Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002928

Physical Location & Seq

Genomic Coordinates Forward (+)

26027254 .. 26033066

Gene Structure 5813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G289800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAAGCGGAAGGCAGGTCCGCAGAAAGCACAGCACAAATGGAAGAGGAAGCTGTTCGTTGCGCTTTTGATGGGCTTTTGCTTCGGGACGTTGGTGTTGCTGATGCACACTCAGTACAGTCGGATTATGACACTCGCTTCGTTGCATACTCAGCTCACTCAACCCCCCAAGGTCGCCTTCTTGTTCATCGCTCGCAATCGCCTTCCCTTGGACCTGCTTTGGGATGTTTTCTTTCAGGGAGGGGAGAGTAGGTTTTCAATTTATGTTCACTCTAGGCCTGGGTTTCTGTTCAACAAGGCCACCACCAGATCGGTTTTTTTCTTGAATCGTCAAGTCAATGATAGTATACAGGTAGATTGGGGAGAAGCAAGCATGATTGAGGCTGAGCGTATATTACTGAAGCATGCACTTGAGGATCCTCTTAATCAACGCTTTGCCTTTCTTTCTGATAGCTGCATTCCTCTTTACAGTTTCAGCTATATATATGACTACATTATGTCAACAAGAACCAGCTTTGTAGACAGCTTTGCCGATACGAAAGAGGGCCGCTATAATCCCAAAATGAATCCTGTTATTCCTGTTCATAACTGGAGAAAAGGATCTCAGTGGGTTGTTTTGACCAGGAAGCATGCTGAGGTTGTAGTGAAAGACAATACAGTCTTTCCTATGTTTCAACAGCATTGCAAGACGAAGTCGCTACCTGAGTTTTGGCGGGATCGTCCCATTCCTGCTGATACATCCAAGGAGCACAATTGTATACCAGACGAGCATTATGTTCAGACATTACTGGCTCAAGAAGGCCTTGAAGGAGAAATCACGCGTAGATCACTGACACACTCGTCATGGGATTTATCATCCTCTAAAGACCGTGAACGCCGTGGATGGCACCCTGTGACTTACAAATATTCAGATGCTACTCCTATGCTTATTAAATCTATAAAGGAGATAGATAATGTCTACTATGAGACTGAATACCGGAGAGAATGGTGTAGTACCAAGGGCAAACCATCCAAATGCTTTCTTTTTGCACGAAAATTTACCCGGCCTGCTGCTCTCAGGCTTCTTAACACGACTGCACTGGAACTCAAACGGAGCAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

368

Amino Acids

42.99

Weight (kDa)

