAATAAGAAGAGAATCTTGTTAGAGAGTCTCGCTGGCAGAGCATGCAACAATGTGCCCTCAGATGAAGAAATTAAACTTGGATTTGATGGATTTGATGCAACTCAATACTTAGATGACAAGGCTGCAATGACTTACCAAGATTTTCGGGAGCAGTTTCTGTCATACAACTACTCCACCGAGCAAGAGGTTGTGGGTGTTCGACTTCCAGCTGACATTGATTCAGTGAGTGCATCTACAGCAGCCATGTTCTTGCAAGCGTTTGGTGATACTATGAACCTTCTGAAAAAAAAGTTACAAAAGGACGTTGCTGGATACGATGACGATGAAGACTACGAAGAAGAGGATGTTGGCAATCAACAAAGAGGAGAATTGAATAAGCAAATCAAGAGCTTTCATAAGGAGGATGTTGACAACATTGTTATTGTACTGAGTGATGATGATGACGAGGAGGAGGAGGAGGAGAAGGATGCTAAAGAACATGATGATAATGATGATGGTGATGATGATGATGAGGGGAAGGAGTCCCAGGATGGTCATCAAGAAAATGAGGACAAGGATATTAGCGAACATCAGGGGCATGGCGATGATGAGGCTGACGAGGAGACTCACGAAAATGGTGAGGAAAGTGAGGAGGAGGAAGATGACAGTTCTGATGAGGAATCAGATTCTTGTTCCGCGCTGGAAAAGAAGCGCAAGAAATGTGAAGATCCTCCCTACCAAGGAAATGATCCTAAAAGGGCAAAGACTCCTTTCTTTTTTGGTGCCCCTGGACCGAGAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

453

Amino Acids

51.51

Weight (kDa)

4.5

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 21 - 185 4.1e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 407, 1337
AccII CGCG 2 cut(s) 192, 1253
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 3 cut(s) 126, 339, 1251
AclI AACGTT 1 cut(s) 35
AclWI GGATC 2 cut(s) 1277, 1298
AcsI RAATTY 2 cut(s) 6, 141
AfaI GTAC 3 cut(s) 98, 403, 1002
AfiI CCNNNNNNNGG 1 cut(s) 1295
AgsI TTSAA 3 cut(s) 235, 506, 949
AjnI CCWGG 4 cut(s) 86, 524, 1101, 1342
AjuI GAANNNNNNNTTGG 4 cut(s) 636, 668, 906, 938
AluBI AGCT 2 cut(s) 785, 966
AluI AGCT 2 cut(s) 785, 966
Alw26I GTCTC 2 cut(s) 608, 1172
AlwI GGATC 2 cut(s) 1277, 1298
AlwNI CAGNNNCTG 1 cut(s) 733
Ama87I CYCGRG 2 cut(s) 226, 393
Aor13HI TCCGGA 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 698, 815
ApoI RAATTY 2 cut(s) 6, 141
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 2 cut(s) 1255, 1269
AspS9I GGNCC 2 cut(s) 530, 1346
AsuHPI GGTGA 5 cut(s) 493, 513, 851, 1085, 1205
AvaI CYCGRG 2 cut(s) 226, 393
AvaII GGWCC 2 cut(s) 530, 1346
BaeGI GKGCMC 4 cut(s) 280, 430, 633, 1342
BanI GGYRCC 2 cut(s) 407, 1337
BauI CACGAG 2 cut(s) 150, 164
BbsI GAAGAC 1 cut(s) 909
BbvI GCAGC 2 cut(s) 685, 827
BccI CCATC 4 cut(s) 556, 656, 1064, 1100
BciT130I CCWGG 4 cut(s) 88, 526, 1103, 1344
BciVI GTATCC 4 cut(s) 84, 335, 466, 881
BcoDI GTCTC 2 cut(s) 608, 1172
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 810
BfuI GTATCC 4 cut(s) 84, 335, 466, 881
BglII AGATCT 1 cut(s) 360
BisI GCNGC 2 cut(s) 699, 816
BlsI GCNGC 2 cut(s) 700, 817
BmcAI AGTACT 2 cut(s) 98, 403
Bme1390I CCNGG 4 cut(s) 88, 526, 1103, 1344
Bme18I GGWCC 2 cut(s) 530, 1346
BmeT110I CYCGRG 2 cut(s) 226, 393
BmgT120I GGNCC 2 cut(s) 530, 1346
BmiI GGNNCC 4 cut(s) 48, 409, 531, 1339
BmrFI CCNGG 4 cut(s) 88, 526, 1103, 1344
BmsI GCATC 4 cut(s) 295, 661, 815, 1033
BpiI GAAGAC 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 1110