9.63

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14550 AT5G14550 AT5G14550 AT5G14550
fragaria_vesca	FvH4_6g51390 FvH4_6g51390
malus_domestica	MD09G1028600.v1.1 MD17G1030200.v1.1
prunus_persica	Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1 Prupe.3G289800_v2.0.a1
pyrus_communis	pycom111g02270 pycom17g02760
rosa_chinensis	RchiOBHm_Chr2g0105161 RchiOBHm_Chr2g0107551 RchiOBHm_Chr2g0129161 RchiOBHm_Chr2g0173071 RchiOBHm_Chr3g0491531
rosa_laevigata	RLG00000014988 RLG00000022155
rosa_multiflora	Rmu_sc0008633.1_g000003 Rmu_sc0010388.1_g000002 Rmu_sc0011236.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079270 Rroxscaffold_7G00191080
rosa_rugosa	Rorug02G0564900 Rorug02G0565000
rosa_samantha	Rh2AG644800 Rh2BG655600 Rh2CG199900 Rh2CG620700 Rh2DG668900 Rh3AG299000 Rh4AG023800 Rh5AG168600 Rh5AG303700 Rh7AG291800
rosa_wichuraiana	Rw2G052960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	656, 838
Acc36I	ACCTGC	2 cut(s)	5, 222
AccB1I	GGYRCC	1 cut(s)	885
AccI	GTMKAC	4 cut(s)	346, 519, 757, 957
AccII	CGCG	1 cut(s)	820
AciI	CCGC	4 cut(s)	7, 20, 547, 712
AclWI	GGATC	4 cut(s)	410, 423, 607, 723
AcsI	RAATTY	1 cut(s)	1034
AcuI	CTGAAG	1 cut(s)	419
AdeI	CACNNNGTG	1 cut(s)	892
AfaI	GTAC	2 cut(s)	116, 994
AfiI	CCNNNNNNNGG	2 cut(s)	208, 220
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	5 cut(s)	258, 292, 325, 674, 806
AjnI	CCWGG	2 cut(s)	277, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	52, 154, 453, 477, 513, 525
AluI	AGCT	6 cut(s)	52, 154, 453, 477, 513, 525
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	959
AlwI	GGATC	4 cut(s)	410, 423, 607, 723
AoxI	GGCC	5 cut(s)	275, 297, 544, 799, 1043
ApeKI	GCWGC	2 cut(s)	453, 1049
ApoI	RAATTY	1 cut(s)	1034
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	17, 211, 544
AsuC2I	CCSGG	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	17, 211
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	750
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	440, 1036
BccI	CCATC	3 cut(s)	64, 876, 1015
BceAI	ACGGC	1 cut(s)	861
BciT130I	CCWGG	2 cut(s)	279, 622
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	1 cut(s)	959
BfaI	CTAG	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	5, 222
BisI	GCNGC	3 cut(s)	454, 547, 1050
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	3 cut(s)	455, 548, 1051
Bme1390I	CCNGG	3 cut(s)	279, 622, 1042
Bme18I	GGWCC	2 cut(s)	17, 211
BmgT120I	GGNCC	3 cut(s)	17, 211, 544
BmiI	GGNNCC	2 cut(s)	417, 887
BmrFI	CCNGG	3 cut(s)	279, 622, 1042
BmsI	GCATC	2 cut(s)	93, 901
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	431, 777
BpuMI	CCSGG	1 cut(s)	1042
BsaJI	CCNNGG	6 cut(s)	168, 207, 278, 741, 877, 996
BsaWI	WCCGGW	1 cut(s)	975
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 220
Bse1I	ACTGG	3 cut(s)	593, 792, 1083
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	2 cut(s)	279, 622
BseDI	CCNNGG	6 cut(s)	168, 207, 278, 741, 877, 996
BseGI	GGATG	5 cut(s)	229, 737, 854, 887, 1007
BseLI	CCNNNNNNNGG	2 cut(s)	208, 220
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	7 cut(s)	125, 164, 375, 617, 624, 693, 1069
BseNI	ACTGG	3 cut(s)	593, 792, 1083
BseXI	GCAGC	2 cut(s)	440, 1036
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	1 cut(s)	820
BshFI	GGCC	5 cut(s)	277, 299, 546, 801, 1045
BshNI	GGYRCC	1 cut(s)	885
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	2 cut(s)	976, 1042
BslFI	GGGAC	2 cut(s)	100, 705