BsaJI CCNNGG 7 cut(s) 86, 422, 524, 525, 1101, 1294, 1342
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 1295
Bse1I ACTGG 2 cut(s) 57, 409
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 1110
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 4 cut(s) 88, 526, 1103, 1344
BseDI CCNNGG 7 cut(s) 86, 422, 524, 525, 1101, 1294, 1342
BseGI GGATG 7 cut(s) 159, 310, 541, 925, 985, 1048, 1111
BseJI GATNNNNATC 1 cut(s) 1110
BseLI CCNNNNNNNGG 1 cut(s) 1295
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 2 cut(s) 648, 995
BseNI ACTGG 2 cut(s) 57, 409
BseRI GAGGAG 9 cut(s) 954, 1037, 1040, 1043, 1046, 1049, 1190, 1220, 1223
BseSI GKGCMC 4 cut(s) 280, 430, 633, 1342
BseXI GCAGC 2 cut(s) 685, 827
Bsh1236I CGCG 2 cut(s) 192, 1253
BshNI GGYRCC 2 cut(s) 407, 1337
BsiHKCI CYCGRG 2 cut(s) 226, 393
BsiSI CCGG 2 cut(s) 336, 533
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 1 cut(s) 1295
BsmAI GTCTC 2 cut(s) 608, 1172
BsmFI GGGAC 1 cut(s) 1084
BsoBI CYCGRG 2 cut(s) 226, 393
Bsp1286I GDGCHC 4 cut(s) 280, 430, 633, 1342
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 4 cut(s) 240, 360, 1282, 1303
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 3 cut(s) 126, 339, 1251
BspCNI CTCAG 2 cut(s) 647, 996
BspEI TCCGGA 1 cut(s) 532
BspFNI CGCG 2 cut(s) 192, 1253
BspLI GGNNCC 4 cut(s) 48, 409, 531, 1339
BspPI GGATC 2 cut(s) 1277, 1298
BspT107I GGYRCC 2 cut(s) 407, 1337
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 2 cut(s) 57, 409
BssECI CCNNGG 7 cut(s) 86, 422, 524, 525, 1101, 1294, 1342
BssMI GATC 4 cut(s) 240, 360, 1282, 1303
BssSI CACGAG 2 cut(s) 150, 164
BssT1I CCWWGG 2 cut(s) 422, 1294
Bst2BI CACGAG 2 cut(s) 150, 164
Bst2UI CCWGG 4 cut(s) 88, 526, 1103, 1344
Bst4CI ACNGT 3 cut(s) 96, 384, 1223
Bst6I CTCTTC 3 cut(s) 129, 578, 909
BstAPI GCANNNNNTGC 1 cut(s) 618
BstC8I GCNNGC 4 cut(s) 370, 610, 619, 831
BstDEI CTNAG 3 cut(s) 634, 685, 1004
BstF5I GGATG 7 cut(s) 159, 310, 541, 925, 985, 1048, 1111
BstFNI CGCG 2 cut(s) 192, 1253
BstHHI GCGC 2 cut(s) 1255, 1269
BstKTI GATC 4 cut(s) 243, 363, 1285, 1306
BstMAI GTCTC 2 cut(s) 608, 1172
BstMBI GATC 4 cut(s) 240, 360, 1282, 1303
BstMWI GCNNNNNNNGC 3 cut(s) 614, 618, 812
BstNI CCWGG 4 cut(s) 88, 526, 1103, 1344
BstNSI RCATGY 2 cut(s) 372, 621
BstSCI CCNGG 4 cut(s) 86, 524, 1101, 1342
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 4 cut(s) 280, 430, 633, 1342
BstUI CGCG 2 cut(s) 192, 1253
BstV1I GCAGC 2 cut(s) 685, 827
BstV2I GAAGAC 1 cut(s) 909
BstX2I RGATCY 2 cut(s) 360, 1282
BstYI RGATCY 2 cut(s) 360, 1282
BsuI GTATCC 4 cut(s) 84, 335, 466, 881
BtgZI GCGATG 1 cut(s) 1173
BtsCI GGATG 7 cut(s) 159, 310, 541, 925, 985, 1048, 1111
BtsIMutI CAGTG 2 cut(s) 50, 804