BslI	CCNNNNNNNGG	2 cut(s)	208, 220
BsmAI	GTCTC	1 cut(s)	959
BsmFI	GGGAC	2 cut(s)	100, 705
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	5 cut(s)	277, 299, 546, 801, 1045
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	5 cut(s)	308, 415, 599, 715, 824
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	4 cut(s)	7, 20, 547, 712
BspANI	GGCC	5 cut(s)	277, 299, 546, 801, 1045
BspCNI	CTCAG	7 cut(s)	124, 163, 376, 616, 625, 694, 1068
BspFNI	CGCG	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	417, 887
BspMI	ACCTGC	2 cut(s)	5, 222
BspPI	GGATC	4 cut(s)	410, 423, 607, 723
BspT107I	GGYRCC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	593, 792, 1083
BssECI	CCNNGG	6 cut(s)	168, 207, 278, 741, 877, 996
BssMI	GATC	5 cut(s)	308, 415, 599, 715, 824
BssNAI	GTATAC	2 cut(s)	347, 758
BssT1I	CCWWGG	4 cut(s)	168, 207, 741, 996
Bst1107I	GTATAC	2 cut(s)	347, 758
Bst2UI	CCWGG	2 cut(s)	279, 622
Bst4CI	ACNGT	4 cut(s)	119, 470, 658, 869
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	5 cut(s)	193, 370, 405, 630, 1047
BstDEI	CTNAG	7 cut(s)	111, 150, 384, 603, 633, 702, 1055
BstDSI	CCRYGG	1 cut(s)	877
BstF5I	GGATG	5 cut(s)	229, 737, 854, 887, 1007
BstFNI	CGCG	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	5 cut(s)	311, 418, 602, 718, 827
BstMAI	GTCTC	1 cut(s)	959
BstMBI	GATC	5 cut(s)	308, 415, 599, 715, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	279, 622
BstNSI	RCATGY	2 cut(s)	407, 632
BstSCI	CCNGG	3 cut(s)	277, 620, 1040
BstUI	CGCG	1 cut(s)	820
BstV1I	GCAGC	2 cut(s)	440, 1036
BstX2I	RGATCY	2 cut(s)	415, 599
BstYI	RGATCY	2 cut(s)	415, 599
BstZ17I	GTATAC	2 cut(s)	347, 758
BsuRI	GGCC	5 cut(s)	277, 299, 546, 801, 1045
BtgI	CCRYGG	1 cut(s)	877
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	229, 737, 854, 887, 1007
BtsIMutI	CAGTG	3 cut(s)	611, 827, 1076
BveI	ACCTGC	2 cut(s)	5, 222
Cac8I	GCNNGC	5 cut(s)	193, 370, 405, 630, 1047
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	17, 211, 544
Csp6I	GTAC	2 cut(s)	115, 993
CviAII	CATG	4 cut(s)	373, 404, 629, 843
CviQI	GTAC	2 cut(s)	115, 993
DdeI	CTNAG	7 cut(s)	111, 150, 384, 603, 633, 702, 1055
DpnI	GATC	5 cut(s)	310, 417, 601, 717, 826
DpnII	GATC	5 cut(s)	308, 415, 599, 715, 824
DraIII	CACNNNGTG	1 cut(s)	892
DrdI	GACNNNNNNGTC	2 cut(s)	656, 838
DseDI	GACNNNNNNGTC	2 cut(s)	656, 838
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	4 cut(s)	168, 207, 741, 996
Eco147I	AGGCCT	2 cut(s)	277, 801
Eco47I	GGWCC	2 cut(s)	17, 211
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	277, 620
EcoT14I	CCWWGG	4 cut(s)	168, 207, 741, 996
ErhI	CCWWGG	4 cut(s)	168, 207, 741, 996
FaeI	CATG	4 cut(s)	376, 407, 632, 846
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 786, 818
FaqI	GGGAC	2 cut(s)	100, 705
FatI	CATG	4 cut(s)	372, 403, 628, 842
FauI	CCCGC	1 cut(s)	705
FblI	GTMKAC	4 cut(s)	346, 519, 757, 957
Fnu4HI	GCNGC	3 cut(s)	454, 547, 1050
FokI	GGATG	5 cut(s)	236, 724, 841, 894, 994
Fsp4HI	GCNGC	3 cut(s)	454, 547, 1050
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	454, 547, 1050
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	5 cut(s)	277, 299, 546, 801, 1045
HapII	CCGG	2 cut(s)	976, 1042
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	376, 407, 632, 846
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	325, 565
HpaII	CCGG	2 cut(s)	976, 1042
Hpy166II	GTNNAC	7 cut(s)	268, 347, 501, 520, 758, 872, 958
Hpy188I	TCNGA	4 cut(s)	123, 448, 780, 910