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 4 cut(s) 370, 610, 619, 831
CaiI CAGNNNCTG 1 cut(s) 733
CfoI GCGC 2 cut(s) 1255, 1269
Cfr13I GGNCC 2 cut(s) 530, 1346
Csp6I GTAC 3 cut(s) 97, 402, 1001
CviAII CATG 5 cut(s) 369, 618, 820, 1055, 1154
CviJI RGCY 8 cut(s) 49, 321, 567, 698, 785, 818, 966, 1169
CviKI_1 RGCY 8 cut(s) 49, 321, 567, 698, 785, 818, 966, 1169
CviQI GTAC 3 cut(s) 97, 402, 1001
DdeI CTNAG 3 cut(s) 634, 685, 1004
DpnI GATC 4 cut(s) 242, 362, 1284, 1305
DpnII GATC 4 cut(s) 240, 360, 1282, 1303
Eam1104I CTCTTC 3 cut(s) 129, 578, 909
EarI CTCTTC 3 cut(s) 129, 578, 909
EciI GGCGGA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 422, 1294
Eco47I GGWCC 2 cut(s) 530, 1346
Eco88I CYCGRG 2 cut(s) 226, 393
EcoRII CCWGG 4 cut(s) 86, 524, 1101, 1342
EcoT14I CCWWGG 2 cut(s) 422, 1294
ErhI CCWWGG 2 cut(s) 422, 1294
FaeI CATG 5 cut(s) 372, 621, 823, 1058, 1157
FalI AAGNNNNNCTT 4 cut(s) 64, 96, 575, 607
FaqI GGGAC 1 cut(s) 1084
FatI CATG 5 cut(s) 368, 617, 819, 1054, 1153
Fnu4HI GCNGC 2 cut(s) 699, 816
FokI GGATG 7 cut(s) 146, 317, 548, 932, 992, 1055, 1118
Fsp4HI GCNGC 2 cut(s) 699, 816
FspBI CTAG 1 cut(s) 564
GlaI GCGC 2 cut(s) 1254, 1268
GluI GCNGC 2 cut(s) 699, 816
HapII CCGG 2 cut(s) 336, 533
HhaI GCGC 2 cut(s) 1255, 1269
Hin1II CATG 5 cut(s) 372, 621, 823, 1058, 1157
Hin6I GCGC 2 cut(s) 1253, 1267
HinP1I GCGC 2 cut(s) 1253, 1267
HincII GTYRAC 2 cut(s) 180, 985
HindII GTYRAC 2 cut(s) 180, 985
HpaII CCGG 2 cut(s) 336, 533
HphI GGTGA 5 cut(s) 493, 513, 851, 1085, 1205
Hpy166II GTNNAC 3 cut(s) 180, 211, 985
Hpy188I TCNGA 4 cut(s) 637, 858, 1228, 1240
Hpy188III TCNNGA 7 cut(s) 191, 226, 533, 722, 961, 1115, 1184
Hpy8I GTNNAC 3 cut(s) 180, 211, 985
HpyAV CCTTC 3 cut(s) 863, 1033, 1087
HpyCH4III ACNGT 3 cut(s) 96, 384, 1223
HpyCH4IV ACGT 2 cut(s) 35, 879
HpyCH4V TGCA 7 cut(s) 297, 470, 621, 674, 701, 806, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 614, 618, 812
HpyF3I CTNAG 3 cut(s) 634, 685, 1004
HpySE526I ACGT 2 cut(s) 35, 879
Hsp92II CATG 5 cut(s) 372, 621, 823, 1058, 1157
HspAI GCGC 2 cut(s) 1253, 1267
Kpn2I TCCGGA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 240, 360, 1282, 1303
LmnI GCTCC 2 cut(s) 46, 724
Lsp1109I GCAGC 2 cut(s) 685, 827
LweI GCATC 4 cut(s) 295, 661, 815, 1033
MaeI CTAG 1 cut(s) 564
MaeII ACGT 2 cut(s) 35, 879
MaeIII GTNAC 2 cut(s) 76, 867
MalI GATC 4 cut(s) 242, 362, 1284, 1305
MboI GATC 4 cut(s) 240, 360, 1282, 1303
MflI RGATCY 2 cut(s) 360, 1282
MhlI GDGCHC 4 cut(s) 280, 430, 633, 1342
MluCI AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 944
MlyI GAGTC 5 cut(s) 433, 610, 1106, 1174, 1315
MmeI TCCRAC 1 cut(s) 416
MroI TCCGGA 1 cut(s) 532
MseI TTAA 4 cut(s) 146, 513, 648, 1360
MslI CAYNNNNRTG 3 cut(s) 164, 1158, 1188
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 2 cut(s) 336, 533
MspR9I CCNGG 4 cut(s) 88, 526, 1103, 1344
MvaI CCWGG 4 cut(s) 88, 526, 1103, 1344
MvnI CGCG 2 cut(s) 192, 1253
MwoI GCNNNNNNNGC 3 cut(s) 614, 618, 812
NdeII GATC 4 cut(s) 240, 360, 1282, 1303
NlaIII CATG 5 cut(s) 372, 621, 823, 1058, 1157
NlaIV GGNNCC 4 cut(s) 48, 409, 531, 1339
NmuCI GTSAC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 192
NspI RCATGY 2 cut(s) 372, 621
PaeI GCATGC 2 cut(s) 372, 621
PasI CCCWGGG 1 cut(s) 525
PfeI GAWTC 5 cut(s) 484, 588, 794, 1235, 1241
PkrI GCNGC 2 cut(s) 700, 817
PleI GAGTC 5 cut(s) 433, 609, 1105, 1174, 1315
PpsI GAGTC 5 cut(s) 433, 609, 1105, 1174, 1315
PshBI ATTAAT 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 35
Psp6I CCWGG 4 cut(s) 86, 524, 1101, 1342
PspGI CCWGG 4 cut(s) 86, 524, 1101, 1342
PspN4I GGNNCC 4 cut(s) 48, 409, 531, 1339
PspPI GGNCC 2 cut(s) 530, 1346
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 360, 1282
PvuII CAGCTG 1 cut(s) 785
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 3 cut(s) 98, 403, 1002
RsaNI GTAC 3 cut(s) 97, 402, 1001
RseI CAYNNNNRTG 3 cut(s) 164, 1158, 1188
SaqAI TTAA 4 cut(s) 146, 513, 648, 1360
SatI GCNGC 2 cut(s) 699, 816
Sau3AI GATC 4 cut(s) 240, 360, 1282, 1303
Sau96I GGNCC 2 cut(s) 530, 1346
ScaI AGTACT 2 cut(s) 98, 403
SchI GAGTC 5 cut(s) 433, 610, 1106, 1174, 1315
ScrFI CCNGG 4 cut(s) 88, 526, 1103, 1344
SduI GDGCHC 4 cut(s) 280, 430, 633, 1342
SetI ASST 8 cut(s) 38, 202, 498, 765, 787, 855, 882, 968
SfaNI GCATC 4 cut(s) 295, 661, 815, 1033
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 2 cut(s) 530, 1346
SmiMI CAYNNNNRTG 3 cut(s) 164, 1158, 1188
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SphI GCATGC 2 cut(s) 372, 621
Sse9I AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 944
SsiI CCGC 3 cut(s) 126, 339, 1251
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 4 cut(s) 86, 524, 1101, 1342
StyI CCWWGG 2 cut(s) 422, 1294
TaaI ACNGT 3 cut(s) 96, 384, 1223
TaiI ACGT 2 cut(s) 38, 882
TaqI TCGA 3 cut(s) 316, 575, 775
TasI AATT 7 cut(s) 6, 141, 183, 262, 514, 645, 944
TatI WGTACW 3 cut(s) 96, 401, 1000
TfiI GAWTC 5 cut(s) 484, 588, 794, 1235, 1241
Tru1I TTAA 4 cut(s) 146, 513, 648, 1360
Tru9I TTAA 4 cut(s) 146, 513, 648, 1360
TscAI CASTG 2 cut(s) 57, 804
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 698, 815
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 8 cut(s) 17, 44, 129, 148, 654, 863, 915, 959
TspRI CASTG 2 cut(s) 57, 804
VpaK11BI GGWCC 2 cut(s) 530, 1346
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 2 cut(s) 6, 141
XceI RCATGY 2 cut(s) 372, 621
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 2 cut(s) 98, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.