Hpy188III	TCNNGA	3 cut(s)	85, 322, 794
Hpy8I	GTNNAC	7 cut(s)	268, 347, 501, 520, 758, 872, 958
HpyAV	CCTTC	5 cut(s)	4, 187, 212, 791, 800
HpyCH4III	ACNGT	4 cut(s)	119, 470, 658, 869
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	7 cut(s)	106, 145, 407, 456, 684, 1028, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	7 cut(s)	111, 150, 384, 603, 633, 702, 1055
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	376, 407, 632, 846
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	5 cut(s)	308, 415, 599, 715, 824
LmnI	GCTCC	2 cut(s)	745, 1092
Lsp1109I	GCAGC	2 cut(s)	440, 1036
LweI	GCATC	2 cut(s)	93, 901
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	892
MalI	GATC	5 cut(s)	310, 417, 601, 717, 826
MboI	GATC	5 cut(s)	308, 415, 599, 715, 824
MboII	GAAGA	1 cut(s)	55
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	2 cut(s)	415, 599
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	3 cut(s)	258, 751, 1034
MluI	ACGCGT	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	9 cut(s)	39, 233, 373, 406, 429, 471, 535, 628, 868
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	4 cut(s)	423, 930, 1065, 1102
MslI	CAYNNNNRTG	1 cut(s)	1012
MspI	CCGG	2 cut(s)	976, 1042
MspR9I	CCNGG	3 cut(s)	279, 622, 1042
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	279, 622
MvnI	CGCG	1 cut(s)	820
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	1042
NdeII	GATC	5 cut(s)	308, 415, 599, 715, 824
NlaIII	CATG	4 cut(s)	376, 407, 632, 846
NlaIV	GGNNCC	2 cut(s)	417, 887
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	2 cut(s)	407, 632
PaeI	GCATGC	2 cut(s)	407, 632
PceI	AGGCCT	2 cut(s)	277, 801
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	325, 565
PflFI	GACNNNGTC	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	455, 548, 1051
Psp6I	CCWGG	2 cut(s)	277, 620
PspGI	CCWGG	2 cut(s)	277, 620
PspN4I	GGNNCC	2 cut(s)	417, 887
PspPI	GGNCC	3 cut(s)	17, 211, 544
PsuI	RGATCY	2 cut(s)	415, 599
PsyI	GACNNNGTC	1 cut(s)	691
RsaI	GTAC	2 cut(s)	116, 994
RsaNI	GTAC	2 cut(s)	115, 993
RseI	CAYNNNNRTG	1 cut(s)	1012
SaqAI	TTAA	4 cut(s)	423, 930, 1065, 1102
SatI	GCNGC	3 cut(s)	454, 547, 1050
Sau3AI	GATC	5 cut(s)	308, 415, 599, 715, 824
Sau96I	GGNCC	3 cut(s)	17, 211, 544
ScrFI	CCNGG	3 cut(s)	279, 622, 1042
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	93, 901
SinI	GGWCC	2 cut(s)	17, 211
SmiMI	CAYNNNNRTG	1 cut(s)	1012
SmlI	CTYRAG	2 cut(s)	410, 792
SmoI	CTYRAG	2 cut(s)	410, 792
SphI	GCATGC	2 cut(s)	407, 632
Sse9I	AATT	3 cut(s)	258, 751, 1034
SseBI	AGGCCT	2 cut(s)	277, 801
SsiI	CCGC	4 cut(s)	7, 20, 547, 712
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	2 cut(s)	277, 801
StyD4I	CCNGG	3 cut(s)	277, 620, 1040
StyI	CCWWGG	4 cut(s)	168, 207, 741, 996
TaaI	ACNGT	4 cut(s)	119, 470, 658, 869
TaiI	ACGT	1 cut(s)	92
TasI	AATT	3 cut(s)	258, 751, 1034
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	325, 565
Tru1I	TTAA	4 cut(s)	423, 930, 1065, 1102
Tru9I	TTAA	4 cut(s)	423, 930, 1065, 1102
TscAI	CASTG	3 cut(s)	611, 834, 1083
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	2 cut(s)	453, 1049
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	4 cut(s)	17, 175, 572, 578
TspRI	CASTG	3 cut(s)	611, 834, 1083
Tth111I	GACNNNGTC	1 cut(s)	691
VpaK11BI	GGWCC	2 cut(s)	17, 211
XapI	RAATTY	1 cut(s)	1034
XceI	RCATGY	2 cut(s)	407, 632
XmiI	GTMKAC	4 cut(s)	346, 519, 757, 957
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.